Wall clock time and date at job start Tue Mar 31 2020 22:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 120.00067 * 2 1 4 4 H 1.48502 * 109.46980 * 355.31954 * 3 2 1 5 5 H 1.48501 * 109.46832 * 115.31660 * 3 2 1 6 6 H 1.48495 * 109.47214 * 235.31903 * 3 2 1 7 7 C 1.38808 * 119.99758 * 180.27956 * 2 1 3 8 8 H 1.08004 * 120.00239 * 352.36434 * 7 2 1 9 9 N 1.36944 * 119.99887 * 172.36849 * 7 2 1 10 10 C 1.47058 * 136.05788 * 6.52764 * 9 7 2 11 11 C 1.53749 * 87.89054 * 152.96179 * 10 9 7 12 12 O 1.42899 * 114.39541 * 272.67544 * 11 10 9 13 13 C 1.53007 * 114.08694 * 139.77849 * 11 10 9 14 14 N 1.46494 * 109.46928 * 86.56529 * 13 11 10 15 15 C 1.34781 * 119.99862 * 179.97438 * 14 13 11 16 16 O 1.21280 * 119.99746 * 0.02562 * 15 14 13 17 17 C 1.50700 * 120.00044 * 179.97438 * 15 14 13 18 18 C 1.50703 * 109.46962 * 180.02562 * 17 15 14 19 19 O 1.21282 * 120.00047 * 359.97438 * 18 17 15 20 20 N 1.34780 * 119.99708 * 179.97438 * 18 17 15 21 21 C 1.46498 * 119.99591 * 179.97438 * 20 18 17 22 22 C 1.53000 * 109.46784 * 180.02562 * 21 20 18 23 23 F 1.39900 * 109.47272 * 60.00415 * 22 21 20 24 24 F 1.39903 * 109.47017 * 180.02562 * 22 21 20 25 25 F 1.39893 * 109.47462 * 300.00105 * 22 21 20 26 26 C 1.47066 * 136.05683 * 186.89762 * 9 7 2 27 27 H 0.96999 * 119.99710 * 185.10483 * 1 2 3 28 28 H 1.09001 * 113.46851 * 267.69866 * 10 9 7 29 29 H 1.09001 * 113.47037 * 38.13172 * 10 9 7 30 30 H 0.96703 * 113.99848 * 273.58159 * 12 11 10 31 31 H 1.09001 * 109.46510 * 206.56068 * 13 11 10 32 32 H 1.08998 * 109.47097 * 326.55971 * 13 11 10 33 33 H 0.96997 * 120.00500 * 359.97438 * 14 13 11 34 34 H 1.09004 * 109.46965 * 299.99944 * 17 15 14 35 35 H 1.08998 * 109.47319 * 60.00120 * 17 15 14 36 36 H 0.96995 * 119.99799 * 359.97438 * 20 18 17 37 37 H 1.08992 * 109.47679 * 300.00266 * 21 20 18 38 38 H 1.09000 * 109.46843 * 60.00672 * 21 20 18 39 39 H 1.09007 * 113.46852 * 321.86298 * 26 9 7 40 40 H 1.08998 * 113.47074 * 92.24182 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2893 2.7441 -0.1142 5 1 3.0162 1.7470 1.2656 6 1 3.1876 1.6481 -1.1513 7 6 2.0102 -1.2021 -0.0059 8 1 1.4774 -2.1339 0.1139 9 7 3.3705 -1.2066 -0.1634 10 6 4.4319 -0.1910 -0.2326 11 6 5.4053 -1.2538 0.3029 12 8 5.4631 -1.3365 1.7283 13 6 6.7836 -1.2293 -0.3611 14 7 7.6440 -0.2695 0.3351 15 6 8.9127 -0.0789 -0.0777 16 8 9.3420 -0.7017 -1.0258 17 6 9.7977 0.9089 0.6380 18 6 11.1552 0.9329 -0.0159 19 8 11.3819 0.2179 -0.9690 20 7 12.1173 1.7489 0.4584 21 6 13.4371 1.7718 -0.1770 22 6 14.3355 2.7748 0.5497 23 9 14.4696 2.3954 1.8895 24 9 15.5957 2.7972 -0.0574 25 9 13.7626 4.0492 0.4809 26 6 4.4122 -2.2289 -0.3444 27 1 -0.4850 -0.8367 0.0747 28 1 4.6580 0.1320 -1.2487 29 1 4.2791 0.6438 0.4515 30 1 6.0897 -0.7211 2.1329 31 1 7.2300 -2.2223 -0.3082 32 1 6.6788 -0.9331 -1.4048 33 1 7.3006 0.2288 1.0931 34 1 9.3513 1.9019 0.5844 35 1 9.9020 0.6133 1.6819 36 1 11.9358 2.3209 1.2204 37 1 13.8837 0.7791 -0.1230 38 1 13.3326 2.0671 -1.2210 39 1 4.2426 -3.1304 0.2445 40 1 4.6324 -2.4440 -1.3900 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716944632.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:15 Heat of formation + Delta-G solvation = -231.864325 kcal Electronic energy + Delta-G solvation = -29044.637007 eV Core-core repulsion = 24059.982995 eV Total energy + Delta-G solvation = -4984.654012 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -51.19513 -48.71403 -48.67090 -41.54922 -40.91698 -39.62112 -36.75257 -36.09668 -35.17087 -34.42126 -32.47389 -30.65698 -29.61865 -27.33773 -27.14847 -24.47668 -23.37978 -22.27625 -21.49358 -21.17084 -19.74839 -19.65796 -19.48065 -19.30674 -18.60606 -17.99691 -17.47851 -17.06875 -16.85499 -16.44928 -16.29810 -16.07683 -15.71392 -15.64796 -15.49894 -15.44237 -15.12670 -15.10044 -14.83768 -14.82887 -14.74809 -14.58033 -14.39995 -14.14705 -13.99251 -13.54012 -13.28256 -12.97386 -12.86223 -12.75326 -12.35832 -11.87429 -11.74607 -11.34225 -11.24576 -11.01260 -10.60719 -10.57812 -10.39975 -10.08468 -9.20882 -8.66880 -5.47386 1.36562 1.36790 1.50456 1.56588 1.69846 1.73050 1.75762 2.28577 2.56671 2.65197 2.89859 2.96212 2.98614 3.17016 3.19538 3.31979 3.50223 3.80906 3.94712 4.12346 4.28681 4.33234 4.44946 4.48854 4.51753 4.59143 4.66841 4.78747 4.82367 5.05065 5.06006 5.16912 5.36100 5.93438 6.29468 6.52536 6.68519 6.82419 7.12846 7.31048 7.35382 8.24248 8.88884 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.024050 B = 0.001979 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.985767 B =14146.942191 C =14755.122572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.092 4.092 3 Si 1.115 2.885 4 H -0.307 1.307 5 H -0.264 1.264 6 H -0.257 1.257 7 C -0.290 4.290 8 H 0.044 0.956 9 N -0.655 5.655 10 C 0.069 3.931 11 C 0.110 3.890 12 O -0.535 6.535 13 C 0.122 3.878 14 N -0.718 5.718 15 C 0.509 3.491 16 O -0.553 6.553 17 C -0.153 4.153 18 C 0.519 3.481 19 O -0.544 6.544 20 N -0.721 5.721 21 C 0.080 3.920 22 C 0.458 3.542 23 F -0.180 7.180 24 F -0.179 7.179 25 F -0.180 7.180 26 C 0.125 3.875 27 H 0.244 0.756 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.388 0.612 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.414 0.586 34 H 0.169 0.831 35 H 0.172 0.828 36 H 0.423 0.577 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.047 0.953 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.815 9.206 5.919 35.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.283 4.283 3 Si 0.940 3.060 4 H -0.236 1.236 5 H -0.191 1.191 6 H -0.182 1.182 7 C -0.417 4.417 8 H 0.062 0.938 9 N -0.383 5.383 10 C -0.055 4.055 11 C 0.066 3.934 12 O -0.342 6.342 13 C -0.004 4.004 14 N -0.374 5.374 15 C 0.295 3.705 16 O -0.429 6.429 17 C -0.195 4.195 18 C 0.305 3.695 19 O -0.418 6.418 20 N -0.379 5.379 21 C -0.046 4.046 22 C 0.404 3.596 23 F -0.161 7.161 24 F -0.161 7.161 25 F -0.162 7.162 26 C -0.001 4.001 27 H 0.053 0.947 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.239 0.761 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.252 0.748 34 H 0.186 0.814 35 H 0.189 0.811 36 H 0.261 0.739 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.066 0.934 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 33.420 9.383 4.429 34.994 hybrid contribution -0.360 -1.173 0.750 1.438 sum 33.060 8.210 5.179 34.456 Atomic orbital electron populations 1.71036 1.06717 1.28495 1.55374 1.27299 0.96525 1.05032 0.99426 0.83216 0.73347 0.71103 0.78320 1.23556 1.19073 1.18150 1.19949 0.81009 0.94367 1.46398 0.93791 1.45784 1.01470 1.05165 1.85880 1.23765 0.87667 0.94437 0.99675 1.22654 0.91560 0.97142 0.82001 1.86655 1.66583 1.63891 1.17104 1.21565 0.87771 0.94214 0.96815 1.45741 1.12055 1.43853 1.35754 1.20644 0.82109 0.83581 0.84125 1.90878 1.73876 1.48992 1.29181 1.21663 0.90798 1.03445 1.03573 1.20532 0.86555 0.78924 0.83500 1.90914 1.81445 1.41259 1.28210 1.45525 1.10725 1.45209 1.36406 1.22416 0.83659 0.99681 0.98826 1.20442 0.80071 0.81417 0.77697 1.93234 1.96007 1.90991 1.35898 1.93228 1.43157 1.96560 1.83137 1.93233 1.84253 1.42566 1.96126 1.22647 0.85428 0.93452 0.98534 0.94720 0.91545 0.92393 0.76146 0.90397 0.90347 0.74764 0.81390 0.81096 0.73892 0.86562 0.86651 0.93424 0.90560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.52 13.70 21.65 0.30 -63.22 16 2 C -0.09 -5.56 5.50 84.86 0.47 -5.09 16 3 Si 1.12 51.88 25.13 68.60 1.72 53.60 16 4 H -0.31 -14.81 7.11 99.48 0.71 -14.10 16 5 H -0.26 -10.88 6.64 99.48 0.66 -10.22 16 6 H -0.26 -10.49 6.13 99.48 0.61 -9.89 16 7 C -0.29 -17.20 11.08 84.03 0.93 -16.27 16 8 H 0.04 2.86 8.05 -2.91 -0.02 2.83 16 9 N -0.65 -31.45 3.69 -738.49 -2.73 -34.18 16 10 C 0.07 2.54 5.13 83.26 0.43 2.97 16 11 C 0.11 3.19 1.74 -10.37 -0.02 3.17 16 12 O -0.54 -14.95 13.56 -148.98 -2.02 -16.97 16 13 C 0.12 2.76 5.43 86.38 0.47 3.22 16 14 N -0.72 -10.96 5.34 -463.06 -2.47 -13.44 16 15 C 0.51 9.24 7.82 87.66 0.69 9.92 16 16 O -0.55 -17.02 14.18 20.41 0.29 -16.73 16 17 C -0.15 -0.98 6.19 29.10 0.18 -0.80 16 18 C 0.52 7.14 7.82 87.66 0.69 7.82 16 19 O -0.54 -14.42 14.18 20.41 0.29 -14.14 16 20 N -0.72 -4.85 5.42 -463.07 -2.51 -7.36 16 21 C 0.08 0.61 5.64 86.38 0.49 1.10 16 22 C 0.46 3.50 3.11 71.98 0.22 3.73 16 23 F -0.18 -1.54 17.18 44.97 0.77 -0.77 16 24 F -0.18 -1.86 17.32 44.97 0.78 -1.08 16 25 F -0.18 -1.60 17.18 44.97 0.77 -0.82 16 26 C 0.13 4.70 8.10 83.17 0.67 5.37 16 27 H 0.24 16.12 8.73 -92.71 -0.81 15.31 16 28 H 0.07 2.31 7.50 -2.39 -0.02 2.29 16 29 H 0.06 2.11 4.67 -2.39 -0.01 2.10 16 30 H 0.39 6.07 7.21 -74.06 -0.53 5.54 16 31 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.08 1.92 7.89 -2.39 -0.02 1.90 16 33 H 0.41 3.30 6.95 -92.71 -0.64 2.65 16 34 H 0.17 -0.20 8.14 -2.39 -0.02 -0.22 16 35 H 0.17 -0.36 8.14 -2.39 -0.02 -0.38 16 36 H 0.42 0.20 8.36 -92.71 -0.78 -0.57 16 37 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 40 H 0.08 2.56 8.10 -2.39 -0.02 2.54 16 Total: -1.00 -94.13 350.62 -0.59 -94.72 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -0.99 Total: 5.25 kcal Atomic # 6 Polarization: 9.94 SS G_CDS: 5.21 Total: 15.15 kcal Atomic # 7 Polarization: -110.79 SS G_CDS: -7.41 Total: -118.20 kcal Atomic # 8 Polarization: -46.40 SS G_CDS: -1.44 Total: -47.84 kcal Atomic # 9 Polarization: -5.00 SS G_CDS: 2.32 Total: -2.68 kcal Atomic # 14 Polarization: 51.88 SS G_CDS: 1.72 Total: 53.60 kcal Total: -94.13 -0.59 -94.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716944632.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.146 kcal (2) G-P(sol) polarization free energy of solvation -94.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -231.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -231.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds