Wall clock time and date at job start Tue Mar 31 2020 22:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86800 * 119.99641 * 2 1 4 4 H 1.48501 * 109.47288 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47469 * 299.99963 * 3 2 1 6 6 H 1.48497 * 109.47162 * 60.00129 * 3 2 1 7 7 C 1.38950 * 120.00166 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99729 * 180.02562 * 7 2 1 9 9 N 1.37091 * 120.00047 * 359.97438 * 7 2 1 10 10 C 1.34782 * 120.00067 * 180.02562 * 9 7 2 11 11 O 1.21299 * 119.99684 * 0.02562 * 10 9 7 12 12 C 1.50698 * 120.00154 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.46973 * 179.97438 * 12 10 9 14 14 C 1.46898 * 111.00189 * 174.43919 * 13 12 10 15 15 C 1.53002 * 112.85047 * 291.35856 * 14 13 12 16 16 N 1.46498 * 109.47105 * 312.16690 * 15 14 13 17 17 C 1.34772 * 120.00008 * 174.76288 * 16 15 14 18 18 O 1.21627 * 120.00135 * 0.02562 * 17 16 15 19 19 C 1.47172 * 119.99885 * 179.97438 * 17 16 15 20 20 C 1.38245 * 128.47310 * 179.70213 * 19 17 16 21 21 N 1.31240 * 111.88789 * 179.85068 * 20 19 17 22 22 N 1.27337 * 120.03730 * 0.49423 * 21 20 19 23 23 S 1.56641 * 109.74079 * 359.71600 * 22 21 20 24 24 C 1.53780 * 113.62038 * 160.04834 * 14 13 12 25 25 C 1.53781 * 87.08270 * 220.02373 * 24 14 13 26 26 C 1.53777 * 87.08158 * 25.42922 * 25 24 14 27 27 H 0.96998 * 120.00562 * 0.02562 * 1 2 3 28 28 H 0.97000 * 120.00577 * 0.02562 * 9 7 2 29 29 H 1.08997 * 109.47347 * 59.99861 * 12 10 9 30 30 H 1.09000 * 109.47062 * 299.99898 * 12 10 9 31 31 H 1.00900 * 111.00449 * 298.39272 * 13 12 10 32 32 H 1.09006 * 109.47267 * 72.16962 * 15 14 13 33 33 H 1.09001 * 109.47380 * 192.16122 * 15 14 13 34 34 H 0.96997 * 119.99783 * 354.76515 * 16 15 14 35 35 H 1.07997 * 124.05817 * 0.02562 * 20 19 17 36 36 H 1.09002 * 113.60646 * 334.57334 * 24 14 13 37 37 H 1.08997 * 113.61061 * 105.47063 * 24 14 13 38 38 H 1.09004 * 113.61369 * 270.88114 * 25 24 14 39 39 H 1.09000 * 113.61141 * 139.98287 * 25 24 14 40 40 H 1.08997 * 113.61546 * 220.01775 * 26 25 24 41 41 H 1.09007 * 113.61068 * 89.12038 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3466 0.0006 5 1 1.8892 2.3965 -1.2125 6 1 1.8892 2.3964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0001 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5577 -0.0001 12 6 1.2440 -4.8629 -0.0011 13 7 2.1986 -5.9794 -0.0016 14 6 1.5034 -7.2667 0.1307 15 6 0.8681 -7.4599 1.5091 16 7 1.8438 -7.1214 2.5482 17 6 1.4734 -7.1153 3.8440 18 8 0.3292 -7.3912 4.1508 19 6 2.4536 -6.7757 4.8879 20 6 2.2654 -6.7103 6.2560 21 7 3.3674 -6.3772 6.8861 22 7 4.4339 -6.1499 6.2284 23 16 4.1628 -6.3428 4.6977 24 6 2.3390 -8.4693 -0.3386 25 6 1.0452 -9.0278 -0.9544 26 6 0.5496 -7.5744 -1.0357 27 1 -0.4851 0.8400 -0.0004 28 1 0.3534 -2.3907 -0.0005 29 1 0.6176 -4.9205 -0.8913 30 1 0.6170 -4.9209 0.8886 31 1 2.7741 -5.9628 -0.8303 32 1 -0.0022 -6.8103 1.6024 33 1 0.5599 -8.4990 1.6247 34 1 2.7563 -6.9016 2.3036 35 1 1.3252 -6.9121 6.7475 36 1 3.0983 -8.2118 -1.0770 37 1 2.7302 -9.0748 0.4790 38 1 0.4679 -9.6484 -0.2691 39 1 1.1914 -9.4945 -1.9286 40 1 -0.5037 -7.4574 -0.7809 41 1 0.8197 -7.0723 -1.9648 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717147795.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:52 Heat of formation + Delta-G solvation = 28.441074 kcal Electronic energy + Delta-G solvation = -26872.893289 eV Core-core repulsion = 22916.429329 eV Total energy + Delta-G solvation = -3956.463961 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.99482 -40.44138 -39.14302 -38.04148 -34.60757 -34.15296 -33.25351 -32.28825 -31.24238 -28.73117 -27.29032 -26.61082 -25.86097 -24.33404 -23.10767 -22.22696 -20.76102 -19.49012 -19.28634 -19.03563 -17.92809 -17.44318 -16.80705 -16.20988 -16.04500 -15.63197 -15.47361 -14.95871 -14.76967 -14.60838 -14.54468 -14.13077 -14.04152 -13.50984 -13.25640 -12.88651 -12.84372 -12.52855 -12.36857 -12.13091 -12.02934 -11.60007 -11.44065 -11.19215 -11.03694 -10.87368 -10.51152 -10.48500 -10.37590 -10.28786 -10.25876 -10.25772 -10.00457 -9.55806 -9.24570 -8.57756 -8.14804 -8.00557 -6.45648 -3.86718 -0.42944 0.65664 1.32763 1.80341 2.74442 2.85764 3.13414 3.24587 3.31080 3.83916 3.85482 3.96219 4.20324 4.27997 4.37153 4.41730 4.51042 4.58154 4.65927 5.02751 5.19576 5.23275 5.35800 5.38100 5.45822 5.50818 5.55738 5.67842 5.70960 5.79585 5.83322 5.91671 6.06272 6.17657 6.21268 7.04414 7.22985 7.46810 7.48468 7.51429 7.88140 8.01779 8.56277 9.13771 9.49810 10.00486 10.71978 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.007983 B = 0.003827 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3506.438946 B = 7314.428414 C = 9735.242291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.023 3.977 3 Si 0.928 3.072 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.300 4.300 8 H 0.104 0.896 9 N -0.563 5.563 10 C 0.440 3.560 11 O -0.583 6.583 12 C 0.051 3.949 13 N -0.654 5.654 14 C 0.077 3.923 15 C 0.153 3.847 16 N -0.701 5.701 17 C 0.601 3.399 18 O -0.525 6.525 19 C -0.289 4.289 20 C 0.072 3.928 21 N -0.256 5.256 22 N -0.262 5.262 23 S 0.446 5.554 24 C -0.129 4.129 25 C -0.140 4.140 26 C -0.165 4.165 27 H 0.271 0.729 28 H 0.392 0.608 29 H 0.047 0.953 30 H 0.083 0.917 31 H 0.355 0.645 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.412 0.588 35 H 0.215 0.785 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.418 -18.866 2.040 19.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.179 4.179 3 Si 0.755 3.245 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.199 5.199 10 C 0.225 3.775 11 O -0.467 6.467 12 C -0.081 4.081 13 N -0.286 5.286 14 C -0.015 4.015 15 C 0.029 3.971 16 N -0.352 5.352 17 C 0.384 3.616 18 O -0.402 6.402 19 C -0.430 4.430 20 C -0.096 4.096 21 N -0.120 5.120 22 N -0.243 5.243 23 S 0.581 5.419 24 C -0.167 4.167 25 C -0.178 4.178 26 C -0.205 4.205 27 H 0.081 0.919 28 H 0.225 0.775 29 H 0.065 0.935 30 H 0.102 0.898 31 H 0.176 0.824 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.249 0.751 35 H 0.231 0.769 36 H 0.107 0.893 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.325 -18.305 3.201 18.878 hybrid contribution -1.791 0.719 -0.945 2.149 sum 1.534 -17.586 2.256 17.796 Atomic orbital electron populations 1.69613 1.05954 1.28119 1.50462 1.25261 0.95615 0.99739 0.97256 0.85820 0.79720 0.81184 0.77753 1.19202 1.20731 1.20730 1.19735 0.93362 0.82190 1.47637 0.87860 1.41877 1.09203 1.04657 1.64197 1.19785 0.88399 0.84632 0.84666 1.90521 1.13617 1.87076 1.55497 1.21636 0.94332 0.90817 1.01345 1.59828 1.22129 0.99450 1.47150 1.22567 0.94954 0.90601 0.93396 1.21125 0.91242 1.00986 0.83792 1.45623 1.15670 1.69325 1.04623 1.16448 0.85925 0.77779 0.81452 1.90844 1.18489 1.48973 1.81941 1.28048 1.01133 1.14793 0.99026 1.24447 0.98841 0.97022 0.89241 1.70708 0.95256 1.14696 1.31292 1.78819 1.21691 1.20047 1.03750 1.82884 1.00759 1.44831 1.13449 1.23119 0.96943 0.95847 1.00799 1.22778 0.97318 0.96308 1.01397 1.23613 1.00462 0.97166 0.99247 0.91878 0.77525 0.93508 0.89842 0.82434 0.90492 0.90461 0.75135 0.76892 0.89289 0.90864 0.89940 0.91142 0.90915 0.89441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.22 13.05 55.50 0.72 -23.49 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 20.80 29.55 -169.99 -5.02 15.78 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.30 -8.16 9.68 -14.94 -0.14 -8.30 16 8 H 0.10 2.95 7.16 -52.48 -0.38 2.58 16 9 N -0.56 -13.78 5.29 -10.96 -0.06 -13.83 16 10 C 0.44 9.71 7.83 -10.98 -0.09 9.62 16 11 O -0.58 -14.69 15.90 5.54 0.09 -14.60 16 12 C 0.05 0.81 5.78 -4.98 -0.03 0.78 16 13 N -0.65 -8.50 5.32 -100.40 -0.53 -9.04 16 14 C 0.08 0.75 0.79 -130.79 -0.10 0.65 16 15 C 0.15 1.59 4.60 -4.04 -0.02 1.57 16 16 N -0.70 -7.88 5.37 -61.46 -0.33 -8.21 16 17 C 0.60 7.65 7.80 -12.64 -0.10 7.55 16 18 O -0.53 -8.02 16.97 5.25 0.09 -7.93 16 19 C -0.29 -3.37 6.81 -35.95 -0.24 -3.61 16 20 C 0.07 0.82 11.55 -17.80 -0.21 0.61 16 21 N -0.26 -3.33 11.54 30.36 0.35 -2.98 16 22 N -0.26 -3.41 12.51 60.35 0.75 -2.66 16 23 S 0.45 4.80 23.05 -107.50 -2.48 2.32 16 24 C -0.13 -1.01 7.34 -25.92 -0.19 -1.20 16 25 C -0.14 -0.99 7.73 -25.92 -0.20 -1.19 16 26 C -0.16 -1.42 6.49 -25.92 -0.17 -1.59 16 27 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 28 H 0.39 9.28 7.90 -40.82 -0.32 8.96 16 29 H 0.05 0.68 7.59 -51.93 -0.39 0.28 16 30 H 0.08 1.30 6.91 -51.93 -0.36 0.94 16 31 H 0.35 4.74 8.38 -39.29 -0.33 4.41 16 32 H 0.08 0.90 7.36 -51.93 -0.38 0.52 16 33 H 0.08 0.71 7.36 -51.93 -0.38 0.33 16 34 H 0.41 4.45 7.52 -40.82 -0.31 4.14 16 35 H 0.21 1.90 8.06 -52.49 -0.42 1.48 16 36 H 0.09 0.69 7.96 -51.93 -0.41 0.28 16 37 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 38 H 0.08 0.54 7.67 -51.93 -0.40 0.14 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 41 H 0.09 0.79 8.14 -51.92 -0.42 0.37 16 LS Contribution 366.45 15.07 5.52 5.52 Total: -1.00 -32.23 366.45 -7.39 -39.62 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: -4.91 Total: 14.10 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: -1.59 Total: 5.40 kcal Atomic # 7 Polarization: -61.12 SS G_CDS: 0.91 Total: -60.22 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: 0.18 Total: -22.53 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: 4.80 SS G_CDS: -2.48 Total: 2.32 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.23 -7.39 -39.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717147795.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.060 kcal (2) G-P(sol) polarization free energy of solvation -32.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds