Wall clock time and date at job start Tue Mar 31 2020 22:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31403 * 1 3 3 Si 1.86797 * 120.00293 * 2 1 4 4 H 1.48495 * 109.47381 * 270.00706 * 3 2 1 5 5 H 1.48506 * 109.46767 * 30.00298 * 3 2 1 6 6 H 1.48498 * 109.47076 * 149.99871 * 3 2 1 7 7 C 1.38954 * 120.00067 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00050 * 179.97438 * 7 2 1 9 9 N 1.37098 * 119.99835 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99984 * 179.97438 * 9 7 2 11 11 O 1.21298 * 119.99849 * 0.02562 * 10 9 7 12 12 C 1.50704 * 120.00175 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.47106 * 180.02562 * 12 10 9 14 14 C 1.46899 * 110.99849 * 176.45728 * 13 12 10 15 15 C 1.52997 * 112.85030 * 294.64619 * 14 13 12 16 16 N 1.46505 * 109.47203 * 311.61518 * 15 14 13 17 17 C 1.34775 * 120.00012 * 174.98372 * 16 15 14 18 18 O 1.21600 * 119.99884 * 359.97438 * 17 16 15 19 19 C 1.47452 * 119.99798 * 179.97438 * 17 16 15 20 20 C 1.37979 * 124.15502 * 179.72768 * 19 17 16 21 21 S 1.72102 * 104.03549 * 179.90468 * 20 19 17 22 22 N 1.56408 * 96.15089 * 0.32158 * 21 20 19 23 23 N 1.27419 * 109.87707 * 359.80537 * 22 21 20 24 24 C 1.53775 * 113.61372 * 163.45164 * 14 13 12 25 25 C 1.53961 * 87.01771 * 220.04724 * 24 14 13 26 26 C 1.53778 * 87.11234 * 25.36446 * 25 24 14 27 27 H 0.97003 * 120.00314 * 359.97438 * 1 2 3 28 28 H 0.96999 * 120.00548 * 0.02562 * 9 7 2 29 29 H 1.08994 * 109.47083 * 59.99839 * 12 10 9 30 30 H 1.08997 * 109.46635 * 299.99854 * 12 10 9 31 31 H 1.00896 * 110.99917 * 300.41246 * 13 12 10 32 32 H 1.09003 * 109.47189 * 71.60939 * 15 14 13 33 33 H 1.08996 * 109.47109 * 191.61110 * 15 14 13 34 34 H 0.97000 * 119.99412 * 354.97871 * 16 15 14 35 35 H 1.08000 * 127.98135 * 0.02562 * 20 19 17 36 36 H 1.09005 * 113.61386 * 334.56205 * 24 14 13 37 37 H 1.08995 * 113.62048 * 105.47007 * 24 14 13 38 38 H 1.08994 * 113.53660 * 270.80993 * 25 24 14 39 39 H 1.09002 * 113.66453 * 139.93276 * 25 24 14 40 40 H 1.08996 * 113.61217 * 220.09371 * 26 25 24 41 41 H 1.09002 * 113.61512 * 89.18548 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4455 2.6526 0.7001 6 1 3.5456 1.4400 0.7001 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0016 11 8 3.2102 -3.5579 -0.0021 12 6 1.2437 -4.8630 -0.0022 13 7 2.1983 -5.9796 -0.0027 14 6 1.5000 -7.2692 0.0815 15 6 0.7612 -7.4594 1.4077 16 7 1.6567 -7.1250 2.5179 17 6 1.1903 -7.1213 3.7824 18 8 0.0260 -7.3951 4.0017 19 6 2.0918 -6.7853 4.8998 20 6 1.7047 -6.7501 6.2237 21 16 3.1396 -6.3112 7.0665 22 7 4.0510 -6.2017 5.8001 23 7 3.3748 -6.4737 4.7549 24 6 2.3749 -8.4704 -0.3140 25 6 1.1338 -9.0369 -1.0276 26 6 0.6401 -7.5859 -1.1536 27 1 -0.4851 0.8400 0.0004 28 1 0.3533 -2.3907 -0.0005 29 1 0.6167 -4.9202 -0.8919 30 1 0.6174 -4.9213 0.8880 31 1 2.7957 -5.9442 -0.8150 32 1 -0.1108 -6.8059 1.4349 33 1 0.4405 -8.4971 1.4994 34 1 2.5854 -6.9063 2.3429 35 1 0.7274 -6.9533 6.6361 36 1 3.1889 -8.2133 -0.9918 37 1 2.7031 -9.0700 0.5351 38 1 0.5079 -9.6569 -0.3860 39 1 1.3565 -9.5070 -1.9855 40 1 -0.4301 -7.4724 -0.9812 41 1 0.9791 -7.0866 -2.0612 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717154649.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:04 Heat of formation + Delta-G solvation = 27.046353 kcal Electronic energy + Delta-G solvation = -26945.171575 eV Core-core repulsion = 22988.647135 eV Total energy + Delta-G solvation = -3956.524440 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.21990 -40.23351 -38.88360 -37.96237 -34.48054 -34.07307 -33.14859 -32.30802 -31.17601 -28.34389 -27.11872 -26.60863 -25.79149 -24.33139 -23.48007 -22.19326 -20.91657 -19.60047 -19.20763 -18.63166 -17.86081 -17.01502 -16.60162 -16.16558 -16.04877 -15.71400 -15.34976 -15.12993 -14.68820 -14.50363 -14.47091 -14.03017 -13.83331 -13.41992 -13.15524 -12.76831 -12.74357 -12.43501 -12.29414 -12.24568 -11.96595 -11.54038 -11.33860 -11.10940 -10.96331 -10.78708 -10.52611 -10.39774 -10.37108 -10.28456 -10.26135 -10.19206 -10.09747 -9.48676 -9.08562 -8.46744 -8.04030 -7.93734 -6.39744 -3.80393 -0.12109 0.72789 1.32699 1.36160 2.97659 3.09578 3.18858 3.27314 3.33660 3.69306 3.93261 4.06773 4.28073 4.39739 4.48460 4.50243 4.54760 4.68739 4.79065 5.10011 5.15529 5.26181 5.32174 5.44932 5.54984 5.60604 5.64594 5.77200 5.79790 5.89129 5.93862 6.02729 6.16440 6.28918 6.34123 7.17014 7.24005 7.56607 7.56994 7.60987 8.05706 8.08325 8.63462 9.20080 9.56625 10.08261 10.78053 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.007596 B = 0.003759 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3685.371367 B = 7446.549183 C =10139.443855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.298 4.298 8 H 0.103 0.897 9 N -0.565 5.565 10 C 0.441 3.559 11 O -0.581 6.581 12 C 0.052 3.948 13 N -0.651 5.651 14 C 0.079 3.921 15 C 0.150 3.850 16 N -0.689 5.689 17 C 0.603 3.397 18 O -0.535 6.535 19 C -0.019 4.019 20 C -0.238 4.238 21 S 0.451 5.549 22 N -0.284 5.284 23 N -0.201 5.201 24 C -0.128 4.128 25 C -0.140 4.140 26 C -0.166 4.166 27 H 0.271 0.729 28 H 0.391 0.609 29 H 0.046 0.954 30 H 0.083 0.917 31 H 0.355 0.645 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.423 0.577 35 H 0.208 0.792 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.327 -18.727 8.572 20.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.756 3.244 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.428 4.428 8 H 0.120 0.880 9 N -0.201 5.201 10 C 0.227 3.773 11 O -0.464 6.464 12 C -0.081 4.081 13 N -0.283 5.283 14 C -0.013 4.013 15 C 0.026 3.974 16 N -0.340 5.340 17 C 0.383 3.617 18 O -0.412 6.412 19 C -0.167 4.167 20 C -0.395 4.395 21 S 0.587 5.413 22 N -0.265 5.265 23 N -0.071 5.071 24 C -0.166 4.166 25 C -0.178 4.178 26 C -0.206 4.206 27 H 0.081 0.919 28 H 0.224 0.776 29 H 0.064 0.936 30 H 0.101 0.899 31 H 0.176 0.824 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.261 0.739 35 H 0.225 0.775 36 H 0.107 0.893 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.463 -18.193 9.867 20.748 hybrid contribution -1.651 0.682 -1.690 2.459 sum -0.188 -17.511 8.177 19.327 Atomic orbital electron populations 1.69611 1.05929 1.28101 1.50721 1.25248 0.95613 0.99676 0.97390 0.85874 0.79276 0.80883 0.78364 1.20421 1.20943 1.19413 1.19696 0.93341 0.82246 1.47498 0.87960 1.41858 1.09151 1.04616 1.64501 1.19807 0.88404 0.84671 0.84442 1.90532 1.13655 1.87060 1.55202 1.21629 0.94386 0.90851 1.01204 1.59837 1.20574 0.99184 1.48727 1.22547 0.94791 0.90671 0.93320 1.21134 0.92344 1.00895 0.83015 1.45623 1.16012 1.67888 1.04492 1.16622 0.85590 0.77815 0.81629 1.90823 1.16196 1.49866 1.84310 1.22673 0.91754 1.07107 0.95128 1.28855 1.08648 1.05377 0.96629 1.81507 0.93399 1.46516 1.19841 1.78728 1.26563 1.22277 0.98915 1.71572 1.04349 1.10812 1.20399 1.23129 0.97022 0.95811 1.00629 1.22805 0.97762 0.96263 1.00951 1.23631 1.00826 0.97202 0.98917 0.91914 0.77551 0.93625 0.89882 0.82450 0.90638 0.90594 0.73873 0.77515 0.89334 0.90863 0.90017 0.91192 0.90994 0.89486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.88 13.05 55.50 0.72 -24.15 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 21.37 29.55 -169.99 -5.02 16.35 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.30 -8.43 9.68 -14.93 -0.14 -8.58 16 8 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 9 N -0.56 -14.50 5.29 -10.96 -0.06 -14.55 16 10 C 0.44 10.45 7.83 -10.98 -0.09 10.36 16 11 O -0.58 -15.74 15.86 5.54 0.09 -15.65 16 12 C 0.05 0.90 5.80 -4.97 -0.03 0.87 16 13 N -0.65 -9.78 5.36 -100.40 -0.54 -10.32 16 14 C 0.08 0.90 0.77 -130.79 -0.10 0.80 16 15 C 0.15 1.81 4.49 -4.04 -0.02 1.79 16 16 N -0.69 -9.36 5.38 -61.37 -0.33 -9.69 16 17 C 0.60 8.74 7.81 -12.51 -0.10 8.64 16 18 O -0.54 -8.65 16.79 5.28 0.09 -8.56 16 19 C -0.02 -0.26 6.87 -83.78 -0.58 -0.83 16 20 C -0.24 -2.34 11.21 30.64 0.34 -2.00 16 21 S 0.45 3.82 23.38 -107.50 -2.51 1.30 16 22 N -0.28 -3.73 12.49 60.35 0.75 -2.98 16 23 N -0.20 -2.93 11.24 32.74 0.37 -2.56 16 24 C -0.13 -1.22 7.36 -25.83 -0.19 -1.41 16 25 C -0.14 -1.16 7.74 -25.83 -0.20 -1.36 16 26 C -0.17 -1.64 6.61 -25.92 -0.17 -1.81 16 27 H 0.27 7.07 8.31 -40.82 -0.34 6.74 16 28 H 0.39 9.69 7.90 -40.82 -0.32 9.36 16 29 H 0.05 0.72 7.62 -51.93 -0.40 0.33 16 30 H 0.08 1.43 6.85 -51.93 -0.36 1.07 16 31 H 0.35 5.46 8.38 -39.29 -0.33 5.13 16 32 H 0.08 0.99 7.33 -51.93 -0.38 0.61 16 33 H 0.08 0.81 7.35 -51.93 -0.38 0.43 16 34 H 0.42 6.08 7.69 -40.82 -0.31 5.76 16 35 H 0.21 1.52 8.06 -52.49 -0.42 1.09 16 36 H 0.09 0.85 8.01 -51.93 -0.42 0.43 16 37 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 38 H 0.08 0.62 7.66 -51.93 -0.40 0.22 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 41 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 366.16 15.07 5.52 5.52 Total: -1.00 -33.86 366.16 -7.20 -41.06 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: -4.91 Total: 17.26 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: -1.37 Total: 6.99 kcal Atomic # 7 Polarization: -65.18 SS G_CDS: 0.92 Total: -64.26 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: 0.18 Total: -24.21 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: 3.82 SS G_CDS: -2.51 Total: 1.30 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.86 -7.20 -41.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717154649.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.107 kcal (2) G-P(sol) polarization free energy of solvation -33.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds