Wall clock time and date at job start Tue Mar 31 2020 22:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31403 * 1 3 3 Si 1.86797 * 120.00293 * 2 1 4 4 H 1.48495 * 109.47381 * 270.00706 * 3 2 1 5 5 H 1.48506 * 109.46767 * 30.00298 * 3 2 1 6 6 H 1.48498 * 109.47076 * 149.99871 * 3 2 1 7 7 C 1.38954 * 120.00067 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00050 * 179.97438 * 7 2 1 9 9 N 1.37098 * 119.99835 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99984 * 179.97438 * 9 7 2 11 11 O 1.21298 * 119.99849 * 0.02562 * 10 9 7 12 12 C 1.50704 * 120.00175 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.47106 * 180.02562 * 12 10 9 14 14 C 1.46899 * 110.99849 * 176.45728 * 13 12 10 15 15 C 1.52997 * 112.85030 * 294.64619 * 14 13 12 16 16 N 1.46505 * 109.47203 * 311.61518 * 15 14 13 17 17 C 1.34775 * 120.00012 * 174.98372 * 16 15 14 18 18 O 1.21600 * 119.99884 * 359.97438 * 17 16 15 19 19 C 1.47452 * 119.99798 * 179.97438 * 17 16 15 20 20 C 1.37979 * 124.15502 * 179.72768 * 19 17 16 21 21 S 1.72102 * 104.03549 * 179.90468 * 20 19 17 22 22 N 1.56408 * 96.15089 * 0.32158 * 21 20 19 23 23 N 1.27419 * 109.87707 * 359.80537 * 22 21 20 24 24 C 1.53775 * 113.61372 * 163.45164 * 14 13 12 25 25 C 1.53961 * 87.01771 * 220.04724 * 24 14 13 26 26 C 1.53778 * 87.11234 * 25.36446 * 25 24 14 27 27 H 0.97003 * 120.00314 * 359.97438 * 1 2 3 28 28 H 0.96999 * 120.00548 * 0.02562 * 9 7 2 29 29 H 1.08994 * 109.47083 * 59.99839 * 12 10 9 30 30 H 1.08997 * 109.46635 * 299.99854 * 12 10 9 31 31 H 1.00896 * 110.99917 * 300.41246 * 13 12 10 32 32 H 1.09003 * 109.47189 * 71.60939 * 15 14 13 33 33 H 1.08996 * 109.47109 * 191.61110 * 15 14 13 34 34 H 0.97000 * 119.99412 * 354.97871 * 16 15 14 35 35 H 1.08000 * 127.98135 * 0.02562 * 20 19 17 36 36 H 1.09005 * 113.61386 * 334.56205 * 24 14 13 37 37 H 1.08995 * 113.62048 * 105.47007 * 24 14 13 38 38 H 1.08994 * 113.53660 * 270.80993 * 25 24 14 39 39 H 1.09002 * 113.66453 * 139.93276 * 25 24 14 40 40 H 1.08996 * 113.61217 * 220.09371 * 26 25 24 41 41 H 1.09002 * 113.61512 * 89.18548 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4455 2.6526 0.7001 6 1 3.5456 1.4400 0.7001 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0016 11 8 3.2102 -3.5579 -0.0021 12 6 1.2437 -4.8630 -0.0022 13 7 2.1983 -5.9796 -0.0027 14 6 1.5000 -7.2692 0.0815 15 6 0.7612 -7.4594 1.4077 16 7 1.6567 -7.1250 2.5179 17 6 1.1903 -7.1213 3.7824 18 8 0.0260 -7.3951 4.0017 19 6 2.0918 -6.7853 4.8998 20 6 1.7047 -6.7501 6.2237 21 16 3.1396 -6.3112 7.0665 22 7 4.0510 -6.2017 5.8001 23 7 3.3748 -6.4737 4.7549 24 6 2.3749 -8.4704 -0.3140 25 6 1.1338 -9.0369 -1.0276 26 6 0.6401 -7.5859 -1.1536 27 1 -0.4851 0.8400 0.0004 28 1 0.3533 -2.3907 -0.0005 29 1 0.6167 -4.9202 -0.8919 30 1 0.6174 -4.9213 0.8880 31 1 2.7957 -5.9442 -0.8150 32 1 -0.1108 -6.8059 1.4349 33 1 0.4405 -8.4971 1.4994 34 1 2.5854 -6.9063 2.3429 35 1 0.7274 -6.9533 6.6361 36 1 3.1889 -8.2133 -0.9918 37 1 2.7031 -9.0700 0.5351 38 1 0.5079 -9.6569 -0.3860 39 1 1.3565 -9.5070 -1.9855 40 1 -0.4301 -7.4724 -0.9812 41 1 0.9791 -7.0866 -2.0612 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717154649.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:03 Heat of formation + Delta-G solvation = -0.796214 kcal Electronic energy + Delta-G solvation = -26946.378920 eV Core-core repulsion = 22988.647135 eV Total energy + Delta-G solvation = -3957.731784 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.16321 -41.21840 -40.09068 -39.67603 -36.04962 -35.49879 -34.53301 -33.24619 -33.21115 -29.34708 -28.45015 -27.71185 -26.73564 -25.98793 -24.52716 -23.13322 -21.85419 -21.06052 -20.56766 -19.91277 -19.54875 -18.18871 -17.67069 -17.23185 -17.14554 -16.89059 -16.65534 -16.37939 -16.07957 -15.87922 -15.72113 -15.62743 -15.01463 -14.82198 -14.31903 -14.07483 -13.72824 -13.65839 -13.54792 -13.21588 -13.19677 -13.03102 -12.93965 -12.43982 -12.41850 -12.15681 -11.94369 -11.63946 -11.51572 -11.42384 -11.25606 -11.21157 -11.17231 -10.90760 -10.35171 -10.13975 -10.02473 -9.27737 -8.47907 -5.96686 -0.94018 -0.03938 0.32474 0.54047 1.36061 1.39456 1.52464 1.96160 2.04316 2.07746 2.27655 2.74089 2.91420 3.19023 3.43654 3.53278 3.61749 3.65666 3.76004 3.89956 3.93990 4.26705 4.34278 4.42796 4.48798 4.50057 4.59383 4.65350 4.83331 4.87834 5.08980 5.11811 5.15499 5.28617 5.39143 5.45461 5.88389 6.08867 6.24496 6.40828 6.56341 6.58606 6.97498 7.11431 7.54819 8.10362 8.69619 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.007596 B = 0.003759 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3685.371367 B = 7446.549183 C =10139.443855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.013 4.013 3 Si 0.992 3.008 4 H -0.269 1.269 5 H -0.270 1.270 6 H -0.274 1.274 7 C -0.333 4.333 8 H 0.078 0.922 9 N -0.575 5.575 10 C 0.439 3.561 11 O -0.618 6.618 12 C 0.072 3.928 13 N -0.661 5.661 14 C 0.075 3.925 15 C 0.149 3.851 16 N -0.689 5.689 17 C 0.599 3.401 18 O -0.559 6.559 19 C -0.048 4.048 20 C -0.236 4.236 21 S 0.559 5.441 22 N -0.336 5.336 23 N -0.236 5.236 24 C -0.124 4.124 25 C -0.126 4.126 26 C -0.163 4.163 27 H 0.277 0.723 28 H 0.394 0.606 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.352 0.648 32 H 0.064 0.936 33 H 0.094 0.906 34 H 0.419 0.581 35 H 0.233 0.767 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.018 -19.505 9.318 21.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.212 4.212 3 Si 0.815 3.185 4 H -0.194 1.194 5 H -0.195 1.195 6 H -0.199 1.199 7 C -0.463 4.463 8 H 0.096 0.904 9 N -0.212 5.212 10 C 0.226 3.774 11 O -0.504 6.504 12 C -0.061 4.061 13 N -0.294 5.294 14 C -0.016 4.016 15 C 0.025 3.975 16 N -0.339 5.339 17 C 0.381 3.619 18 O -0.437 6.437 19 C -0.196 4.196 20 C -0.392 4.392 21 S 0.694 5.306 22 N -0.317 5.317 23 N -0.105 5.105 24 C -0.162 4.162 25 C -0.163 4.163 26 C -0.203 4.203 27 H 0.087 0.913 28 H 0.228 0.772 29 H 0.085 0.915 30 H 0.105 0.895 31 H 0.173 0.827 32 H 0.082 0.918 33 H 0.112 0.888 34 H 0.256 0.744 35 H 0.249 0.751 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.112 0.888 39 H 0.101 0.899 40 H 0.095 0.905 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.758 -18.996 10.590 21.762 hybrid contribution -1.424 0.881 -1.769 2.437 sum -0.667 -18.114 8.821 20.159 Atomic orbital electron populations 1.69673 1.06844 1.29260 1.50427 1.26026 0.96521 1.02373 0.96294 0.84947 0.77840 0.76927 0.78748 1.19408 1.19519 1.19927 1.19654 0.92641 0.84054 1.49912 0.90407 1.41936 1.09210 1.04796 1.65270 1.20876 0.88300 0.86086 0.82130 1.90499 1.15652 1.87934 1.56332 1.21373 0.94046 0.88347 1.02293 1.59792 1.20712 1.00015 1.48850 1.22699 0.95831 0.89309 0.93810 1.21249 0.91763 1.01612 0.82843 1.45705 1.15888 1.67447 1.04812 1.16835 0.85538 0.77385 0.82123 1.90792 1.17000 1.51223 1.84713 1.22651 0.91804 1.09084 0.96068 1.29287 1.10504 1.03606 0.95849 1.81052 0.90626 1.42907 1.15989 1.78335 1.28758 1.24063 1.00513 1.71603 1.05008 1.12120 1.21748 1.23130 0.97452 0.94749 1.00874 1.22770 0.96606 0.95353 1.01611 1.23604 1.00780 0.98339 0.97583 0.91320 0.77215 0.91463 0.89487 0.82742 0.91770 0.88812 0.74412 0.75085 0.89366 0.90556 0.88831 0.89879 0.90476 0.89735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.68 13.05 21.66 0.28 -50.40 16 2 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 3 Si 0.99 43.79 29.55 68.60 2.03 45.82 16 4 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 5 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 6 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 7 C -0.33 -19.35 9.68 84.04 0.81 -18.54 16 8 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 9 N -0.57 -30.30 5.29 -306.97 -1.62 -31.92 16 10 C 0.44 21.30 7.83 87.66 0.69 21.98 16 11 O -0.62 -34.66 15.86 -3.09 -0.05 -34.71 16 12 C 0.07 2.51 5.80 85.56 0.50 3.00 16 13 N -0.66 -19.88 5.36 -471.55 -2.53 -22.41 16 14 C 0.08 1.64 0.77 4.05 0.00 1.64 16 15 C 0.15 3.49 4.49 86.38 0.39 3.88 16 16 N -0.69 -18.89 5.38 -466.35 -2.51 -21.40 16 17 C 0.60 17.51 7.81 86.67 0.68 18.19 16 18 O -0.56 -17.97 16.79 -4.03 -0.07 -18.04 16 19 C -0.05 -1.28 6.87 41.36 0.28 -0.99 16 20 C -0.24 -4.28 11.21 67.76 0.76 -3.52 16 21 S 0.56 8.37 23.38 -56.49 -1.32 7.05 16 22 N -0.34 -8.74 12.49 37.02 0.46 -8.28 16 23 N -0.24 -7.00 11.24 -50.34 -0.57 -7.57 16 24 C -0.12 -2.19 7.36 31.18 0.23 -1.96 16 25 C -0.13 -1.77 7.74 31.18 0.24 -1.53 16 26 C -0.16 -2.92 6.61 31.12 0.21 -2.71 16 27 H 0.28 14.27 8.31 -92.71 -0.77 13.50 16 28 H 0.39 19.93 7.90 -92.71 -0.73 19.20 16 29 H 0.07 2.07 7.62 -2.39 -0.02 2.05 16 30 H 0.09 3.00 6.85 -2.39 -0.02 2.99 16 31 H 0.35 10.90 8.38 -89.70 -0.75 10.15 16 32 H 0.06 1.65 7.33 -2.39 -0.02 1.64 16 33 H 0.09 1.86 7.35 -2.39 -0.02 1.84 16 34 H 0.42 12.37 7.69 -92.71 -0.71 11.66 16 35 H 0.23 2.84 8.06 -2.91 -0.02 2.82 16 36 H 0.09 1.58 8.01 -2.38 -0.02 1.56 16 37 H 0.08 1.31 8.10 -2.39 -0.02 1.29 16 38 H 0.09 1.14 7.66 -2.39 -0.02 1.12 16 39 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.08 1.32 8.10 -2.39 -0.02 1.30 16 41 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -75.26 366.16 -1.71 -76.98 By element: Atomic # 1 Polarization: 46.71 SS G_CDS: -1.08 Total: 45.64 kcal Atomic # 6 Polarization: 13.98 SS G_CDS: 5.25 Total: 19.23 kcal Atomic # 7 Polarization: -135.49 SS G_CDS: -6.48 Total: -141.97 kcal Atomic # 8 Polarization: -52.63 SS G_CDS: -0.12 Total: -52.75 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 16 Polarization: 8.37 SS G_CDS: -1.32 Total: 7.05 kcal Total: -75.26 -1.71 -76.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717154649.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.183 kcal (2) G-P(sol) polarization free energy of solvation -75.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds