Wall clock time and date at job start Tue Mar 31 2020 23:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 110.30458 * 2 1 4 4 C 1.54386 * 110.34576 * 237.71001 * 2 1 3 5 5 N 1.48149 * 104.61714 * 264.99490 * 4 2 1 6 6 C 1.34780 * 127.83608 * 140.43545 * 5 4 2 7 7 O 1.21560 * 120.00116 * 180.02562 * 6 5 4 8 8 C 1.47756 * 119.99939 * 0.02737 * 6 5 4 9 9 C 1.39349 * 124.11427 * 180.02562 * 8 6 5 10 10 N 1.30093 * 112.14109 * 179.97438 * 9 8 6 11 11 S 1.55921 * 108.75861 * 359.97438 * 10 9 8 12 12 N 1.31494 * 124.11750 * 359.69720 * 8 6 5 13 13 C 1.48144 * 104.32583 * 320.41503 * 5 4 2 14 14 C 1.54284 * 110.34266 * 122.17101 * 2 1 3 15 15 H 1.09000 * 110.34726 * 237.85222 * 14 2 1 16 16 N 1.46901 * 110.34086 * 0.02562 * 14 2 1 17 17 C 1.46902 * 110.99844 * 204.99647 * 16 14 2 18 18 C 1.50702 * 109.47027 * 179.97438 * 17 16 14 19 19 O 1.21293 * 120.00255 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99928 * 179.72353 * 18 17 16 21 21 C 1.37101 * 120.00327 * 180.27606 * 20 18 17 22 22 H 1.08001 * 119.99426 * 0.02562 * 21 20 18 23 23 C 1.38942 * 120.00412 * 180.02562 * 21 20 18 24 24 N 1.31414 * 120.00005 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00325 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47047 * 89.99811 * 25 23 21 27 27 H 1.48501 * 109.47447 * 210.00167 * 25 23 21 28 28 H 1.48499 * 109.46902 * 330.00508 * 25 23 21 29 29 H 1.08996 * 109.47403 * 297.82464 * 1 2 3 30 30 H 1.08999 * 109.47026 * 57.83164 * 1 2 3 31 31 H 1.09004 * 109.46909 * 177.82677 * 1 2 3 32 32 H 1.08998 * 110.40771 * 23.78253 * 4 2 1 33 33 H 1.09004 * 110.40488 * 146.09749 * 4 2 1 34 34 H 1.07996 * 123.92746 * 359.97412 * 9 8 6 35 35 H 1.09003 * 110.40543 * 280.80455 * 13 5 4 36 36 H 1.08994 * 110.40720 * 158.36766 * 13 5 4 37 37 H 1.00902 * 111.00235 * 81.04884 * 16 14 2 38 38 H 1.09004 * 109.47131 * 60.00016 * 17 16 14 39 39 H 1.08994 * 109.47471 * 299.99766 * 17 16 14 40 40 H 0.97000 * 120.00317 * 0.28382 * 20 18 17 41 41 H 0.96996 * 120.00330 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0667 -0.7733 -1.2237 5 7 2.3140 -2.1445 -0.7204 6 6 2.0778 -3.3119 -1.3513 7 8 2.3366 -4.3640 -0.8000 8 6 1.5044 -3.3129 -2.7130 9 6 1.2257 -4.4668 -3.4429 10 7 0.7255 -4.1978 -4.6133 11 16 0.6200 -2.6501 -4.7699 12 7 1.1892 -2.2252 -3.3814 13 6 2.8802 -1.9416 0.6335 14 6 2.0663 -0.7702 1.2245 15 1 2.7080 -0.1264 1.8260 16 7 0.9523 -1.2807 2.0348 17 6 1.3632 -1.4748 3.4317 18 6 0.1969 -1.9973 4.2304 19 8 -0.8714 -2.1895 3.6890 20 7 0.3425 -2.2567 5.5449 21 6 -0.7169 -2.7374 6.2703 22 1 -1.6681 -2.9086 5.7882 23 6 -0.5670 -3.0044 7.6256 24 7 0.5903 -2.7956 8.2123 25 14 -2.0106 -3.6587 8.6141 26 1 -2.0052 -5.1431 8.5748 27 1 -1.8951 -3.2003 10.0218 28 1 -3.2794 -3.1528 8.0313 29 1 -0.3634 0.4797 0.9088 30 1 -0.3633 0.5471 -0.8699 31 1 -0.3633 -1.0270 -0.0390 32 1 1.3224 -0.7890 -2.0198 33 1 2.9939 -0.3244 -1.5801 34 1 1.4041 -5.4679 -3.0791 35 1 3.9354 -1.6763 0.5683 36 1 2.7494 -2.8387 1.2385 37 1 0.5829 -2.1347 1.6446 38 1 1.6918 -0.5231 3.8494 39 1 2.1827 -2.1921 3.4731 40 1 1.1968 -2.1032 5.9779 41 1 0.6949 -2.9816 9.1585 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717275079.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:24 Heat of formation + Delta-G solvation = 12.084622 kcal Electronic energy + Delta-G solvation = -26911.584467 eV Core-core repulsion = 22954.411237 eV Total energy + Delta-G solvation = -3957.173230 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.50506 -39.97207 -38.38930 -37.77425 -34.77869 -33.98878 -33.61075 -32.23688 -31.18866 -29.30795 -27.77470 -26.61483 -25.95193 -24.27524 -23.51539 -22.22179 -20.05897 -19.91260 -19.53327 -19.25131 -17.92892 -17.45278 -16.73291 -16.20709 -16.03873 -15.99509 -15.39420 -14.99959 -14.60154 -14.47747 -14.04829 -13.90474 -13.61353 -13.53515 -13.07408 -12.96949 -12.43548 -12.37383 -12.14172 -11.92786 -11.67541 -11.66312 -11.56668 -11.51130 -11.26178 -11.12847 -10.99915 -10.83585 -10.57459 -10.38063 -10.26797 -10.20194 -9.59662 -9.49369 -9.03558 -8.43706 -8.03187 -7.93995 -6.40186 -3.80839 0.04117 1.00134 1.20314 1.24537 2.59987 2.83843 3.19268 3.27746 3.33780 3.92637 3.98815 4.08629 4.25793 4.31858 4.42494 4.65715 4.74210 4.97181 5.07809 5.12824 5.16222 5.25150 5.30934 5.42516 5.47572 5.63723 5.66163 5.72909 5.82863 5.95692 5.95893 6.09348 6.13587 6.27252 6.31450 6.65325 7.16987 7.25066 7.56839 7.59881 7.76450 8.07949 8.62896 9.19647 9.56022 10.07497 10.77620 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018689 B = 0.002373 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.859952 B =11796.266647 C =12270.027056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.096 4.096 3 H 0.086 0.914 4 C 0.093 3.907 5 N -0.598 5.598 6 C 0.621 3.379 7 O -0.522 6.522 8 C 0.021 3.979 9 C 0.091 3.909 10 N -0.576 5.576 11 S 0.709 5.291 12 N -0.540 5.540 13 C 0.075 3.925 14 C 0.076 3.924 15 H 0.097 0.903 16 N -0.652 5.652 17 C 0.047 3.953 18 C 0.441 3.559 19 O -0.583 6.583 20 N -0.564 5.564 21 C -0.298 4.298 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 H 0.073 0.927 30 H 0.040 0.960 31 H 0.052 0.948 32 H 0.111 0.889 33 H 0.069 0.931 34 H 0.215 0.785 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.352 0.648 38 H 0.087 0.913 39 H 0.044 0.956 40 H 0.392 0.608 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.168 5.541 -24.432 26.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.116 4.116 3 H 0.105 0.895 4 C -0.030 4.030 5 N -0.331 5.331 6 C 0.404 3.596 7 O -0.397 6.397 8 C -0.154 4.154 9 C -0.102 4.102 10 N -0.416 5.416 11 S 0.751 5.249 12 N -0.390 5.390 13 C -0.050 4.050 14 C -0.037 4.037 15 H 0.115 0.885 16 N -0.283 5.283 17 C -0.086 4.086 18 C 0.227 3.773 19 O -0.467 6.467 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.092 0.908 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.129 0.871 33 H 0.087 0.913 34 H 0.231 0.769 35 H 0.097 0.903 36 H 0.106 0.894 37 H 0.173 0.827 38 H 0.106 0.894 39 H 0.062 0.938 40 H 0.225 0.775 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.610 6.453 -25.852 27.230 hybrid contribution 1.143 -2.050 2.201 3.218 sum 6.753 4.403 -23.651 24.988 Atomic orbital electron populations 1.21478 0.92932 1.02077 1.01336 1.22190 0.98142 0.98626 0.92653 0.89534 1.22986 1.01767 0.80198 0.98097 1.48575 1.61345 1.05733 1.17459 1.16279 0.78264 0.82864 0.82202 1.90874 1.52941 1.30288 1.65621 1.22443 1.06256 0.87797 0.98943 1.23790 0.96560 1.02334 0.87547 1.72270 1.23162 1.22229 1.23959 1.79142 1.41657 0.92395 1.11697 1.72678 1.19467 1.34249 1.12570 1.23302 0.98052 1.00570 0.83027 1.22640 0.91615 0.94926 0.94481 0.88518 1.60296 1.29845 1.37431 1.00771 1.21762 0.96424 1.00892 0.89511 1.19788 0.89604 0.84735 0.83195 1.90528 1.28387 1.57422 1.70355 1.41860 1.13863 1.57262 1.07076 1.19693 0.92938 1.39255 0.90893 0.87970 1.25253 0.97913 0.97771 0.97017 1.69610 1.23564 1.48921 1.12275 0.85863 0.81050 0.78940 0.78473 1.20428 1.20928 1.19418 0.90832 0.94123 0.92850 0.87081 0.91254 0.76860 0.90346 0.89443 0.82701 0.89439 0.93790 0.77473 0.91894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.42 8.10 37.16 0.30 -1.12 16 2 C -0.10 -0.94 3.66 -89.22 -0.33 -1.26 16 3 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 4 C 0.09 0.86 6.19 -2.41 -0.01 0.85 16 5 N -0.60 -6.92 3.32 -170.45 -0.57 -7.48 16 6 C 0.62 8.12 7.92 -12.37 -0.10 8.02 16 7 O -0.52 -8.33 17.07 5.31 0.09 -8.24 16 8 C 0.02 0.22 6.73 -83.71 -0.56 -0.34 16 9 C 0.09 0.89 11.22 -17.87 -0.20 0.69 16 10 N -0.58 -5.36 11.41 19.43 0.22 -5.13 16 11 S 0.71 4.93 23.69 -107.50 -2.55 2.38 16 12 N -0.54 -5.00 8.27 23.18 0.19 -4.80 16 13 C 0.07 0.83 6.49 -2.41 -0.02 0.82 16 14 C 0.08 0.84 3.37 -66.31 -0.22 0.62 16 15 H 0.10 0.94 7.82 -51.93 -0.41 0.53 16 16 N -0.65 -10.03 4.10 -106.51 -0.44 -10.46 16 17 C 0.05 0.79 6.02 -4.97 -0.03 0.76 16 18 C 0.44 10.39 7.82 -10.98 -0.09 10.30 16 19 O -0.58 -15.88 15.78 5.55 0.09 -15.80 16 20 N -0.56 -14.34 5.29 -10.96 -0.06 -14.39 16 21 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 22 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.70 13.05 55.50 0.72 -23.97 16 25 Si 0.93 21.28 29.55 -169.99 -5.02 16.26 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 28 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 29 H 0.07 1.01 7.84 -51.93 -0.41 0.61 16 30 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.74 7.57 -51.93 -0.39 0.35 16 32 H 0.11 1.06 5.11 -51.93 -0.27 0.80 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.22 1.77 8.06 -52.49 -0.42 1.34 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.09 1.17 7.73 -51.93 -0.40 0.76 16 37 H 0.35 6.15 7.74 -39.29 -0.30 5.85 16 38 H 0.09 1.34 8.07 -51.93 -0.42 0.92 16 39 H 0.04 0.68 8.12 -51.93 -0.42 0.26 16 40 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 41 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 359.53 15.07 5.42 5.42 Total: -1.00 -33.58 359.53 -8.36 -41.94 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -4.96 Total: 12.99 kcal Atomic # 6 Polarization: 12.80 SS G_CDS: -1.50 Total: 11.30 kcal Atomic # 7 Polarization: -66.33 SS G_CDS: 0.08 Total: -66.25 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: 0.18 Total: -24.04 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 4.93 SS G_CDS: -2.55 Total: 2.38 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.58 -8.36 -41.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717275079.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.026 kcal (2) G-P(sol) polarization free energy of solvation -33.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds