Wall clock time and date at job start Tue Mar 31 2020 23:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 110.30458 * 2 1 4 4 C 1.54386 * 110.34576 * 237.71001 * 2 1 3 5 5 N 1.48149 * 104.61714 * 264.99490 * 4 2 1 6 6 C 1.34780 * 127.83608 * 140.43545 * 5 4 2 7 7 O 1.21560 * 120.00116 * 180.02562 * 6 5 4 8 8 C 1.47756 * 119.99939 * 0.02737 * 6 5 4 9 9 C 1.39349 * 124.11427 * 180.02562 * 8 6 5 10 10 N 1.30093 * 112.14109 * 179.97438 * 9 8 6 11 11 S 1.55921 * 108.75861 * 359.97438 * 10 9 8 12 12 N 1.31494 * 124.11750 * 359.69720 * 8 6 5 13 13 C 1.48144 * 104.32583 * 320.41503 * 5 4 2 14 14 C 1.54284 * 110.34266 * 122.17101 * 2 1 3 15 15 H 1.09000 * 110.34726 * 237.85222 * 14 2 1 16 16 N 1.46901 * 110.34086 * 0.02562 * 14 2 1 17 17 C 1.46902 * 110.99844 * 204.99647 * 16 14 2 18 18 C 1.50702 * 109.47027 * 179.97438 * 17 16 14 19 19 O 1.21293 * 120.00255 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99928 * 179.72353 * 18 17 16 21 21 C 1.37101 * 120.00327 * 180.27606 * 20 18 17 22 22 H 1.08001 * 119.99426 * 0.02562 * 21 20 18 23 23 C 1.38942 * 120.00412 * 180.02562 * 21 20 18 24 24 N 1.31414 * 120.00005 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00325 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47047 * 89.99811 * 25 23 21 27 27 H 1.48501 * 109.47447 * 210.00167 * 25 23 21 28 28 H 1.48499 * 109.46902 * 330.00508 * 25 23 21 29 29 H 1.08996 * 109.47403 * 297.82464 * 1 2 3 30 30 H 1.08999 * 109.47026 * 57.83164 * 1 2 3 31 31 H 1.09004 * 109.46909 * 177.82677 * 1 2 3 32 32 H 1.08998 * 110.40771 * 23.78253 * 4 2 1 33 33 H 1.09004 * 110.40488 * 146.09749 * 4 2 1 34 34 H 1.07996 * 123.92746 * 359.97412 * 9 8 6 35 35 H 1.09003 * 110.40543 * 280.80455 * 13 5 4 36 36 H 1.08994 * 110.40720 * 158.36766 * 13 5 4 37 37 H 1.00902 * 111.00235 * 81.04884 * 16 14 2 38 38 H 1.09004 * 109.47131 * 60.00016 * 17 16 14 39 39 H 1.08994 * 109.47471 * 299.99766 * 17 16 14 40 40 H 0.97000 * 120.00317 * 0.28382 * 20 18 17 41 41 H 0.96996 * 120.00330 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0667 -0.7733 -1.2237 5 7 2.3140 -2.1445 -0.7204 6 6 2.0778 -3.3119 -1.3513 7 8 2.3366 -4.3640 -0.8000 8 6 1.5044 -3.3129 -2.7130 9 6 1.2257 -4.4668 -3.4429 10 7 0.7255 -4.1978 -4.6133 11 16 0.6200 -2.6501 -4.7699 12 7 1.1892 -2.2252 -3.3814 13 6 2.8802 -1.9416 0.6335 14 6 2.0663 -0.7702 1.2245 15 1 2.7080 -0.1264 1.8260 16 7 0.9523 -1.2807 2.0348 17 6 1.3632 -1.4748 3.4317 18 6 0.1969 -1.9973 4.2304 19 8 -0.8714 -2.1895 3.6890 20 7 0.3425 -2.2567 5.5449 21 6 -0.7169 -2.7374 6.2703 22 1 -1.6681 -2.9086 5.7882 23 6 -0.5670 -3.0044 7.6256 24 7 0.5903 -2.7956 8.2123 25 14 -2.0106 -3.6587 8.6141 26 1 -2.0052 -5.1431 8.5748 27 1 -1.8951 -3.2003 10.0218 28 1 -3.2794 -3.1528 8.0313 29 1 -0.3634 0.4797 0.9088 30 1 -0.3633 0.5471 -0.8699 31 1 -0.3633 -1.0270 -0.0390 32 1 1.3224 -0.7890 -2.0198 33 1 2.9939 -0.3244 -1.5801 34 1 1.4041 -5.4679 -3.0791 35 1 3.9354 -1.6763 0.5683 36 1 2.7494 -2.8387 1.2385 37 1 0.5829 -2.1347 1.6446 38 1 1.6918 -0.5231 3.8494 39 1 2.1827 -2.1921 3.4731 40 1 1.1968 -2.1032 5.9779 41 1 0.6949 -2.9816 9.1585 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717275079.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:24 Heat of formation + Delta-G solvation = -14.147589 kcal Electronic energy + Delta-G solvation = -26912.721981 eV Core-core repulsion = 22954.411237 eV Total energy + Delta-G solvation = -3958.310744 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.27819 -40.88774 -40.03169 -38.97672 -36.17875 -35.57076 -34.59447 -33.33477 -33.10163 -30.33863 -28.75472 -27.73569 -27.18338 -25.78061 -24.59678 -23.04325 -21.18848 -20.79649 -20.74835 -20.27259 -19.92937 -18.44239 -17.65160 -17.59312 -17.09035 -16.97147 -16.58541 -16.27838 -16.06414 -15.93468 -15.37533 -15.31509 -14.86462 -14.54136 -14.18610 -14.09353 -13.65927 -13.56268 -13.33259 -13.15927 -13.07333 -12.87564 -12.83997 -12.43829 -12.42225 -12.28995 -12.13847 -12.07449 -12.00093 -11.74631 -11.51568 -11.44260 -11.13567 -10.35395 -10.29387 -10.01914 -9.90836 -9.22439 -8.47332 -5.95867 -0.68929 0.31416 0.40627 0.61198 1.36850 1.40386 1.53177 1.76838 1.93729 2.05864 2.28441 2.91347 3.20006 3.23143 3.45414 3.51918 3.61238 3.80835 3.98951 4.12903 4.26109 4.33659 4.38774 4.43664 4.50891 4.56837 4.63229 4.68262 4.82246 4.86779 4.96560 5.13763 5.22507 5.33546 5.39762 5.41121 5.65308 5.91817 6.13439 6.26565 6.35481 6.60133 6.83427 7.12459 7.56378 8.12217 8.70131 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018689 B = 0.002373 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.859952 B =11796.266647 C =12270.027056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.089 4.089 3 H 0.119 0.881 4 C 0.096 3.904 5 N -0.600 5.600 6 C 0.614 3.386 7 O -0.566 6.566 8 C -0.001 4.001 9 C 0.085 3.915 10 N -0.599 5.599 11 S 0.797 5.203 12 N -0.549 5.549 13 C 0.075 3.925 14 C 0.076 3.924 15 H 0.123 0.877 16 N -0.662 5.662 17 C 0.062 3.938 18 C 0.437 3.563 19 O -0.625 6.625 20 N -0.574 5.574 21 C -0.333 4.333 22 H 0.076 0.924 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.991 3.009 26 H -0.272 1.272 27 H -0.269 1.269 28 H -0.274 1.274 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.022 0.978 32 H 0.110 0.890 33 H 0.096 0.904 34 H 0.218 0.782 35 H 0.107 0.893 36 H 0.059 0.941 37 H 0.336 0.664 38 H 0.114 0.886 39 H 0.063 0.937 40 H 0.397 0.603 41 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.152 7.315 -25.662 27.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.108 4.108 3 H 0.137 0.863 4 C -0.026 4.026 5 N -0.332 5.332 6 C 0.398 3.602 7 O -0.445 6.445 8 C -0.173 4.173 9 C -0.106 4.106 10 N -0.441 5.441 11 S 0.839 5.161 12 N -0.402 5.402 13 C -0.049 4.049 14 C -0.035 4.035 15 H 0.141 0.859 16 N -0.292 5.292 17 C -0.070 4.070 18 C 0.225 3.775 19 O -0.512 6.512 20 N -0.211 5.211 21 C -0.463 4.463 22 H 0.094 0.906 23 C -0.212 4.212 24 N -0.561 5.561 25 Si 0.815 3.185 26 H -0.198 1.198 27 H -0.193 1.193 28 H -0.198 1.198 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.042 0.958 32 H 0.128 0.872 33 H 0.114 0.886 34 H 0.234 0.766 35 H 0.124 0.876 36 H 0.078 0.922 37 H 0.155 0.845 38 H 0.132 0.868 39 H 0.081 0.919 40 H 0.231 0.769 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.639 8.260 -27.070 29.070 hybrid contribution 0.779 -2.504 2.413 3.563 sum 7.419 5.756 -24.657 26.384 Atomic orbital electron populations 1.21383 0.94732 1.00089 1.01014 1.22223 0.96440 1.00158 0.92013 0.86319 1.23120 1.03035 0.78788 0.97702 1.48717 1.60617 1.06306 1.17558 1.16620 0.77912 0.82691 0.82993 1.90835 1.54971 1.31738 1.66949 1.22084 1.08205 0.88550 0.98491 1.23779 0.96682 1.02488 0.87652 1.72142 1.23783 1.24262 1.23951 1.78801 1.38088 0.90272 1.08985 1.72452 1.19678 1.34291 1.13745 1.23323 0.99562 0.99330 0.82667 1.22827 0.90724 0.95146 0.94818 0.85904 1.60334 1.32039 1.36516 1.00311 1.21637 0.93566 1.02150 0.89647 1.20960 0.90837 0.82948 0.82804 1.90495 1.30828 1.58778 1.71095 1.41930 1.13485 1.57827 1.07856 1.19633 0.93076 1.41606 0.91994 0.90591 1.26017 1.00531 0.97368 0.97322 1.69665 1.24753 1.48816 1.12834 0.84952 0.77673 0.78451 0.77410 1.19780 1.19317 1.19844 0.93112 0.92218 0.95836 0.87197 0.88564 0.76606 0.87550 0.92193 0.84538 0.86775 0.91931 0.76918 0.91280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.59 8.10 71.98 0.58 -2.01 16 2 C -0.09 -1.49 3.66 -9.89 -0.04 -1.52 16 3 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 4 C 0.10 1.53 6.19 86.53 0.54 2.07 16 5 N -0.60 -13.37 3.32 -811.45 -2.69 -16.06 16 6 C 0.61 16.36 7.92 86.76 0.69 17.05 16 7 O -0.57 -19.05 17.07 -3.91 -0.07 -19.12 16 8 C 0.00 -0.02 6.73 41.98 0.28 0.26 16 9 C 0.09 1.67 11.22 85.22 0.96 2.62 16 10 N -0.60 -10.48 11.41 -92.43 -1.05 -11.54 16 11 S 0.80 9.36 23.69 -56.49 -1.34 8.02 16 12 N -0.55 -9.29 8.27 -80.58 -0.67 -9.96 16 13 C 0.08 1.58 6.49 86.54 0.56 2.14 16 14 C 0.08 1.53 3.37 45.82 0.15 1.68 16 15 H 0.12 1.90 7.82 -2.39 -0.02 1.88 16 16 N -0.66 -20.17 4.10 -490.88 -2.01 -22.18 16 17 C 0.06 2.07 6.02 85.56 0.51 2.59 16 18 C 0.44 21.06 7.82 87.66 0.69 21.74 16 19 O -0.63 -35.51 15.78 -3.07 -0.05 -35.56 16 20 N -0.57 -29.86 5.29 -306.98 -1.62 -31.48 16 21 C -0.33 -19.32 9.68 84.04 0.81 -18.50 16 22 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 23 C -0.01 -0.69 5.50 84.92 0.47 -0.22 16 24 N -0.92 -50.16 13.05 21.66 0.28 -49.88 16 25 Si 0.99 43.74 29.55 68.60 2.03 45.77 16 26 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 27 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 28 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 29 H 0.05 1.38 7.84 -2.39 -0.02 1.36 16 30 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.02 0.65 7.57 -2.38 -0.02 0.64 16 32 H 0.11 1.84 5.11 -2.39 -0.01 1.83 16 33 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 34 H 0.22 3.82 8.06 -2.91 -0.02 3.80 16 35 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.06 1.62 7.73 -2.39 -0.02 1.60 16 37 H 0.34 12.18 7.74 -89.69 -0.69 11.49 16 38 H 0.11 3.24 8.07 -2.38 -0.02 3.22 16 39 H 0.06 1.88 8.12 -2.39 -0.02 1.86 16 40 H 0.40 19.48 7.90 -92.71 -0.73 18.75 16 41 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 Total: -1.00 -76.08 359.53 -1.31 -77.39 By element: Atomic # 1 Polarization: 37.04 SS G_CDS: -0.32 Total: 36.71 kcal Atomic # 6 Polarization: 21.69 SS G_CDS: 6.20 Total: 27.89 kcal Atomic # 7 Polarization: -133.34 SS G_CDS: -7.77 Total: -141.10 kcal Atomic # 8 Polarization: -54.56 SS G_CDS: -0.12 Total: -54.68 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 16 Polarization: 9.36 SS G_CDS: -1.34 Total: 8.02 kcal Total: -76.08 -1.31 -77.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717275079.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.240 kcal (2) G-P(sol) polarization free energy of solvation -76.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds