Wall clock time and date at job start Tue Mar 31 2020 23:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 110.77989 * 2 1 4 4 C 1.54327 * 110.72271 * 123.24252 * 2 1 3 5 5 N 1.47022 * 107.27336 * 96.16968 * 4 2 1 6 6 C 1.34776 * 125.64758 * 178.97550 * 5 4 2 7 7 O 1.21566 * 120.00000 * 179.97438 * 6 5 4 8 8 C 1.47752 * 119.99932 * 359.97438 * 6 5 4 9 9 C 1.39349 * 124.11685 * 179.97438 * 8 6 5 10 10 N 1.30094 * 112.14848 * 179.97438 * 9 8 6 11 11 S 1.55919 * 108.75098 * 359.97438 * 10 9 8 12 12 N 1.31486 * 124.11777 * 359.70135 * 8 6 5 13 13 C 1.47425 * 108.70334 * 358.94217 * 5 4 2 14 14 C 1.54915 * 104.83334 * 24.12789 * 13 5 4 15 15 H 1.09001 * 111.00387 * 81.05917 * 14 13 5 16 16 N 1.46899 * 111.00365 * 204.91810 * 14 13 5 17 17 C 1.46895 * 110.99707 * 267.19539 * 16 14 13 18 18 C 1.50701 * 109.47157 * 180.02562 * 17 16 14 19 19 O 1.21292 * 119.99791 * 0.02562 * 18 17 16 20 20 N 1.34777 * 120.00335 * 179.97438 * 18 17 16 21 21 C 1.37097 * 119.99971 * 179.97438 * 20 18 17 22 22 H 1.07998 * 120.00590 * 0.02562 * 21 20 18 23 23 C 1.38953 * 119.99742 * 179.97438 * 21 20 18 24 24 N 1.31409 * 119.99736 * 179.97438 * 23 21 20 25 25 Si 1.86806 * 120.00070 * 0.02562 * 23 21 20 26 26 H 1.48491 * 109.47362 * 89.99296 * 25 23 21 27 27 H 1.48502 * 109.46897 * 209.99613 * 25 23 21 28 28 H 1.48497 * 109.46778 * 329.99126 * 25 23 21 29 29 H 1.08998 * 109.47167 * 298.20885 * 1 2 3 30 30 H 1.08996 * 109.47605 * 58.21751 * 1 2 3 31 31 H 1.09008 * 109.46597 * 178.21292 * 1 2 3 32 32 H 1.08997 * 109.87800 * 215.59151 * 4 2 1 33 33 H 1.09000 * 109.87987 * 336.59391 * 4 2 1 34 34 H 1.08002 * 123.92757 * 359.94179 * 9 8 6 35 35 H 1.08997 * 110.36855 * 142.96531 * 13 5 4 36 36 H 1.08999 * 110.36490 * 265.17846 * 13 5 4 37 37 H 1.00894 * 111.00084 * 31.14769 * 16 14 13 38 38 H 1.09005 * 109.47344 * 299.99945 * 17 16 14 39 39 H 1.08999 * 109.47829 * 60.00244 * 17 16 14 40 40 H 0.96999 * 119.99677 * 0.02562 * 20 18 17 41 41 H 0.97005 * 120.00079 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0760 -0.7913 1.2072 5 7 2.3716 -2.1532 0.7389 6 6 2.8851 -3.1478 1.4896 7 8 3.0890 -4.2394 0.9951 8 6 3.2001 -2.9114 2.9137 9 6 3.7317 -3.8761 3.7672 10 7 3.9182 -3.4175 4.9702 11 16 3.4686 -1.9252 5.0130 12 7 3.0177 -1.7636 3.5287 13 6 2.0126 -2.2509 -0.6876 14 6 2.0789 -0.7954 -1.2139 15 1 3.1061 -0.5072 -1.4375 16 7 1.2172 -0.6213 -2.3908 17 6 1.9720 -0.8371 -3.6324 18 6 1.0573 -0.6498 -4.8153 19 8 -0.1086 -0.3641 -4.6411 20 7 1.5349 -0.7987 -6.0668 21 6 0.7026 -0.6288 -7.1428 22 1 -0.3357 -0.3752 -6.9878 23 6 1.1952 -0.7818 -8.4331 24 7 0.3973 -0.6194 -9.4645 25 14 2.9913 -1.2197 -8.7014 26 1 3.1409 -2.6967 -8.7355 27 1 3.4535 -0.6454 -9.9904 28 1 3.8071 -0.6650 -7.5915 29 1 -0.3633 0.4858 0.9056 30 1 -0.3634 0.5412 -0.8735 31 1 -0.3633 -1.0273 -0.0321 32 1 2.9868 -0.3207 1.5775 33 1 1.3274 -0.8232 1.9988 34 1 3.9617 -4.8873 3.4652 35 1 2.7293 -2.8787 -1.2170 36 1 1.0047 -2.6507 -0.7986 37 1 0.4148 -1.2311 -2.3448 38 1 2.7906 -0.1196 -3.6894 39 1 2.3751 -1.8498 -3.6412 40 1 2.4673 -1.0268 -6.2060 41 1 0.7410 -0.7266 -10.3653 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717275080.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:27 Heat of formation + Delta-G solvation = -16.634614 kcal Electronic energy + Delta-G solvation = -26451.491945 eV Core-core repulsion = 22493.073356 eV Total energy + Delta-G solvation = -3958.418589 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.28765 -40.92885 -40.18515 -39.02375 -36.27264 -35.68531 -34.62583 -33.73830 -33.17731 -30.33579 -28.78963 -27.67381 -27.48511 -25.70003 -24.40261 -23.07783 -21.30635 -20.90964 -20.70269 -20.36986 -20.24920 -18.51854 -17.67195 -17.42452 -17.18704 -17.03161 -16.65669 -16.46342 -16.05745 -15.82401 -15.27959 -15.17382 -14.95931 -14.50995 -14.37298 -14.14574 -14.02585 -13.63692 -13.47805 -13.29013 -13.16646 -13.06693 -12.86750 -12.46955 -12.40209 -12.29642 -12.24914 -11.99888 -11.96258 -11.70430 -11.56817 -11.49915 -11.22946 -10.41090 -10.28433 -10.23590 -9.80231 -9.35248 -8.40203 -6.00811 -0.66316 0.33728 0.41860 0.62407 1.31206 1.36479 1.45218 1.72310 1.91962 1.97681 2.23850 2.71393 3.16152 3.17290 3.37275 3.47621 3.63233 3.70977 3.98474 4.01996 4.12773 4.20127 4.25769 4.42782 4.46412 4.53903 4.59292 4.69465 4.75553 4.81276 4.96153 5.04380 5.17907 5.32021 5.36625 5.53298 5.55495 5.90575 6.02724 6.24886 6.30604 6.60623 6.80776 6.89601 7.41383 7.97828 8.77340 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.025460 B = 0.002092 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.507822 B =13380.612349 C =14052.353390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.087 4.087 3 H 0.108 0.892 4 C 0.121 3.879 5 N -0.593 5.593 6 C 0.612 3.388 7 O -0.561 6.561 8 C -0.003 4.003 9 C 0.089 3.911 10 N -0.601 5.601 11 S 0.796 5.204 12 N -0.552 5.552 13 C 0.079 3.921 14 C 0.086 3.914 15 H 0.111 0.889 16 N -0.659 5.659 17 C 0.058 3.942 18 C 0.450 3.550 19 O -0.613 6.613 20 N -0.592 5.592 21 C -0.327 4.327 22 H 0.056 0.944 23 C -0.017 4.017 24 N -0.935 5.935 25 Si 0.964 3.036 26 H -0.259 1.259 27 H -0.276 1.276 28 H -0.230 1.230 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.041 0.959 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.221 0.779 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.348 0.652 38 H 0.119 0.881 39 H 0.077 0.923 40 H 0.390 0.610 41 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.761 -1.357 31.779 34.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.106 4.106 3 H 0.127 0.873 4 C -0.001 4.001 5 N -0.325 5.325 6 C 0.396 3.604 7 O -0.439 6.439 8 C -0.175 4.175 9 C -0.103 4.103 10 N -0.443 5.443 11 S 0.837 5.163 12 N -0.404 5.404 13 C -0.046 4.046 14 C -0.025 4.025 15 H 0.129 0.871 16 N -0.290 5.290 17 C -0.074 4.074 18 C 0.237 3.763 19 O -0.497 6.497 20 N -0.234 5.234 21 C -0.456 4.456 22 H 0.074 0.926 23 C -0.215 4.215 24 N -0.576 5.576 25 Si 0.784 3.216 26 H -0.184 1.184 27 H -0.201 1.201 28 H -0.153 1.153 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.237 0.763 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.168 0.832 38 H 0.137 0.863 39 H 0.095 0.905 40 H 0.225 0.775 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.157 0.250 33.028 35.195 hybrid contribution 0.394 -2.532 -2.314 3.453 sum 12.551 -2.281 30.714 33.258 Atomic orbital electron populations 1.21632 0.94122 1.01267 1.02264 1.22274 0.96717 0.99971 0.91672 0.87340 1.22336 1.01588 0.79580 0.96644 1.48142 1.60619 1.12609 1.11119 1.16638 0.77444 0.83093 0.83223 1.90832 1.55674 1.24634 1.72776 1.22068 1.08184 0.89604 0.97689 1.23810 0.97337 1.03510 0.85652 1.72170 1.26580 1.19081 1.26470 1.78871 1.34316 1.00432 1.02687 1.72477 1.23520 1.29038 1.15361 1.23150 1.00968 0.99859 0.80615 1.22873 0.98011 0.91663 0.89963 0.87098 1.60166 1.09107 1.60190 0.99548 1.21749 0.95503 1.02859 0.87324 1.20960 0.89233 0.81457 0.84605 1.90552 1.20437 1.52816 1.85879 1.42040 1.11502 1.64567 1.05254 1.18999 0.94299 1.47017 0.85267 0.92594 1.26122 1.04700 0.96699 0.94007 1.69806 1.38545 1.49765 0.99435 0.85372 0.76902 0.79614 0.79684 1.18358 1.20144 1.15270 0.91457 0.92414 0.94009 0.89534 0.90152 0.76318 0.90467 0.91350 0.83182 0.86290 0.90522 0.77489 0.91204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 8.27 71.98 0.60 -1.89 16 2 C -0.09 -1.37 3.56 -9.60 -0.03 -1.40 16 3 H 0.11 1.47 8.14 -2.39 -0.02 1.46 16 4 C 0.12 1.79 5.07 86.73 0.44 2.23 16 5 N -0.59 -11.50 3.33 -815.29 -2.71 -14.21 16 6 C 0.61 13.50 7.85 86.76 0.68 14.18 16 7 O -0.56 -15.75 17.06 -3.92 -0.07 -15.82 16 8 C 0.00 -0.05 6.71 41.98 0.28 0.23 16 9 C 0.09 1.34 11.22 85.22 0.96 2.29 16 10 N -0.60 -8.32 11.41 -92.48 -1.06 -9.38 16 11 S 0.80 6.89 23.69 -56.49 -1.34 5.55 16 12 N -0.55 -7.49 8.65 -80.60 -0.70 -8.19 16 13 C 0.08 1.58 6.18 86.86 0.54 2.12 16 14 C 0.09 1.59 3.17 46.31 0.15 1.74 16 15 H 0.11 1.76 7.83 -2.39 -0.02 1.74 16 16 N -0.66 -17.10 4.95 -488.39 -2.42 -19.52 16 17 C 0.06 1.62 6.03 85.56 0.52 2.13 16 18 C 0.45 19.52 7.82 87.66 0.69 20.21 16 19 O -0.61 -32.92 15.78 -3.07 -0.05 -32.97 16 20 N -0.59 -27.32 5.09 -306.98 -1.56 -28.88 16 21 C -0.33 -18.96 10.16 84.04 0.85 -18.11 16 22 H 0.06 3.88 7.39 -2.91 -0.02 3.85 16 23 C -0.02 -0.93 5.50 84.93 0.47 -0.46 16 24 N -0.93 -56.33 13.96 21.66 0.30 -56.02 16 25 Si 0.96 38.60 27.74 68.60 1.90 40.50 16 26 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 27 H -0.28 -11.03 7.11 99.48 0.71 -10.33 16 28 H -0.23 -7.65 6.52 99.48 0.65 -7.00 16 29 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.06 1.35 7.65 -2.39 -0.02 1.33 16 31 H 0.04 0.82 7.45 -2.38 -0.02 0.80 16 32 H 0.09 1.14 7.57 -2.39 -0.02 1.12 16 33 H 0.08 1.17 7.40 -2.39 -0.02 1.16 16 34 H 0.22 2.77 8.06 -2.91 -0.02 2.75 16 35 H 0.08 1.64 8.04 -2.39 -0.02 1.62 16 36 H 0.07 1.49 7.33 -2.39 -0.02 1.47 16 37 H 0.35 10.01 7.52 -89.70 -0.67 9.33 16 38 H 0.12 2.72 8.09 -2.38 -0.02 2.71 16 39 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.39 14.83 5.76 -92.71 -0.53 14.30 16 41 H 0.28 15.35 8.31 -92.70 -0.77 14.58 16 Total: -1.00 -79.49 356.73 -1.73 -81.22 By element: Atomic # 1 Polarization: 34.62 SS G_CDS: -0.17 Total: 34.45 kcal Atomic # 6 Polarization: 17.14 SS G_CDS: 6.13 Total: 23.27 kcal Atomic # 7 Polarization: -128.06 SS G_CDS: -8.14 Total: -136.20 kcal Atomic # 8 Polarization: -48.67 SS G_CDS: -0.12 Total: -48.79 kcal Atomic # 14 Polarization: 38.60 SS G_CDS: 1.90 Total: 40.50 kcal Atomic # 16 Polarization: 6.89 SS G_CDS: -1.34 Total: 5.55 kcal Total: -79.49 -1.73 -81.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717275080.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.587 kcal (2) G-P(sol) polarization free energy of solvation -79.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds