Wall clock time and date at job start Tue Mar 31 2020 23:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 110.79875 * 2 1 4 4 C 1.54950 * 110.73615 * 123.28388 * 2 1 3 5 5 N 1.48118 * 103.25309 * 155.71540 * 4 2 1 6 6 C 1.34777 * 127.02956 * 140.67459 * 5 4 2 7 7 O 1.21566 * 119.99756 * 180.02562 * 6 5 4 8 8 C 1.47748 * 120.00321 * 0.04344 * 6 5 4 9 9 C 1.39354 * 124.11597 * 180.02562 * 8 6 5 10 10 N 1.30095 * 112.14368 * 179.97438 * 9 8 6 11 11 S 1.55919 * 108.75386 * 359.97438 * 10 9 8 12 12 N 1.31492 * 124.11365 * 359.69687 * 8 6 5 13 13 C 1.47481 * 105.93497 * 320.70798 * 5 4 2 14 14 C 1.54008 * 107.08351 * 25.44836 * 13 5 4 15 15 H 1.08993 * 110.32453 * 239.69967 * 14 13 5 16 16 N 1.46903 * 110.32675 * 117.58538 * 14 13 5 17 17 C 1.46896 * 110.99955 * 86.45553 * 16 14 13 18 18 C 1.50701 * 109.46946 * 180.02562 * 17 16 14 19 19 O 1.21293 * 120.00278 * 359.97438 * 18 17 16 20 20 N 1.34777 * 120.00078 * 180.02562 * 18 17 16 21 21 C 1.37095 * 119.99959 * 179.97438 * 20 18 17 22 22 H 1.07991 * 120.00408 * 359.97438 * 21 20 18 23 23 C 1.38950 * 119.99816 * 179.97438 * 21 20 18 24 24 N 1.31414 * 119.99922 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00126 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47228 * 179.97438 * 25 23 21 27 27 H 1.48501 * 109.46793 * 299.99915 * 25 23 21 28 28 H 1.48500 * 109.47000 * 60.00007 * 25 23 21 29 29 H 1.08999 * 109.47125 * 183.29153 * 1 2 3 30 30 H 1.09000 * 109.47762 * 303.29604 * 1 2 3 31 31 H 1.09006 * 109.46715 * 63.29651 * 1 2 3 32 32 H 1.09001 * 110.65950 * 37.27368 * 4 2 1 33 33 H 1.08995 * 110.80445 * 274.22736 * 4 2 1 34 34 H 1.07994 * 123.92801 * 359.97438 * 9 8 6 35 35 H 1.08999 * 109.91782 * 266.08677 * 13 5 4 36 36 H 1.09001 * 110.07189 * 144.89299 * 13 5 4 37 37 H 1.00902 * 110.99560 * 322.49990 * 16 14 13 38 38 H 1.08994 * 109.47346 * 60.00149 * 17 16 14 39 39 H 1.09006 * 109.47133 * 299.99542 * 17 16 14 40 40 H 0.97000 * 119.99555 * 359.97438 * 20 18 17 41 41 H 0.96996 * 120.00340 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9170 1.0190 0.0000 4 6 2.0786 -0.7953 1.2114 5 7 3.4278 -1.2099 0.7625 6 6 4.5536 -1.2470 1.5025 7 8 5.5993 -1.6106 1.0004 8 6 4.5169 -0.8462 2.9242 9 6 5.6269 -0.8511 3.7666 10 7 5.3312 -0.4547 4.9698 11 16 3.8110 -0.1126 5.0254 12 7 3.4339 -0.4356 3.5468 13 6 3.2875 -1.5729 -0.6600 14 6 2.0775 -0.7938 -1.2085 15 1 1.3219 -1.4835 -1.5843 16 7 2.5024 0.1255 -2.2727 17 6 2.5252 -0.5522 -3.5758 18 6 2.9653 0.4199 -4.6399 19 8 3.2332 1.5648 -4.3421 20 7 3.0604 0.0174 -5.9227 21 6 3.4602 0.9019 -6.8908 22 1 3.6987 1.9213 -6.6257 23 6 3.5587 0.4868 -8.2132 24 7 3.2690 -0.7538 -8.5357 25 14 4.1029 1.6921 -9.5325 26 1 4.1268 1.0068 -10.8496 27 1 3.1523 2.8319 -9.5840 28 1 5.4627 2.1957 -9.2123 29 1 -0.3633 -1.0260 0.0590 30 1 -0.3634 0.5641 0.8589 31 1 -0.3633 0.4618 -0.9181 32 1 1.4557 -1.6667 1.4133 33 1 2.1454 -0.1591 2.0939 34 1 6.6175 -1.1494 3.4566 35 1 3.1125 -2.6447 -0.7542 36 1 4.1877 -1.2943 -1.2078 37 1 3.4010 0.5328 -2.0611 38 1 1.5270 -0.9214 -3.8109 39 1 3.2226 -1.3891 -3.5379 40 1 2.8458 -0.8981 -6.1608 41 1 2.9868 -1.3798 -7.8506 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717275081.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:30 Heat of formation + Delta-G solvation = 7.880347 kcal Electronic energy + Delta-G solvation = -26479.802380 eV Core-core repulsion = 22522.446839 eV Total energy + Delta-G solvation = -3957.355541 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.59522 -40.00101 -38.53384 -37.89850 -35.01032 -34.26446 -33.80495 -32.64751 -31.08328 -29.31983 -27.84376 -26.54119 -26.15147 -24.20159 -23.30257 -22.11194 -20.60565 -19.98580 -19.87602 -19.56680 -17.91489 -17.53539 -16.81909 -16.46556 -16.31525 -15.91329 -15.48716 -15.13445 -15.03743 -14.50138 -14.11123 -13.87259 -13.75489 -13.67399 -13.15345 -12.98052 -12.64790 -12.55848 -12.39667 -12.24695 -11.77168 -11.72807 -11.65295 -11.56827 -11.23656 -11.21172 -11.09143 -10.93648 -10.67058 -10.37072 -10.20059 -9.86466 -9.68674 -9.54702 -9.12215 -8.52160 -8.15767 -8.03094 -6.75159 -3.88329 -0.05095 0.91398 1.11295 1.15694 2.51582 2.74268 3.31565 3.35580 3.55886 3.83645 3.88532 4.01703 4.16251 4.32135 4.33162 4.54766 4.64964 4.86629 4.96524 4.99133 5.04130 5.11898 5.24806 5.32820 5.40754 5.47345 5.58771 5.61366 5.63348 5.78086 5.83330 5.87123 5.99337 6.00189 6.06740 6.19895 7.03769 7.12886 7.48269 7.67241 7.80681 8.08265 8.59946 8.79737 9.47464 9.87297 10.68284 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.022221 B = 0.002111 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.792476 B =13260.474702 C =13815.084357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.095 4.095 3 H 0.092 0.908 4 C 0.093 3.907 5 N -0.598 5.598 6 C 0.618 3.382 7 O -0.523 6.523 8 C 0.020 3.980 9 C 0.091 3.909 10 N -0.575 5.575 11 S 0.711 5.289 12 N -0.542 5.542 13 C 0.075 3.925 14 C 0.079 3.921 15 H 0.097 0.903 16 N -0.654 5.654 17 C 0.048 3.952 18 C 0.443 3.557 19 O -0.577 6.577 20 N -0.575 5.575 21 C -0.382 4.382 22 H 0.099 0.901 23 C -0.010 4.010 24 N -0.901 5.901 25 Si 1.091 2.909 26 H -0.279 1.279 27 H -0.284 1.284 28 H -0.284 1.284 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.113 0.887 34 H 0.215 0.785 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.353 0.647 38 H 0.088 0.912 39 H 0.045 0.955 40 H 0.376 0.624 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.194 -4.144 27.229 27.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.114 4.114 3 H 0.110 0.890 4 C -0.030 4.030 5 N -0.330 5.330 6 C 0.401 3.599 7 O -0.398 6.398 8 C -0.155 4.155 9 C -0.102 4.102 10 N -0.416 5.416 11 S 0.754 5.246 12 N -0.392 5.392 13 C -0.049 4.049 14 C -0.033 4.033 15 H 0.115 0.885 16 N -0.286 5.286 17 C -0.085 4.085 18 C 0.228 3.772 19 O -0.460 6.460 20 N -0.213 5.213 21 C -0.511 4.511 22 H 0.117 0.883 23 C -0.212 4.212 24 N -0.540 5.540 25 Si 0.917 3.083 26 H -0.204 1.204 27 H -0.210 1.210 28 H -0.210 1.210 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.130 0.870 34 H 0.232 0.768 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.174 0.826 38 H 0.106 0.894 39 H 0.063 0.937 40 H 0.209 0.791 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.811 -2.428 27.072 27.604 hybrid contribution 1.381 -1.992 0.261 2.438 sum -3.430 -4.420 27.333 27.900 Atomic orbital electron populations 1.21672 0.93375 1.01715 1.02634 1.22318 0.96534 1.00194 0.92404 0.88993 1.23168 0.81343 0.99470 0.99056 1.48406 1.08616 1.64373 1.11597 1.16329 0.82826 0.78467 0.82327 1.90871 1.29602 1.48146 1.71165 1.22440 0.88548 1.06113 0.98405 1.23788 1.02402 0.98202 0.85832 1.72273 1.21449 1.21704 1.26164 1.79168 0.95501 1.44152 1.05782 1.72691 1.33218 1.19686 1.13558 1.23108 1.00625 1.00293 0.80869 1.22711 0.95273 0.93273 0.92048 0.88499 1.60212 1.36884 1.31624 0.99906 1.21747 1.01500 0.95436 0.89812 1.19702 0.84986 0.89182 0.83293 1.90535 1.54400 1.19774 1.81293 1.41932 1.60331 1.12598 1.06455 1.20525 1.45699 0.95891 0.88985 0.88343 1.26515 0.96640 0.99939 0.98110 1.70902 1.42909 1.03869 1.36315 0.83133 0.76593 0.73749 0.74806 1.20414 1.20984 1.21019 0.92719 0.92470 0.91325 0.90845 0.86959 0.76835 0.90885 0.89951 0.82619 0.89428 0.93735 0.79139 0.92770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.16 37.15 0.34 -0.80 16 2 C -0.09 -0.93 3.38 -88.75 -0.30 -1.23 16 3 H 0.09 1.07 8.06 -51.93 -0.42 0.65 16 4 C 0.09 0.84 6.11 -2.12 -0.01 0.83 16 5 N -0.60 -6.77 3.29 -170.90 -0.56 -7.34 16 6 C 0.62 7.71 7.89 -12.37 -0.10 7.61 16 7 O -0.52 -7.99 17.15 5.31 0.09 -7.90 16 8 C 0.02 0.20 6.73 -83.71 -0.56 -0.36 16 9 C 0.09 0.81 11.22 -17.87 -0.20 0.61 16 10 N -0.58 -4.90 11.41 19.42 0.22 -4.68 16 11 S 0.71 4.42 23.69 -107.50 -2.55 1.87 16 12 N -0.54 -4.63 8.19 23.17 0.19 -4.44 16 13 C 0.08 0.87 6.54 -2.98 -0.02 0.85 16 14 C 0.08 0.89 2.88 -66.34 -0.19 0.70 16 15 H 0.10 0.98 7.57 -51.93 -0.39 0.59 16 16 N -0.65 -10.03 5.85 -106.54 -0.62 -10.65 16 17 C 0.05 0.80 6.00 -4.98 -0.03 0.77 16 18 C 0.44 10.38 7.82 -10.98 -0.09 10.29 16 19 O -0.58 -15.77 15.78 5.55 0.09 -15.68 16 20 N -0.58 -14.45 5.28 -10.97 -0.06 -14.51 16 21 C -0.38 -10.78 9.68 -14.93 -0.14 -10.92 16 22 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 23 C -0.01 -0.26 5.50 -17.47 -0.10 -0.36 16 24 N -0.90 -25.28 13.68 55.50 0.76 -24.52 16 25 Si 1.09 24.41 29.92 -169.99 -5.09 19.33 16 26 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 27 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 28 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 29 H 0.05 0.39 8.10 -51.93 -0.42 -0.03 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.58 8.02 -51.93 -0.42 0.16 16 33 H 0.11 1.00 5.33 -51.93 -0.28 0.72 16 34 H 0.22 1.58 8.06 -52.49 -0.42 1.15 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.08 1.11 7.54 -51.93 -0.39 0.72 16 37 H 0.35 5.94 7.93 -39.29 -0.31 5.62 16 38 H 0.09 1.32 8.07 -51.93 -0.42 0.90 16 39 H 0.04 0.67 8.11 -51.93 -0.42 0.25 16 40 H 0.38 8.67 6.73 -40.82 -0.27 8.40 16 41 H 0.26 7.02 6.78 -40.82 -0.28 6.75 16 LS Contribution 360.34 15.07 5.43 5.43 Total: -1.00 -34.92 360.34 -8.38 -43.30 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -4.88 Total: 11.80 kcal Atomic # 6 Polarization: 9.39 SS G_CDS: -1.40 Total: 7.99 kcal Atomic # 7 Polarization: -66.07 SS G_CDS: -0.07 Total: -66.14 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: 0.18 Total: -23.58 kcal Atomic # 14 Polarization: 24.41 SS G_CDS: -5.09 Total: 19.33 kcal Atomic # 16 Polarization: 4.42 SS G_CDS: -2.55 Total: 1.87 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.92 -8.38 -43.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717275081.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.183 kcal (2) G-P(sol) polarization free energy of solvation -34.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds