Wall clock time and date at job start Tue Mar 31 2020 23:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 110.79875 * 2 1 4 4 C 1.54950 * 110.73615 * 123.28388 * 2 1 3 5 5 N 1.48118 * 103.25309 * 155.71540 * 4 2 1 6 6 C 1.34777 * 127.02956 * 140.67459 * 5 4 2 7 7 O 1.21566 * 119.99756 * 180.02562 * 6 5 4 8 8 C 1.47748 * 120.00321 * 0.04344 * 6 5 4 9 9 C 1.39354 * 124.11597 * 180.02562 * 8 6 5 10 10 N 1.30095 * 112.14368 * 179.97438 * 9 8 6 11 11 S 1.55919 * 108.75386 * 359.97438 * 10 9 8 12 12 N 1.31492 * 124.11365 * 359.69687 * 8 6 5 13 13 C 1.47481 * 105.93497 * 320.70798 * 5 4 2 14 14 C 1.54008 * 107.08351 * 25.44836 * 13 5 4 15 15 H 1.08993 * 110.32453 * 239.69967 * 14 13 5 16 16 N 1.46903 * 110.32675 * 117.58538 * 14 13 5 17 17 C 1.46896 * 110.99955 * 86.45553 * 16 14 13 18 18 C 1.50701 * 109.46946 * 180.02562 * 17 16 14 19 19 O 1.21293 * 120.00278 * 359.97438 * 18 17 16 20 20 N 1.34777 * 120.00078 * 180.02562 * 18 17 16 21 21 C 1.37095 * 119.99959 * 179.97438 * 20 18 17 22 22 H 1.07991 * 120.00408 * 359.97438 * 21 20 18 23 23 C 1.38950 * 119.99816 * 179.97438 * 21 20 18 24 24 N 1.31414 * 119.99922 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00126 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47228 * 179.97438 * 25 23 21 27 27 H 1.48501 * 109.46793 * 299.99915 * 25 23 21 28 28 H 1.48500 * 109.47000 * 60.00007 * 25 23 21 29 29 H 1.08999 * 109.47125 * 183.29153 * 1 2 3 30 30 H 1.09000 * 109.47762 * 303.29604 * 1 2 3 31 31 H 1.09006 * 109.46715 * 63.29651 * 1 2 3 32 32 H 1.09001 * 110.65950 * 37.27368 * 4 2 1 33 33 H 1.08995 * 110.80445 * 274.22736 * 4 2 1 34 34 H 1.07994 * 123.92801 * 359.97438 * 9 8 6 35 35 H 1.08999 * 109.91782 * 266.08677 * 13 5 4 36 36 H 1.09001 * 110.07189 * 144.89299 * 13 5 4 37 37 H 1.00902 * 110.99560 * 322.49990 * 16 14 13 38 38 H 1.08994 * 109.47346 * 60.00149 * 17 16 14 39 39 H 1.09006 * 109.47133 * 299.99542 * 17 16 14 40 40 H 0.97000 * 119.99555 * 359.97438 * 20 18 17 41 41 H 0.96996 * 120.00340 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9170 1.0190 0.0000 4 6 2.0786 -0.7953 1.2114 5 7 3.4278 -1.2099 0.7625 6 6 4.5536 -1.2470 1.5025 7 8 5.5993 -1.6106 1.0004 8 6 4.5169 -0.8462 2.9242 9 6 5.6269 -0.8511 3.7666 10 7 5.3312 -0.4547 4.9698 11 16 3.8110 -0.1126 5.0254 12 7 3.4339 -0.4356 3.5468 13 6 3.2875 -1.5729 -0.6600 14 6 2.0775 -0.7938 -1.2085 15 1 1.3219 -1.4835 -1.5843 16 7 2.5024 0.1255 -2.2727 17 6 2.5252 -0.5522 -3.5758 18 6 2.9653 0.4199 -4.6399 19 8 3.2332 1.5648 -4.3421 20 7 3.0604 0.0174 -5.9227 21 6 3.4602 0.9019 -6.8908 22 1 3.6987 1.9213 -6.6257 23 6 3.5587 0.4868 -8.2132 24 7 3.2690 -0.7538 -8.5357 25 14 4.1029 1.6921 -9.5325 26 1 4.1268 1.0068 -10.8496 27 1 3.1523 2.8319 -9.5840 28 1 5.4627 2.1957 -9.2123 29 1 -0.3633 -1.0260 0.0590 30 1 -0.3634 0.5641 0.8589 31 1 -0.3633 0.4618 -0.9181 32 1 1.4557 -1.6667 1.4133 33 1 2.1454 -0.1591 2.0939 34 1 6.6175 -1.1494 3.4566 35 1 3.1125 -2.6447 -0.7542 36 1 4.1877 -1.2943 -1.2078 37 1 3.4010 0.5328 -2.0611 38 1 1.5270 -0.9214 -3.8109 39 1 3.2226 -1.3891 -3.5379 40 1 2.8458 -0.8981 -6.1608 41 1 2.9868 -1.3798 -7.8506 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717275081.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:30 Heat of formation + Delta-G solvation = -19.937592 kcal Electronic energy + Delta-G solvation = -26481.008656 eV Core-core repulsion = 22522.446839 eV Total energy + Delta-G solvation = -3958.561817 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.31946 -40.91096 -40.21451 -39.03097 -36.55908 -35.77704 -34.67537 -33.51771 -33.10801 -30.36289 -28.74850 -27.55534 -27.24816 -25.88338 -24.29269 -22.96971 -21.71074 -21.18139 -20.81933 -20.45711 -19.97918 -18.51089 -17.98762 -17.62805 -17.21573 -16.97876 -16.64593 -16.38903 -16.18526 -15.75314 -15.63036 -15.39091 -15.01082 -14.74221 -14.29685 -13.87526 -13.81085 -13.53685 -13.34653 -13.30745 -13.14766 -12.94962 -12.75355 -12.46028 -12.32792 -12.30111 -12.05623 -11.92425 -11.92259 -11.87604 -11.53241 -11.51083 -11.20542 -10.42852 -10.33246 -10.11794 -9.98970 -9.35479 -8.93101 -6.07056 -0.72251 0.28608 0.37662 0.58528 1.52001 1.54109 1.69536 1.82276 1.87965 2.00140 2.39669 2.76624 3.15640 3.16141 3.33924 3.43909 3.51361 3.69267 3.96063 4.02440 4.06834 4.14922 4.30625 4.35875 4.42402 4.47536 4.51343 4.63586 4.71791 4.75951 4.92316 5.04468 5.13634 5.28928 5.33338 5.45990 5.59375 5.92642 5.98314 6.17131 6.26519 6.57395 6.73995 6.76749 7.43656 7.92047 8.54758 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.022221 B = 0.002111 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.792476 B =13260.474702 C =13815.084357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.090 4.090 3 H 0.070 0.930 4 C 0.100 3.900 5 N -0.600 5.600 6 C 0.612 3.388 7 O -0.564 6.564 8 C -0.001 4.001 9 C 0.088 3.912 10 N -0.599 5.599 11 S 0.801 5.199 12 N -0.553 5.553 13 C 0.077 3.923 14 C 0.083 3.917 15 H 0.119 0.881 16 N -0.666 5.666 17 C 0.063 3.937 18 C 0.440 3.560 19 O -0.620 6.620 20 N -0.586 5.586 21 C -0.410 4.410 22 H 0.072 0.928 23 C -0.042 4.042 24 N -0.916 5.916 25 Si 1.133 2.867 26 H -0.272 1.272 27 H -0.272 1.272 28 H -0.274 1.274 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.095 0.905 33 H 0.117 0.883 34 H 0.219 0.781 35 H 0.090 0.910 36 H 0.056 0.944 37 H 0.341 0.659 38 H 0.115 0.885 39 H 0.067 0.933 40 H 0.385 0.615 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.771 -4.795 28.981 29.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.110 4.110 3 H 0.088 0.912 4 C -0.023 4.023 5 N -0.332 5.332 6 C 0.397 3.603 7 O -0.442 6.442 8 C -0.174 4.174 9 C -0.104 4.104 10 N -0.441 5.441 11 S 0.843 5.157 12 N -0.405 5.405 13 C -0.048 4.048 14 C -0.028 4.028 15 H 0.137 0.863 16 N -0.297 5.297 17 C -0.069 4.069 18 C 0.228 3.772 19 O -0.505 6.505 20 N -0.225 5.225 21 C -0.539 4.539 22 H 0.090 0.910 23 C -0.241 4.241 24 N -0.555 5.555 25 Si 0.953 3.047 26 H -0.196 1.196 27 H -0.198 1.198 28 H -0.200 1.200 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.114 0.886 33 H 0.135 0.865 34 H 0.236 0.764 35 H 0.108 0.892 36 H 0.075 0.925 37 H 0.160 0.840 38 H 0.133 0.867 39 H 0.085 0.915 40 H 0.220 0.780 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.418 -3.118 28.839 29.708 hybrid contribution 1.790 -1.732 -0.062 2.491 sum -4.629 -4.850 28.777 29.547 Atomic orbital electron populations 1.21636 0.91721 1.03045 1.02420 1.22273 0.97739 0.98907 0.92078 0.91176 1.23267 0.80234 1.00211 0.98579 1.48529 1.09288 1.63869 1.11473 1.16675 0.82450 0.77885 0.83327 1.90835 1.30962 1.50117 1.72321 1.22034 0.89431 1.08389 0.97500 1.23782 1.02551 0.98203 0.85818 1.72155 1.23380 1.22452 1.26126 1.78839 0.93326 1.40453 1.03081 1.72444 1.33288 1.19700 1.15089 1.23053 0.99517 1.01205 0.81028 1.22835 0.95458 0.93160 0.91338 0.86298 1.60252 1.36195 1.32950 1.00330 1.21636 1.03121 0.93861 0.88291 1.20913 0.82771 0.89665 0.83830 1.90505 1.55721 1.22226 1.82091 1.41987 1.60978 1.12727 1.06842 1.20499 1.47436 0.95592 0.90419 0.91041 1.27812 0.95773 1.00780 0.99697 1.70969 1.43729 1.04321 1.36497 0.82641 0.76939 0.72393 0.72772 1.19646 1.19759 1.19986 0.90780 0.91113 0.92956 0.88650 0.86541 0.76431 0.89221 0.92507 0.84031 0.86743 0.91520 0.78037 0.92927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.83 9.16 71.98 0.66 -1.17 16 2 C -0.09 -1.63 3.38 -9.58 -0.03 -1.66 16 3 H 0.07 1.60 8.06 -2.39 -0.02 1.58 16 4 C 0.10 1.59 6.11 86.74 0.53 2.12 16 5 N -0.60 -13.15 3.29 -812.89 -2.67 -15.83 16 6 C 0.61 15.38 7.89 86.76 0.68 16.07 16 7 O -0.56 -17.93 17.15 -3.92 -0.07 -18.00 16 8 C 0.00 -0.03 6.73 41.98 0.28 0.25 16 9 C 0.09 1.52 11.22 85.22 0.96 2.47 16 10 N -0.60 -9.27 11.41 -92.46 -1.05 -10.32 16 11 S 0.80 7.93 23.69 -56.49 -1.34 6.59 16 12 N -0.55 -8.38 8.19 -80.60 -0.66 -9.04 16 13 C 0.08 1.69 6.54 86.53 0.57 2.26 16 14 C 0.08 1.73 2.88 45.81 0.13 1.86 16 15 H 0.12 2.00 7.57 -2.39 -0.02 1.99 16 16 N -0.67 -20.10 5.85 -490.99 -2.87 -22.97 16 17 C 0.06 2.05 6.00 85.56 0.51 2.56 16 18 C 0.44 20.89 7.82 87.66 0.69 21.58 16 19 O -0.62 -34.88 15.78 -3.07 -0.05 -34.93 16 20 N -0.59 -29.87 5.28 -306.99 -1.62 -31.50 16 21 C -0.41 -23.68 9.68 84.04 0.81 -22.87 16 22 H 0.07 4.45 7.16 -2.91 -0.02 4.43 16 23 C -0.04 -2.32 5.50 84.93 0.47 -1.85 16 24 N -0.92 -51.31 13.68 21.66 0.30 -51.02 16 25 Si 1.13 49.04 29.92 68.60 2.05 51.09 16 26 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 27 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 28 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 29 H 0.07 0.77 8.10 -2.39 -0.02 0.75 16 30 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.05 0.92 8.14 -2.38 -0.02 0.91 16 32 H 0.10 1.16 8.02 -2.39 -0.02 1.14 16 33 H 0.12 1.81 5.33 -2.39 -0.01 1.80 16 34 H 0.22 3.31 8.06 -2.91 -0.02 3.29 16 35 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.06 1.57 7.54 -2.39 -0.02 1.55 16 37 H 0.34 11.75 7.93 -89.69 -0.71 11.03 16 38 H 0.11 3.16 8.07 -2.39 -0.02 3.14 16 39 H 0.07 1.91 8.11 -2.38 -0.02 1.89 16 40 H 0.39 17.88 6.73 -92.71 -0.62 17.26 16 41 H 0.26 14.02 6.78 -92.71 -0.63 13.39 16 Total: -1.00 -77.72 360.34 -1.82 -79.54 By element: Atomic # 1 Polarization: 34.85 SS G_CDS: -0.09 Total: 34.76 kcal Atomic # 6 Polarization: 15.37 SS G_CDS: 6.26 Total: 21.63 kcal Atomic # 7 Polarization: -132.09 SS G_CDS: -8.59 Total: -140.68 kcal Atomic # 8 Polarization: -52.82 SS G_CDS: -0.12 Total: -52.93 kcal Atomic # 14 Polarization: 49.04 SS G_CDS: 2.05 Total: 51.09 kcal Atomic # 16 Polarization: 7.93 SS G_CDS: -1.34 Total: 6.59 kcal Total: -77.72 -1.82 -79.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717275081.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.603 kcal (2) G-P(sol) polarization free energy of solvation -77.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds