Wall clock time and date at job start Tue Mar 31 2020 22:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86802 * 119.99787 * 2 1 4 4 H 1.48501 * 109.46827 * 269.99882 * 3 2 1 5 5 H 1.48496 * 109.47295 * 30.00002 * 3 2 1 6 6 H 1.48500 * 109.47075 * 150.00286 * 3 2 1 7 7 C 1.38801 * 120.00184 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99773 * 179.97438 * 7 2 1 9 9 S 1.76203 * 119.99656 * 359.97438 * 7 2 1 10 10 C 1.81004 * 99.99767 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.46900 * 180.02562 * 10 9 7 12 12 O 1.21276 * 120.00166 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99585 * 179.97438 * 11 10 9 14 14 C 1.46926 * 120.62730 * 180.02562 * 13 11 10 15 15 C 1.53191 * 108.89109 * 126.46248 * 14 13 11 16 16 C 1.53044 * 109.31440 * 54.56430 * 15 14 13 17 17 N 1.46500 * 109.45811 * 178.61157 * 16 15 14 18 18 C 1.34780 * 119.99466 * 204.99547 * 17 16 15 19 19 O 1.21548 * 120.00158 * 0.02562 * 18 17 16 20 20 C 1.47875 * 119.99195 * 180.02562 * 18 17 16 21 21 N 1.34549 * 126.04165 * 180.02562 * 20 18 17 22 22 C 1.30866 * 107.26906 * 179.97438 * 21 20 18 23 23 N 1.34583 * 107.62777 * 0.02562 * 22 21 20 24 24 H 0.97000 * 125.75288 * 179.97438 * 23 22 21 25 25 N 1.28855 * 108.49755 * 359.72716 * 23 22 21 26 26 C 1.53040 * 109.53662 * 298.63203 * 16 15 14 27 27 C 1.46957 * 120.65462 * 359.81587 * 13 11 10 28 28 H 0.96997 * 120.00099 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47002 * 59.99921 * 10 9 7 30 30 H 1.08999 * 109.46823 * 300.00269 * 10 9 7 31 31 H 1.09002 * 109.58861 * 6.60251 * 14 13 11 32 32 H 1.08996 * 109.58519 * 246.32142 * 14 13 11 33 33 H 1.09003 * 109.49294 * 174.51508 * 15 14 13 34 34 H 1.08997 * 109.50161 * 294.61021 * 15 14 13 35 35 H 1.08996 * 109.46025 * 58.63894 * 16 15 14 36 36 H 0.97002 * 120.00186 * 25.00324 * 17 16 15 37 37 H 1.08007 * 126.19064 * 179.97438 * 22 21 20 38 38 H 1.08995 * 109.49643 * 181.31582 * 26 16 15 39 39 H 1.08994 * 109.49843 * 301.38341 * 26 16 15 40 40 H 1.09001 * 109.46843 * 113.75468 * 27 13 11 41 41 H 1.09002 * 109.71597 * 353.46502 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1293 -2.7280 0.0019 10 6 2.5159 -3.8914 0.0029 11 6 1.9874 -5.3027 0.0036 12 8 0.7911 -5.5023 0.0038 13 7 2.8442 -6.3431 0.0039 14 6 2.3441 -7.7246 0.0039 15 6 2.9855 -8.4843 -1.1615 16 6 4.5084 -8.3673 -1.0651 17 7 5.1260 -9.1204 -2.1594 18 6 6.3820 -9.5915 -2.0284 19 8 7.0019 -9.3920 -1.0021 20 6 7.0055 -10.3512 -3.1333 21 7 8.2449 -10.8749 -3.1333 22 6 8.4166 -11.4666 -4.2878 23 7 7.2854 -11.3080 -4.9993 24 1 7.1277 -11.6439 -5.8956 25 7 6.4450 -10.6392 -4.2874 26 6 4.9159 -6.8955 -1.1653 27 6 4.2964 -6.1178 -0.0005 28 1 -0.4850 0.8400 0.0004 29 1 3.1245 -3.7305 0.8928 30 1 3.1245 -3.7321 -0.8872 31 1 1.2605 -7.7211 -0.1144 32 1 2.6073 -8.2085 0.9445 33 1 2.6975 -9.5345 -1.1135 34 1 2.6468 -8.0565 -2.1051 35 1 4.8440 -8.7726 -0.1106 36 1 4.6311 -9.2799 -2.9783 37 1 9.3058 -11.9874 -4.6115 38 1 6.0020 -6.8149 -1.1201 39 1 4.5595 -6.4828 -2.1090 40 1 4.7213 -6.4689 0.9399 41 1 4.5031 -5.0543 -0.1204 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001720393054.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:45 Heat of formation + Delta-G solvation = 20.560366 kcal Electronic energy + Delta-G solvation = -25978.313887 eV Core-core repulsion = 22021.508193 eV Total energy + Delta-G solvation = -3956.805694 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.99511 -40.40686 -39.39656 -37.26026 -34.82252 -33.93121 -32.49512 -32.41443 -31.70782 -30.92009 -28.90764 -25.94879 -25.45125 -24.07798 -23.45774 -23.30284 -21.18834 -20.81073 -19.54085 -19.05416 -17.82888 -17.61261 -16.95734 -16.86648 -16.16695 -15.62674 -15.39970 -15.29521 -15.02642 -14.79096 -14.43925 -14.24541 -13.97467 -13.83663 -13.25967 -12.94447 -12.76208 -12.68001 -12.36809 -12.15037 -11.81876 -11.44013 -11.30670 -11.22924 -11.05129 -11.04726 -11.00483 -10.84641 -10.73861 -10.54083 -10.28972 -9.79454 -9.46848 -9.31085 -9.05400 -8.55661 -8.21207 -6.48749 -6.20383 -3.90829 0.83014 1.62456 2.04380 2.49757 2.93370 2.96988 3.06947 3.23474 3.27250 3.31611 3.60701 3.75026 3.93733 4.21481 4.31243 4.44906 4.56013 4.79942 4.90096 4.97651 5.13096 5.14794 5.24682 5.34665 5.40774 5.52722 5.58012 5.62667 5.68812 5.72282 5.81364 5.88931 5.90962 5.99595 6.09354 6.13850 6.16037 6.63431 6.99801 7.45504 7.54979 7.61204 7.79140 8.36614 8.56310 9.25003 10.86998 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.019590 B = 0.002030 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.927386 B =13789.397096 C =14545.407995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.534 4.534 8 H 0.073 0.927 9 S -0.062 6.062 10 C -0.151 4.151 11 C 0.537 3.463 12 O -0.517 6.517 13 N -0.622 5.622 14 C 0.118 3.882 15 C -0.141 4.141 16 C 0.148 3.852 17 N -0.709 5.709 18 C 0.614 3.386 19 O -0.506 6.506 20 C 0.152 3.848 21 N -0.462 5.462 22 C 0.198 3.802 23 N -0.398 5.398 24 H 0.453 0.547 25 N -0.276 5.276 26 C -0.146 4.146 27 C 0.112 3.888 28 H 0.268 0.732 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.407 0.593 37 H 0.232 0.768 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.680 -25.852 -10.793 32.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.165 5.835 10 C -0.302 4.302 11 C 0.325 3.675 12 O -0.391 6.391 13 N -0.358 5.358 14 C -0.006 4.006 15 C -0.180 4.180 16 C 0.044 3.956 17 N -0.361 5.361 18 C 0.395 3.605 19 O -0.377 6.377 20 C -0.129 4.129 21 N -0.186 5.186 22 C -0.100 4.100 23 N -0.121 5.121 24 H 0.300 0.700 25 N -0.118 5.118 26 C -0.186 4.186 27 C -0.012 4.012 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.118 0.882 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.113 0.887 36 H 0.243 0.757 37 H 0.248 0.752 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 13.799 -25.594 -9.717 30.658 hybrid contribution 2.089 0.728 -1.355 2.594 sum 15.888 -24.867 -11.072 31.518 Atomic orbital electron populations 1.70017 1.05939 1.27426 1.46904 1.24992 0.95030 0.99019 0.94563 0.86172 0.79443 0.81589 0.78329 1.20299 1.20764 1.19669 1.22861 0.94898 0.91627 1.58881 0.90929 1.85389 1.05035 0.96364 1.96701 1.23563 1.06468 0.95385 1.04772 1.20328 0.86166 0.86207 0.74827 1.90687 1.15182 1.85230 1.48036 1.48157 1.06397 1.05723 1.75565 1.21429 1.00897 0.81170 0.97099 1.22223 0.93413 1.01535 1.00786 1.21082 0.92536 0.91324 0.90657 1.45855 1.14336 1.55576 1.20315 1.16289 0.81545 0.78335 0.84282 1.90856 1.62145 1.56908 1.27757 1.23899 0.91029 1.04341 0.93647 1.71332 1.15647 1.12313 1.19280 1.26794 0.93883 1.01101 0.88238 1.45146 1.10722 1.38976 1.17245 0.70049 1.74254 1.19672 1.12490 1.05356 1.22340 1.01766 0.94554 0.99924 1.21668 0.79744 1.01668 0.98128 0.92206 0.89172 0.89252 0.88231 0.91404 0.89980 0.90534 0.88667 0.75732 0.75181 0.89976 0.90836 0.91013 0.88730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.20 13.22 55.49 0.73 -25.47 16 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.49 29.55 -169.99 -5.02 16.47 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.53 -15.24 9.50 30.94 0.29 -14.95 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 10 C -0.15 -3.07 4.51 36.01 0.16 -2.91 16 11 C 0.54 10.10 7.72 -10.98 -0.08 10.01 16 12 O -0.52 -11.66 15.27 5.56 0.08 -11.57 16 13 N -0.62 -8.61 2.98 -172.77 -0.51 -9.13 16 14 C 0.12 1.33 6.43 -3.71 -0.02 1.31 16 15 C -0.14 -1.22 5.55 -26.61 -0.15 -1.37 16 16 C 0.15 1.37 2.42 -67.89 -0.16 1.21 16 17 N -0.71 -6.29 5.07 -54.70 -0.28 -6.57 16 18 C 0.61 7.06 7.80 -12.31 -0.10 6.96 16 19 O -0.51 -7.52 16.75 5.32 0.09 -7.43 16 20 C 0.15 1.55 7.96 -156.36 -1.24 0.31 16 21 N -0.46 -4.57 11.41 -12.36 -0.14 -4.71 16 22 C 0.20 0.85 13.14 -90.49 -1.19 -0.34 16 23 N -0.40 -1.40 6.93 29.56 0.20 -1.19 16 24 H 0.45 -0.41 8.96 -190.21 -1.70 -2.12 16 25 N -0.28 -2.06 11.98 32.07 0.38 -1.67 16 26 C -0.15 -1.48 5.65 -26.63 -0.15 -1.63 16 27 C 0.11 1.26 6.33 -3.71 -0.02 1.24 16 28 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.09 1.71 7.95 -51.91 -0.41 1.29 16 30 H 0.09 1.68 7.69 -51.92 -0.40 1.28 16 31 H 0.10 1.29 7.01 -51.93 -0.36 0.93 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.10 0.97 7.58 -51.93 -0.39 0.58 16 36 H 0.41 2.92 8.30 -40.82 -0.34 2.58 16 37 H 0.23 -0.24 8.06 -52.48 -0.42 -0.66 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.09 1.09 5.95 -51.93 -0.31 0.78 16 LS Contribution 364.02 15.07 5.49 5.49 Total: -1.00 -40.16 364.02 -10.38 -50.54 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -6.43 Total: -2.69 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: -2.76 Total: 1.83 kcal Atomic # 7 Polarization: -49.13 SS G_CDS: 0.39 Total: -48.74 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: 0.17 Total: -19.01 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -40.16 -10.38 -50.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720393054.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.096 kcal (2) G-P(sol) polarization free energy of solvation -40.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds