Wall clock time and date at job start Tue Mar 31 2020 22:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86802 * 119.99787 * 2 1 4 4 H 1.48501 * 109.46827 * 269.99882 * 3 2 1 5 5 H 1.48496 * 109.47295 * 30.00002 * 3 2 1 6 6 H 1.48500 * 109.47075 * 150.00286 * 3 2 1 7 7 C 1.38801 * 120.00184 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99773 * 179.97438 * 7 2 1 9 9 S 1.76203 * 119.99656 * 359.97438 * 7 2 1 10 10 C 1.81004 * 99.99767 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.46900 * 180.02562 * 10 9 7 12 12 O 1.21276 * 120.00166 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99585 * 179.97438 * 11 10 9 14 14 C 1.46926 * 120.62730 * 180.02562 * 13 11 10 15 15 C 1.53191 * 108.89109 * 126.46248 * 14 13 11 16 16 C 1.53044 * 109.31440 * 54.56430 * 15 14 13 17 17 N 1.46500 * 109.45811 * 178.61157 * 16 15 14 18 18 C 1.34780 * 119.99466 * 204.99547 * 17 16 15 19 19 O 1.21548 * 120.00158 * 0.02562 * 18 17 16 20 20 C 1.47875 * 119.99195 * 180.02562 * 18 17 16 21 21 N 1.34549 * 126.04165 * 180.02562 * 20 18 17 22 22 C 1.30866 * 107.26906 * 179.97438 * 21 20 18 23 23 N 1.34583 * 107.62777 * 0.02562 * 22 21 20 24 24 H 0.97000 * 125.75288 * 179.97438 * 23 22 21 25 25 N 1.28855 * 108.49755 * 359.72716 * 23 22 21 26 26 C 1.53040 * 109.53662 * 298.63203 * 16 15 14 27 27 C 1.46957 * 120.65462 * 359.81587 * 13 11 10 28 28 H 0.96997 * 120.00099 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47002 * 59.99921 * 10 9 7 30 30 H 1.08999 * 109.46823 * 300.00269 * 10 9 7 31 31 H 1.09002 * 109.58861 * 6.60251 * 14 13 11 32 32 H 1.08996 * 109.58519 * 246.32142 * 14 13 11 33 33 H 1.09003 * 109.49294 * 174.51508 * 15 14 13 34 34 H 1.08997 * 109.50161 * 294.61021 * 15 14 13 35 35 H 1.08996 * 109.46025 * 58.63894 * 16 15 14 36 36 H 0.97002 * 120.00186 * 25.00324 * 17 16 15 37 37 H 1.08007 * 126.19064 * 179.97438 * 22 21 20 38 38 H 1.08995 * 109.49643 * 181.31582 * 26 16 15 39 39 H 1.08994 * 109.49843 * 301.38341 * 26 16 15 40 40 H 1.09001 * 109.46843 * 113.75468 * 27 13 11 41 41 H 1.09002 * 109.71597 * 353.46502 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1293 -2.7280 0.0019 10 6 2.5159 -3.8914 0.0029 11 6 1.9874 -5.3027 0.0036 12 8 0.7911 -5.5023 0.0038 13 7 2.8442 -6.3431 0.0039 14 6 2.3441 -7.7246 0.0039 15 6 2.9855 -8.4843 -1.1615 16 6 4.5084 -8.3673 -1.0651 17 7 5.1260 -9.1204 -2.1594 18 6 6.3820 -9.5915 -2.0284 19 8 7.0019 -9.3920 -1.0021 20 6 7.0055 -10.3512 -3.1333 21 7 8.2449 -10.8749 -3.1333 22 6 8.4166 -11.4666 -4.2878 23 7 7.2854 -11.3080 -4.9993 24 1 7.1277 -11.6439 -5.8956 25 7 6.4450 -10.6392 -4.2874 26 6 4.9159 -6.8955 -1.1653 27 6 4.2964 -6.1178 -0.0005 28 1 -0.4850 0.8400 0.0004 29 1 3.1245 -3.7305 0.8928 30 1 3.1245 -3.7321 -0.8872 31 1 1.2605 -7.7211 -0.1144 32 1 2.6073 -8.2085 0.9445 33 1 2.6975 -9.5345 -1.1135 34 1 2.6468 -8.0565 -2.1051 35 1 4.8440 -8.7726 -0.1106 36 1 4.6311 -9.2799 -2.9783 37 1 9.3058 -11.9874 -4.6115 38 1 6.0020 -6.8149 -1.1201 39 1 4.5595 -6.4828 -2.1090 40 1 4.7213 -6.4689 0.9399 41 1 4.5031 -5.0543 -0.1204 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001720393054.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:44 Heat of formation + Delta-G solvation = -9.911765 kcal Electronic energy + Delta-G solvation = -25979.635257 eV Core-core repulsion = 22021.508193 eV Total energy + Delta-G solvation = -3958.127064 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.47014 -41.42331 -40.51257 -38.40853 -35.83720 -34.57991 -34.45090 -33.32416 -32.57582 -31.75987 -30.33321 -27.68624 -26.73801 -24.87718 -24.35800 -23.80391 -22.15785 -21.56026 -20.50829 -19.84535 -19.50974 -18.45506 -18.20014 -17.41705 -17.13291 -16.94339 -16.86308 -16.65128 -15.91172 -15.83041 -15.74035 -15.23498 -15.14870 -14.94529 -14.49957 -14.38596 -14.19454 -13.44982 -13.36231 -13.24272 -13.15572 -13.03664 -12.88963 -12.60931 -12.29585 -12.12574 -11.79793 -11.75839 -11.70091 -11.59018 -11.38419 -11.13880 -10.88981 -10.79342 -10.28562 -10.18992 -9.74056 -8.66171 -8.34153 -6.12054 0.24080 1.14905 1.26120 1.42498 1.45946 1.52825 1.56778 1.64122 2.00294 2.09859 2.23054 2.27858 2.99818 3.16447 3.25203 3.50280 3.58192 3.72628 3.79359 4.00907 4.04333 4.07119 4.26050 4.28809 4.38043 4.44882 4.54023 4.69749 4.80049 4.83540 4.88201 4.92675 5.02779 5.16204 5.24820 5.33304 5.42465 5.55645 5.92810 6.20245 6.25230 6.31418 6.92056 7.07134 7.07754 7.13906 8.74980 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.019590 B = 0.002030 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.927386 B =13789.397096 C =14545.407995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.013 3.987 3 Si 0.998 3.002 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.259 1.259 7 C -0.546 4.546 8 H 0.082 0.918 9 S -0.149 6.149 10 C -0.126 4.126 11 C 0.536 3.464 12 O -0.563 6.563 13 N -0.607 5.607 14 C 0.112 3.888 15 C -0.127 4.127 16 C 0.151 3.849 17 N -0.694 5.694 18 C 0.613 3.387 19 O -0.550 6.550 20 C 0.121 3.879 21 N -0.516 5.516 22 C 0.219 3.781 23 N -0.379 5.379 24 H 0.473 0.527 25 N -0.276 5.276 26 C -0.139 4.139 27 C 0.107 3.893 28 H 0.271 0.729 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.417 0.583 37 H 0.282 0.718 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.090 0.910 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.197 -27.132 -12.211 34.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.192 4.192 3 Si 0.819 3.181 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.183 1.183 7 C -0.693 4.693 8 H 0.100 0.900 9 S 0.078 5.922 10 C -0.277 4.277 11 C 0.324 3.676 12 O -0.442 6.442 13 N -0.341 5.341 14 C -0.010 4.010 15 C -0.166 4.166 16 C 0.047 3.953 17 N -0.346 5.346 18 C 0.395 3.605 19 O -0.424 6.424 20 C -0.159 4.159 21 N -0.241 5.241 22 C -0.078 4.078 23 N -0.104 5.104 24 H 0.325 0.675 25 N -0.119 5.119 26 C -0.178 4.178 27 C -0.015 4.015 28 H 0.080 0.920 29 H 0.124 0.876 30 H 0.125 0.875 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.125 0.875 34 H 0.093 0.907 35 H 0.109 0.891 36 H 0.254 0.746 37 H 0.297 0.703 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.108 0.892 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 16.336 -26.932 -11.194 33.429 hybrid contribution 1.401 0.920 -1.007 1.955 sum 17.737 -26.012 -12.201 33.765 Atomic orbital electron populations 1.70180 1.07917 1.28583 1.47999 1.26120 0.95981 1.03273 0.93780 0.84965 0.78205 0.76085 0.78800 1.19279 1.20279 1.18271 1.23191 0.95310 0.92005 1.58832 0.90003 1.85542 1.10499 0.99153 1.97015 1.23395 1.03448 0.94600 1.06306 1.20057 0.85949 0.86551 0.75057 1.90672 1.17064 1.85729 1.50710 1.48129 1.06994 1.05720 1.73297 1.21656 1.00192 0.79817 0.99365 1.22109 0.92536 1.02516 0.99403 1.21005 0.92774 0.90768 0.90719 1.45711 1.13719 1.54688 1.20479 1.16552 0.81735 0.78001 0.84188 1.90816 1.63268 1.58808 1.29525 1.23638 0.91836 1.06134 0.94278 1.71264 1.16137 1.14376 1.22340 1.27658 0.94755 0.98942 0.86451 1.45185 1.10015 1.37498 1.17750 0.67544 1.74161 1.20405 1.12625 1.04736 1.22248 1.01444 0.94909 0.99199 1.21882 0.77945 1.02054 0.99656 0.91998 0.87556 0.87532 0.89932 0.89338 0.87506 0.90662 0.89112 0.74582 0.70258 0.90149 0.90994 0.89174 0.88848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.17 13.22 21.65 0.29 -55.88 16 2 C 0.01 0.76 5.49 84.86 0.47 1.22 16 3 Si 1.00 43.93 29.55 68.60 2.03 45.95 16 4 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 5 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 6 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 7 C -0.55 -31.38 9.50 67.95 0.65 -30.73 16 8 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 9 S -0.15 -8.37 20.57 -56.49 -1.16 -9.53 16 10 C -0.13 -5.12 4.51 71.24 0.32 -4.80 16 11 C 0.54 20.22 7.72 87.66 0.68 20.89 16 12 O -0.56 -26.13 15.27 -3.02 -0.05 -26.18 16 13 N -0.61 -16.18 2.98 -818.90 -2.44 -18.62 16 14 C 0.11 2.39 6.43 86.36 0.56 2.95 16 15 C -0.13 -1.95 5.55 30.67 0.17 -1.78 16 16 C 0.15 2.57 2.42 45.02 0.11 2.68 16 17 N -0.69 -11.49 5.07 -445.25 -2.26 -13.75 16 18 C 0.61 13.85 7.80 86.79 0.68 14.52 16 19 O -0.55 -16.52 16.75 -3.87 -0.06 -16.59 16 20 C 0.12 2.37 7.96 137.13 1.09 3.46 16 21 N -0.52 -9.61 11.41 -193.03 -2.20 -11.81 16 22 C 0.22 1.24 13.14 180.30 2.37 3.61 16 23 N -0.38 -1.58 6.93 -60.38 -0.42 -2.00 16 24 H 0.47 -2.47 8.96 -219.79 -1.97 -4.44 16 25 N -0.28 -3.61 11.98 -52.44 -0.63 -4.23 16 26 C -0.14 -2.60 5.65 30.66 0.17 -2.42 16 27 C 0.11 2.24 6.33 86.34 0.55 2.79 16 28 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 29 H 0.11 3.94 7.95 -2.39 -0.02 3.92 16 30 H 0.11 3.92 7.69 -2.40 -0.02 3.91 16 31 H 0.08 2.12 7.01 -2.39 -0.02 2.10 16 32 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.09 1.71 7.58 -2.39 -0.02 1.69 16 36 H 0.42 5.32 8.30 -92.71 -0.77 4.55 16 37 H 0.28 -1.83 8.06 -2.91 -0.02 -1.85 16 38 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.09 1.99 5.95 -2.39 -0.01 1.98 16 Total: -1.00 -91.88 364.02 -0.75 -92.62 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -1.64 Total: 7.62 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: 7.80 Total: 12.39 kcal Atomic # 7 Polarization: -98.63 SS G_CDS: -7.66 Total: -106.30 kcal Atomic # 8 Polarization: -42.65 SS G_CDS: -0.11 Total: -42.76 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: -8.37 SS G_CDS: -1.16 Total: -9.53 kcal Total: -91.88 -0.75 -92.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720393054.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.713 kcal (2) G-P(sol) polarization free energy of solvation -91.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds