Wall clock time and date at job start Tue Mar 31 2020 22:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86804 * 119.99890 * 2 1 4 4 H 1.48505 * 109.47224 * 240.00349 * 3 2 1 5 5 H 1.48504 * 109.46927 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47170 * 120.00292 * 3 2 1 7 7 C 1.38801 * 120.00336 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99705 * 179.97438 * 7 2 1 9 9 S 1.76203 * 119.99713 * 359.97438 * 7 2 1 10 10 C 1.80998 * 99.99682 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.46814 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00006 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00244 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00366 * 179.97438 * 13 11 10 15 15 H 1.09000 * 109.47175 * 325.00113 * 14 13 11 16 16 C 1.53006 * 109.46998 * 205.00244 * 14 13 11 17 17 N 1.46497 * 109.47007 * 55.00265 * 16 14 13 18 18 C 1.34778 * 119.99881 * 180.02562 * 17 16 14 19 19 O 1.21558 * 119.99940 * 359.97438 * 18 17 16 20 20 C 1.47865 * 120.00239 * 179.97438 * 18 17 16 21 21 N 1.34557 * 126.04870 * 179.97438 * 20 18 17 22 22 C 1.30869 * 107.26671 * 180.02562 * 21 20 18 23 23 N 1.34580 * 107.62953 * 0.02562 * 22 21 20 24 24 H 0.96997 * 125.75164 * 179.97438 * 23 22 21 25 25 N 1.28853 * 108.50026 * 359.73163 * 23 22 21 26 26 C 1.52997 * 109.47204 * 85.00218 * 14 13 11 27 27 C 1.52999 * 117.49623 * 8.74876 * 26 14 13 28 28 C 1.52998 * 117.49582 * 300.08913 * 26 14 13 29 29 H 0.97001 * 119.99836 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.47330 * 60.00340 * 10 9 7 31 31 H 1.08999 * 109.47469 * 300.00200 * 10 9 7 32 32 H 0.97001 * 119.99752 * 0.02562 * 13 11 10 33 33 H 1.09007 * 109.46744 * 174.99835 * 16 14 13 34 34 H 1.08995 * 109.46794 * 295.00080 * 16 14 13 35 35 H 0.96993 * 120.00553 * 359.97438 * 17 16 14 36 36 H 1.08003 * 126.18470 * 179.97438 * 22 21 20 37 37 H 1.08996 * 115.54958 * 154.41405 * 26 14 13 38 38 H 1.09005 * 117.49957 * 359.97438 * 27 26 14 39 39 H 1.09000 * 117.50113 * 145.02116 * 27 26 14 40 40 H 1.09003 * 117.49550 * 214.97411 * 28 26 14 41 41 H 1.08996 * 117.50013 * 359.97127 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6965 -1.2126 5 1 1.2852 2.7465 0.0006 6 1 3.1041 1.6964 1.2124 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5160 -3.8913 -0.0005 11 6 1.9875 -5.3026 -0.0012 12 8 0.7912 -5.5022 -0.0021 13 7 2.8442 -6.3430 -0.0018 14 6 2.3305 -7.7150 -0.0019 15 1 1.4150 -7.7602 0.5880 16 6 3.3764 -8.6512 0.6072 17 7 3.7488 -8.1670 1.9387 18 6 4.6618 -8.8378 2.6687 19 8 5.1759 -9.8449 2.2224 20 6 5.0382 -8.3488 4.0124 21 7 5.9305 -8.9203 4.8417 22 6 5.9780 -8.1881 5.9254 23 7 5.1161 -7.1670 5.7654 24 1 4.9431 -6.4648 6.4119 25 7 4.5633 -7.2762 4.6067 26 6 2.0333 -8.1483 -1.4388 27 6 2.4954 -7.2223 -2.5657 28 6 1.0070 -7.3304 -2.2252 29 1 -0.4850 0.8401 0.0004 30 1 3.1246 -3.7313 0.8895 31 1 3.1246 -3.7312 -0.8905 32 1 3.8010 -6.1834 -0.0015 33 1 2.9611 -9.6557 0.6889 34 1 4.2594 -8.6738 -0.0314 35 1 3.3390 -7.3632 2.2947 36 1 6.5964 -8.3709 6.7918 37 1 2.0692 -9.2219 -1.6230 38 1 3.0108 -6.3042 -2.2833 39 1 2.8349 -7.6868 -3.4915 40 1 0.3678 -7.8660 -2.9272 41 1 0.5431 -6.4840 -1.7187 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001720749715.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:04 Heat of formation + Delta-G solvation = 48.289324 kcal Electronic energy + Delta-G solvation = -26301.277866 eV Core-core repulsion = 22345.674591 eV Total energy + Delta-G solvation = -3955.603276 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.85053 -40.32724 -39.38582 -37.14240 -35.32008 -33.78767 -33.45454 -32.46610 -31.99926 -30.27355 -28.39495 -25.57443 -25.33716 -23.53504 -22.88571 -22.17775 -21.25652 -20.59337 -19.89758 -19.31013 -18.02553 -17.65197 -16.79508 -16.53276 -16.49010 -16.23619 -15.65886 -15.18258 -15.04776 -14.83854 -14.60706 -14.15724 -14.04242 -13.59586 -13.25164 -12.96139 -12.60110 -12.53180 -12.21266 -11.99285 -11.87491 -11.27615 -11.10858 -11.08158 -11.06919 -10.91403 -10.80624 -10.56671 -10.28916 -10.15506 -9.98625 -9.85949 -9.50771 -9.36945 -9.09781 -8.93406 -8.28913 -6.53879 -6.25450 -3.96064 0.97637 1.73990 2.19286 2.58767 2.93835 2.97473 3.07047 3.20191 3.24224 3.26969 3.60955 3.84873 3.93481 4.07259 4.16793 4.38309 4.49173 4.83741 4.96384 5.06718 5.09851 5.11516 5.20572 5.29379 5.42995 5.54026 5.58457 5.78727 5.80235 5.82751 5.84533 5.93142 6.06229 6.08573 6.20866 6.28160 6.50529 6.56432 7.06167 7.55460 7.57536 7.59852 7.86100 8.31132 8.51708 9.20033 10.81817 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.009308 B = 0.003069 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3007.404862 B = 9121.654283 C =11603.556241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.075 3.925 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.056 6.056 10 C -0.155 4.155 11 C 0.535 3.465 12 O -0.508 6.508 13 N -0.735 5.735 14 C 0.167 3.833 15 H 0.100 0.900 16 C 0.118 3.882 17 N -0.712 5.712 18 C 0.616 3.384 19 O -0.511 6.511 20 C 0.148 3.852 21 N -0.463 5.463 22 C 0.196 3.804 23 N -0.395 5.395 24 H 0.454 0.546 25 N -0.269 5.269 26 C -0.173 4.173 27 C -0.174 4.174 28 C -0.178 4.178 29 H 0.269 0.731 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.400 0.600 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.413 0.587 36 H 0.232 0.768 37 H 0.110 0.890 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.796 -16.488 8.326 21.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.744 3.256 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.686 4.686 8 H 0.090 0.910 9 S 0.171 5.829 10 C -0.306 4.306 11 C 0.322 3.678 12 O -0.382 6.382 13 N -0.390 5.390 14 C 0.061 3.939 15 H 0.118 0.882 16 C -0.006 4.006 17 N -0.365 5.365 18 C 0.397 3.603 19 O -0.382 6.382 20 C -0.133 4.133 21 N -0.187 5.187 22 C -0.102 4.102 23 N -0.118 5.118 24 H 0.301 0.699 25 N -0.111 5.111 26 C -0.193 4.193 27 C -0.211 4.211 28 C -0.214 4.214 29 H 0.079 0.921 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.234 0.766 33 H 0.106 0.894 34 H 0.099 0.901 35 H 0.249 0.751 36 H 0.248 0.752 37 H 0.128 0.872 38 H 0.114 0.886 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 8.736 -17.483 7.491 20.930 hybrid contribution 2.371 2.211 0.912 3.368 sum 11.106 -15.272 8.403 20.669 Atomic orbital electron populations 1.70001 1.05934 1.27594 1.46729 1.24977 0.95010 0.98986 0.94500 0.86244 0.79263 0.81305 0.78807 1.19916 1.20794 1.19981 1.22826 0.94863 0.91727 1.59136 0.91031 1.85368 1.04633 0.96205 1.96722 1.23549 1.06717 0.95401 1.04923 1.20306 0.86578 0.86203 0.74740 1.90652 1.15243 1.85378 1.46966 1.46155 1.10119 1.05058 1.77696 1.20630 0.97231 0.80920 0.95094 0.88182 1.21718 0.98699 0.98042 0.82114 1.45723 1.42547 1.30351 1.17927 1.16241 0.79610 0.83168 0.81268 1.90845 1.53199 1.24088 1.70073 1.23810 0.98500 0.92488 0.98480 1.71311 1.18267 1.27870 1.01275 1.26769 0.96388 0.86875 1.00135 1.45166 1.29861 1.23524 1.13287 0.69899 1.74331 1.20751 1.20191 0.95822 1.22567 1.07147 0.97769 0.91781 1.22936 0.98554 1.01426 0.98163 1.23387 0.91963 1.03640 1.02429 0.92107 0.89270 0.89275 0.76571 0.89413 0.90086 0.75109 0.75212 0.87168 0.88595 0.89296 0.89379 0.85854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.63 13.22 55.49 0.73 -24.90 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 20.99 29.55 -169.99 -5.02 15.97 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.54 -14.90 9.50 30.94 0.29 -14.61 16 8 H 0.07 1.88 7.80 -52.49 -0.41 1.47 16 9 S -0.06 -1.45 20.57 -107.50 -2.21 -3.66 16 10 C -0.16 -2.92 6.16 36.01 0.22 -2.70 16 11 C 0.53 8.83 6.69 -10.99 -0.07 8.76 16 12 O -0.51 -10.15 12.89 5.56 0.07 -10.08 16 13 N -0.74 -8.56 3.05 -53.80 -0.16 -8.72 16 14 C 0.17 1.75 2.59 -67.93 -0.18 1.57 16 15 H 0.10 1.21 7.58 -51.93 -0.39 0.82 16 16 C 0.12 1.09 5.21 -4.04 -0.02 1.07 16 17 N -0.71 -7.30 5.39 -61.24 -0.33 -7.63 16 18 C 0.62 7.81 7.83 -12.32 -0.10 7.71 16 19 O -0.51 -7.96 17.09 5.31 0.09 -7.87 16 20 C 0.15 1.76 7.96 -156.35 -1.24 0.51 16 21 N -0.46 -5.21 11.41 -12.37 -0.14 -5.35 16 22 C 0.20 1.17 13.14 -90.49 -1.19 -0.02 16 23 N -0.40 -2.30 6.93 29.56 0.20 -2.09 16 24 H 0.45 0.79 8.96 -190.21 -1.70 -0.91 16 25 N -0.27 -2.67 11.98 32.07 0.38 -2.28 16 26 C -0.17 -1.81 5.71 -90.62 -0.52 -2.33 16 27 C -0.17 -1.99 9.74 -26.69 -0.26 -2.25 16 28 C -0.18 -2.32 9.82 -26.69 -0.26 -2.58 16 29 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.09 1.56 8.14 -51.92 -0.42 1.13 16 31 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 32 H 0.40 3.89 8.60 -40.82 -0.35 3.54 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.41 4.18 7.84 -40.82 -0.32 3.86 16 36 H 0.23 0.12 8.06 -52.48 -0.42 -0.31 16 37 H 0.11 0.96 8.11 -51.93 -0.42 0.54 16 38 H 0.10 1.19 6.67 -51.93 -0.35 0.84 16 39 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.12 2.06 5.01 -51.93 -0.26 1.80 16 LS Contribution 369.05 15.07 5.56 5.56 Total: -1.00 -38.03 369.05 -10.54 -48.58 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -6.30 Total: 5.35 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -3.42 Total: -2.87 kcal Atomic # 7 Polarization: -51.67 SS G_CDS: 0.69 Total: -50.98 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: 0.16 Total: -17.95 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: -1.45 SS G_CDS: -2.21 Total: -3.66 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -38.03 -10.54 -48.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720749715.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.865 kcal (2) G-P(sol) polarization free energy of solvation -38.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds