Wall clock time and date at job start Tue Mar 31 2020 22:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86804 * 119.99890 * 2 1 4 4 H 1.48505 * 109.47224 * 240.00349 * 3 2 1 5 5 H 1.48504 * 109.46927 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47170 * 120.00292 * 3 2 1 7 7 C 1.38801 * 120.00336 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99705 * 179.97438 * 7 2 1 9 9 S 1.76203 * 119.99713 * 359.97438 * 7 2 1 10 10 C 1.80998 * 99.99682 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.46814 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00006 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00244 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00366 * 179.97438 * 13 11 10 15 15 H 1.09000 * 109.47175 * 325.00113 * 14 13 11 16 16 C 1.53006 * 109.46998 * 205.00244 * 14 13 11 17 17 N 1.46497 * 109.47007 * 55.00265 * 16 14 13 18 18 C 1.34778 * 119.99881 * 180.02562 * 17 16 14 19 19 O 1.21558 * 119.99940 * 359.97438 * 18 17 16 20 20 C 1.47865 * 120.00239 * 179.97438 * 18 17 16 21 21 N 1.34557 * 126.04870 * 179.97438 * 20 18 17 22 22 C 1.30869 * 107.26671 * 180.02562 * 21 20 18 23 23 N 1.34580 * 107.62953 * 0.02562 * 22 21 20 24 24 H 0.96997 * 125.75164 * 179.97438 * 23 22 21 25 25 N 1.28853 * 108.50026 * 359.73163 * 23 22 21 26 26 C 1.52997 * 109.47204 * 85.00218 * 14 13 11 27 27 C 1.52999 * 117.49623 * 8.74876 * 26 14 13 28 28 C 1.52998 * 117.49582 * 300.08913 * 26 14 13 29 29 H 0.97001 * 119.99836 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.47330 * 60.00340 * 10 9 7 31 31 H 1.08999 * 109.47469 * 300.00200 * 10 9 7 32 32 H 0.97001 * 119.99752 * 0.02562 * 13 11 10 33 33 H 1.09007 * 109.46744 * 174.99835 * 16 14 13 34 34 H 1.08995 * 109.46794 * 295.00080 * 16 14 13 35 35 H 0.96993 * 120.00553 * 359.97438 * 17 16 14 36 36 H 1.08003 * 126.18470 * 179.97438 * 22 21 20 37 37 H 1.08996 * 115.54958 * 154.41405 * 26 14 13 38 38 H 1.09005 * 117.49957 * 359.97438 * 27 26 14 39 39 H 1.09000 * 117.50113 * 145.02116 * 27 26 14 40 40 H 1.09003 * 117.49550 * 214.97411 * 28 26 14 41 41 H 1.08996 * 117.50013 * 359.97127 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6965 -1.2126 5 1 1.2852 2.7465 0.0006 6 1 3.1041 1.6964 1.2124 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5160 -3.8913 -0.0005 11 6 1.9875 -5.3026 -0.0012 12 8 0.7912 -5.5022 -0.0021 13 7 2.8442 -6.3430 -0.0018 14 6 2.3305 -7.7150 -0.0019 15 1 1.4150 -7.7602 0.5880 16 6 3.3764 -8.6512 0.6072 17 7 3.7488 -8.1670 1.9387 18 6 4.6618 -8.8378 2.6687 19 8 5.1759 -9.8449 2.2224 20 6 5.0382 -8.3488 4.0124 21 7 5.9305 -8.9203 4.8417 22 6 5.9780 -8.1881 5.9254 23 7 5.1161 -7.1670 5.7654 24 1 4.9431 -6.4648 6.4119 25 7 4.5633 -7.2762 4.6067 26 6 2.0333 -8.1483 -1.4388 27 6 2.4954 -7.2223 -2.5657 28 6 1.0070 -7.3304 -2.2252 29 1 -0.4850 0.8401 0.0004 30 1 3.1246 -3.7313 0.8895 31 1 3.1246 -3.7312 -0.8905 32 1 3.8010 -6.1834 -0.0015 33 1 2.9611 -9.6557 0.6889 34 1 4.2594 -8.6738 -0.0314 35 1 3.3390 -7.3632 2.2947 36 1 6.5964 -8.3709 6.7918 37 1 2.0692 -9.2219 -1.6230 38 1 3.0108 -6.3042 -2.2833 39 1 2.8349 -7.6868 -3.4915 40 1 0.3678 -7.8660 -2.9272 41 1 0.5431 -6.4840 -1.7187 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001720749715.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:03 Heat of formation + Delta-G solvation = 19.776378 kcal Electronic energy + Delta-G solvation = -26302.514280 eV Core-core repulsion = 22345.674591 eV Total energy + Delta-G solvation = -3956.839690 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.47502 -41.42467 -40.42516 -38.29057 -36.25311 -34.60968 -34.54288 -34.44329 -32.73719 -31.43809 -29.61329 -27.64653 -26.23020 -24.21015 -23.60476 -23.14895 -22.37278 -21.57403 -20.88817 -19.99300 -19.75348 -18.59386 -17.88000 -17.54666 -17.43865 -17.24693 -16.87340 -16.72607 -16.13868 -15.85356 -15.70765 -15.64666 -15.13679 -14.63953 -14.60685 -14.54485 -13.76574 -13.43723 -13.23606 -13.16690 -13.05875 -12.90305 -12.87144 -12.59769 -12.28360 -11.78693 -11.73534 -11.69539 -11.45493 -11.26953 -11.12472 -10.94088 -10.82985 -10.80981 -10.27291 -10.25461 -10.07502 -8.63501 -8.34106 -6.10760 0.23732 1.14002 1.27138 1.43002 1.46405 1.54820 1.57523 1.63870 1.98444 2.20092 2.24156 2.29232 2.93616 3.00052 3.18055 3.32903 3.49978 3.51134 3.90439 3.96349 4.05093 4.07994 4.25852 4.26960 4.31898 4.46378 4.53096 4.64973 4.85449 4.88097 4.89442 5.02577 5.18399 5.23852 5.26785 5.42140 5.43485 5.48716 5.90786 6.19910 6.21847 6.47313 6.85999 7.05527 7.07612 7.25571 8.74513 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.009308 B = 0.003069 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3007.404862 B = 9121.654283 C =11603.556241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.016 3.984 3 Si 0.994 3.006 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.549 4.549 8 H 0.080 0.920 9 S -0.140 6.140 10 C -0.133 4.133 11 C 0.541 3.459 12 O -0.545 6.545 13 N -0.711 5.711 14 C 0.172 3.828 15 H 0.086 0.914 16 C 0.125 3.875 17 N -0.702 5.702 18 C 0.615 3.385 19 O -0.548 6.548 20 C 0.121 3.879 21 N -0.512 5.512 22 C 0.220 3.780 23 N -0.381 5.381 24 H 0.472 0.528 25 N -0.282 5.282 26 C -0.154 4.154 27 C -0.168 4.168 28 C -0.203 4.203 29 H 0.271 0.729 30 H 0.107 0.893 31 H 0.104 0.896 32 H 0.414 0.586 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.414 0.586 36 H 0.284 0.716 37 H 0.139 0.861 38 H 0.085 0.915 39 H 0.108 0.892 40 H 0.098 0.902 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.370 -16.814 9.241 23.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.189 4.189 3 Si 0.816 3.184 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.697 4.697 8 H 0.098 0.902 9 S 0.087 5.913 10 C -0.284 4.284 11 C 0.328 3.672 12 O -0.422 6.422 13 N -0.365 5.365 14 C 0.067 3.933 15 H 0.104 0.896 16 C 0.002 3.998 17 N -0.355 5.355 18 C 0.397 3.603 19 O -0.422 6.422 20 C -0.159 4.159 21 N -0.237 5.237 22 C -0.077 4.077 23 N -0.106 5.106 24 H 0.323 0.677 25 N -0.125 5.125 26 C -0.173 4.173 27 C -0.206 4.206 28 C -0.239 4.239 29 H 0.080 0.920 30 H 0.125 0.875 31 H 0.122 0.878 32 H 0.251 0.749 33 H 0.117 0.883 34 H 0.110 0.890 35 H 0.250 0.750 36 H 0.299 0.701 37 H 0.157 0.843 38 H 0.103 0.897 39 H 0.127 0.873 40 H 0.116 0.884 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 11.333 -17.802 8.425 22.723 hybrid contribution 1.602 2.240 0.715 2.845 sum 12.934 -15.562 9.140 22.204 Atomic orbital electron populations 1.70165 1.07886 1.28617 1.47995 1.26064 0.95904 1.03146 0.93799 0.85067 0.77873 0.76011 0.79454 1.18833 1.20443 1.18650 1.23181 0.95301 0.92325 1.58853 0.90158 1.85506 1.10005 0.98752 1.97009 1.23387 1.03715 0.94843 1.06461 1.19885 0.86302 0.86222 0.74828 1.90664 1.16911 1.85684 1.48979 1.45856 1.10225 1.04652 1.75796 1.20662 0.97164 0.80012 0.95439 0.89596 1.21723 0.98541 0.97863 0.81660 1.45682 1.41777 1.29981 1.18028 1.16435 0.79357 0.82722 0.81754 1.90810 1.54700 1.25663 1.71077 1.23666 0.99911 0.93615 0.98691 1.71262 1.19461 1.29980 1.03039 1.27688 0.95127 0.85069 0.99833 1.45201 1.29051 1.23935 1.12422 0.67715 1.74241 1.21289 1.19748 0.97252 1.22649 1.04674 0.99014 0.90993 1.22979 0.96838 1.01361 0.99377 1.23262 0.93122 1.03629 1.03936 0.92024 0.87487 0.87766 0.74946 0.88289 0.89001 0.74968 0.70097 0.84314 0.89655 0.87333 0.88385 0.89654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.01 13.22 21.65 0.29 -54.72 16 2 C 0.02 0.89 5.49 84.86 0.47 1.35 16 3 Si 0.99 42.82 29.55 68.60 2.03 44.84 16 4 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 5 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 6 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 7 C -0.55 -30.65 9.50 67.95 0.65 -30.00 16 8 H 0.08 4.17 7.80 -2.91 -0.02 4.15 16 9 S -0.14 -7.46 20.57 -56.49 -1.16 -8.63 16 10 C -0.13 -4.96 6.16 71.24 0.44 -4.52 16 11 C 0.54 17.87 6.69 87.66 0.59 18.45 16 12 O -0.55 -22.50 12.89 -3.04 -0.04 -22.54 16 13 N -0.71 -15.73 3.05 -442.53 -1.35 -17.08 16 14 C 0.17 3.39 2.59 44.99 0.12 3.51 16 15 H 0.09 2.05 7.58 -2.39 -0.02 2.03 16 16 C 0.13 2.08 5.21 86.38 0.45 2.53 16 17 N -0.70 -13.70 5.39 -465.94 -2.51 -16.20 16 18 C 0.61 15.33 7.83 86.79 0.68 16.01 16 19 O -0.55 -17.01 17.09 -3.90 -0.07 -17.07 16 20 C 0.12 2.79 7.96 137.12 1.09 3.89 16 21 N -0.51 -10.91 11.41 -193.03 -2.20 -13.11 16 22 C 0.22 2.01 13.14 180.30 2.37 4.38 16 23 N -0.38 -3.54 6.93 -60.38 -0.42 -3.96 16 24 H 0.47 0.36 8.96 -219.80 -1.97 -1.61 16 25 N -0.28 -5.23 11.98 -52.44 -0.63 -5.86 16 26 C -0.15 -2.95 5.71 -10.80 -0.06 -3.01 16 27 C -0.17 -3.58 9.74 30.62 0.30 -3.28 16 28 C -0.20 -5.25 9.82 30.62 0.30 -4.95 16 29 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 30 H 0.11 3.61 8.14 -2.39 -0.02 3.59 16 31 H 0.10 3.57 8.14 -2.40 -0.02 3.56 16 32 H 0.41 7.19 8.60 -92.71 -0.80 6.39 16 33 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 34 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.41 8.01 7.84 -92.71 -0.73 7.28 16 36 H 0.28 -0.97 8.06 -2.91 -0.02 -1.00 16 37 H 0.14 1.95 8.11 -2.39 -0.02 1.93 16 38 H 0.08 1.99 6.67 -2.38 -0.02 1.98 16 39 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 41 H 0.09 2.98 5.01 -2.39 -0.01 2.96 16 Total: -1.00 -87.26 369.05 -1.06 -88.32 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: -2.37 Total: 21.66 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: 7.38 Total: 4.36 kcal Atomic # 7 Polarization: -104.11 SS G_CDS: -6.82 Total: -110.94 kcal Atomic # 8 Polarization: -39.51 SS G_CDS: -0.11 Total: -39.61 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.84 kcal Atomic # 16 Polarization: -7.46 SS G_CDS: -1.16 Total: -8.63 kcal Total: -87.26 -1.06 -88.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720749715.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.093 kcal (2) G-P(sol) polarization free energy of solvation -87.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds