Wall clock time and date at job start Tue Mar 31 2020 22:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86795 * 120.00249 * 2 1 4 4 H 1.48505 * 109.47059 * 270.00809 * 3 2 1 5 5 H 1.48496 * 109.47090 * 30.00214 * 3 2 1 6 6 H 1.48498 * 109.47483 * 150.00491 * 3 2 1 7 7 C 1.38806 * 120.00014 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00045 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99588 * 359.97438 * 7 2 1 10 10 C 1.81005 * 99.99828 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47365 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99910 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00280 * 179.97438 * 11 10 9 14 14 C 1.47426 * 125.64489 * 0.04405 * 13 11 10 15 15 C 1.54914 * 104.82992 * 204.09098 * 14 13 11 16 16 C 1.55405 * 101.66697 * 323.07703 * 15 14 13 17 17 H 1.09000 * 110.69068 * 277.04987 * 16 15 14 18 18 N 1.46495 * 110.85076 * 153.69955 * 16 15 14 19 19 C 1.34776 * 119.99803 * 160.08868 * 18 16 15 20 20 O 1.21285 * 120.00103 * 359.97438 * 19 18 16 21 21 C 1.50703 * 119.99890 * 180.02562 * 19 18 16 22 22 N 1.46500 * 109.47022 * 179.97438 * 21 19 18 23 23 N 1.28604 * 124.61839 * 269.69636 * 22 21 19 24 24 C 1.31381 * 108.71931 * 179.82605 * 23 22 21 25 25 C 1.39681 * 105.89675 * 0.41848 * 24 23 22 26 26 N 1.28598 * 124.61932 * 89.99450 * 22 21 19 27 27 C 1.47018 * 125.64993 * 180.02562 * 13 11 10 28 28 H 0.97000 * 119.99829 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47326 * 59.99852 * 10 9 7 30 30 H 1.09003 * 109.46652 * 299.99782 * 10 9 7 31 31 H 1.08999 * 110.36956 * 322.93474 * 14 13 11 32 32 H 1.09003 * 110.36599 * 85.25378 * 14 13 11 33 33 H 1.09000 * 111.00339 * 81.07133 * 15 14 13 34 34 H 1.09000 * 111.00165 * 204.88167 * 15 14 13 35 35 H 0.96997 * 120.00433 * 340.08762 * 18 16 15 36 36 H 1.08998 * 109.46987 * 299.99488 * 21 19 18 37 37 H 1.09000 * 109.47441 * 59.99528 * 21 19 18 38 38 H 1.07996 * 127.05115 * 180.15588 * 24 23 22 39 39 H 1.07999 * 127.04866 * 179.76656 * 25 24 23 40 40 H 1.09002 * 109.88241 * 298.39592 * 27 13 11 41 41 H 1.09000 * 109.88049 * 59.40721 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4479 2.6526 0.7001 6 1 3.5480 1.4401 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5158 -3.8915 -0.0005 11 6 1.9873 -5.3028 0.0001 12 8 0.7910 -5.5023 0.0000 13 7 2.8440 -6.3432 -0.0003 14 6 4.3150 -6.2449 -0.0004 15 6 4.8017 -7.5823 -0.6122 16 6 3.7708 -8.5883 -0.0288 17 1 4.0571 -8.8929 0.9778 18 7 3.6277 -9.7545 -0.9038 19 6 3.1153 -10.9026 -0.4181 20 8 2.7731 -10.9703 0.7435 21 6 2.9686 -12.1024 -1.3180 22 7 2.3929 -13.2150 -0.5584 23 7 3.0784 -14.0932 0.0841 24 6 2.2509 -14.9407 0.6526 25 6 0.9675 -14.5182 0.2985 26 7 1.1333 -13.4497 -0.4478 27 6 2.4664 -7.7641 -0.0003 28 1 -0.4850 0.8401 0.0004 29 1 3.1244 -3.7315 0.8894 30 1 3.1243 -3.7314 -0.8906 31 1 4.6391 -5.4059 -0.6161 32 1 4.6880 -6.1355 1.0179 33 1 4.7471 -7.5569 -1.7005 34 1 5.8122 -7.8194 -0.2792 35 1 3.9017 -9.7006 -1.8327 36 1 2.3123 -11.8532 -2.1518 37 1 3.9475 -12.3919 -1.7001 38 1 2.5101 -15.7921 1.2643 39 1 0.0308 -14.9758 0.5807 40 1 1.9004 -7.9973 0.9016 41 1 1.8668 -7.9883 -0.8825 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001720777998.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:25 Heat of formation + Delta-G solvation = 56.207307 kcal Electronic energy + Delta-G solvation = -25667.987092 eV Core-core repulsion = 21712.727165 eV Total energy + Delta-G solvation = -3955.259926 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.86553 -40.61833 -39.45593 -37.38098 -34.67759 -34.17263 -32.72630 -32.44899 -31.26014 -29.80259 -29.09588 -27.54773 -25.50868 -23.82362 -23.21253 -22.69634 -21.43794 -21.02327 -19.42504 -18.34980 -18.01725 -17.68799 -17.05308 -16.62427 -16.14922 -16.05300 -15.62474 -15.18779 -14.96505 -14.82239 -14.74062 -14.24438 -14.10050 -13.90390 -13.64938 -13.15764 -12.88145 -12.60057 -12.56676 -12.25688 -11.99810 -11.95985 -11.84399 -11.25099 -11.11657 -11.08009 -11.04244 -10.79133 -10.75266 -10.62846 -9.86417 -9.76861 -9.65626 -9.42789 -9.08593 -8.59854 -8.25736 -6.52816 -6.23446 -3.94575 1.34909 1.74869 1.93281 2.19960 2.51190 2.92474 3.01803 3.20691 3.24340 3.28854 3.57126 3.76057 3.89249 4.09519 4.17808 4.22651 4.30255 4.43467 4.60027 4.72351 4.84160 4.99888 5.01252 5.04150 5.11640 5.33057 5.37660 5.48028 5.56908 5.60932 5.64837 5.74025 5.85645 5.86921 5.93228 6.08818 6.24566 6.31940 6.80707 7.54042 7.56443 7.58313 7.98841 8.33097 8.50111 9.21613 10.83973 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.032912 B = 0.001796 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.546492 B =15582.825639 C =16183.231587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.146 4.146 11 C 0.548 3.452 12 O -0.512 6.512 13 N -0.626 5.626 14 C 0.102 3.898 15 C -0.137 4.137 16 C 0.136 3.864 17 H 0.107 0.893 18 N -0.714 5.714 19 C 0.503 3.497 20 O -0.512 6.512 21 C 0.124 3.876 22 N -0.148 5.148 23 N -0.283 5.283 24 C -0.023 4.023 25 C -0.022 4.022 26 N -0.279 5.279 27 C 0.099 3.901 28 H 0.269 0.731 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.406 0.594 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.199 0.801 39 H 0.199 0.801 40 H 0.073 0.927 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.818 -27.755 -4.440 30.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.297 4.297 11 C 0.337 3.663 12 O -0.385 6.385 13 N -0.365 5.365 14 C -0.021 4.021 15 C -0.176 4.176 16 C 0.031 3.969 17 H 0.125 0.875 18 N -0.368 5.368 19 C 0.286 3.714 20 O -0.385 6.385 21 C -0.001 4.001 22 N -0.047 5.047 23 N -0.124 5.124 24 C -0.206 4.206 25 C -0.206 4.206 26 N -0.120 5.120 27 C -0.025 4.025 28 H 0.079 0.921 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.111 0.889 35 H 0.242 0.758 36 H 0.158 0.842 37 H 0.157 0.843 38 H 0.216 0.784 39 H 0.216 0.784 40 H 0.091 0.909 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 11.092 -26.861 -4.307 29.378 hybrid contribution 1.708 0.580 0.113 1.807 sum 12.800 -26.280 -4.193 29.531 Atomic orbital electron populations 1.70019 1.05962 1.27492 1.46733 1.25000 0.95034 0.99043 0.94513 0.86159 0.79403 0.81539 0.78338 1.20266 1.20728 1.19693 1.22852 0.94887 0.91573 1.59091 0.90902 1.85450 1.04858 0.96345 1.96715 1.23508 1.06552 0.94790 1.04826 1.20079 0.85676 0.85398 0.75189 1.90726 1.14971 1.85062 1.47784 1.48447 1.06579 1.05296 1.76171 1.22277 0.80571 0.97804 1.01497 1.23132 0.98953 0.93872 1.01609 1.22057 0.94991 0.84302 0.95540 0.87474 1.45761 1.65105 1.11100 1.14790 1.20530 0.77935 0.84150 0.88827 1.90838 1.47140 1.83249 1.17283 1.21648 1.02950 0.82263 0.93199 1.47274 1.00970 1.20290 1.36204 1.74033 1.27056 1.01491 1.09796 1.24807 0.90160 1.01712 1.03924 1.24834 1.00421 0.94964 1.00343 1.74091 1.00849 1.17508 1.19512 1.22200 0.96406 0.80829 1.03081 0.92149 0.89195 0.89237 0.89549 0.90813 0.89659 0.88852 0.75846 0.84230 0.84310 0.78438 0.78406 0.90895 0.91168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.13 13.22 55.49 0.73 -25.40 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.27 29.55 -169.99 -5.02 16.25 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.54 -15.19 9.50 30.94 0.29 -14.89 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -2.96 5.16 36.00 0.19 -2.77 16 11 C 0.55 10.61 7.87 -10.99 -0.09 10.53 16 12 O -0.51 -12.15 16.19 5.56 0.09 -12.06 16 13 N -0.63 -8.82 3.33 -170.52 -0.57 -9.39 16 14 C 0.10 0.95 6.69 -2.53 -0.02 0.93 16 15 C -0.14 -0.81 6.71 -24.44 -0.16 -0.97 16 16 C 0.14 1.12 3.25 -65.96 -0.21 0.90 16 17 H 0.11 1.01 7.70 -51.93 -0.40 0.61 16 18 N -0.71 -4.28 5.13 -51.90 -0.27 -4.55 16 19 C 0.50 4.36 7.90 -10.98 -0.09 4.27 16 20 O -0.51 -7.19 16.16 5.55 0.09 -7.10 16 21 C 0.12 0.72 7.02 -5.19 -0.04 0.69 16 22 N -0.15 -1.47 3.44 -11.66 -0.04 -1.51 16 23 N -0.28 -2.92 12.05 30.68 0.37 -2.55 16 24 C -0.02 -0.18 12.20 -17.21 -0.21 -0.39 16 25 C -0.02 -0.19 12.20 -17.21 -0.21 -0.40 16 26 N -0.28 -3.06 12.05 30.68 0.37 -2.69 16 27 C 0.10 1.24 6.61 -3.07 -0.02 1.22 16 28 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 30 H 0.09 1.64 7.85 -51.91 -0.41 1.23 16 31 H 0.09 0.76 7.48 -51.93 -0.39 0.37 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.40 8.01 -51.93 -0.42 -0.01 16 34 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.41 0.94 8.53 -40.82 -0.35 0.59 16 36 H 0.14 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.14 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.20 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.20 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.07 0.92 8.03 -51.93 -0.42 0.50 16 LS Contribution 372.27 15.07 5.61 5.61 Total: -1.00 -41.99 372.27 -6.81 -48.80 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: -5.30 Total: -2.66 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: -0.66 Total: 1.11 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: 0.60 Total: -46.09 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: 0.18 Total: -19.16 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -41.99 -6.81 -48.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720777998.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.011 kcal (2) G-P(sol) polarization free energy of solvation -41.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds