Wall clock time and date at job start Tue Mar 31 2020 22:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86795 * 120.00249 * 2 1 4 4 H 1.48505 * 109.47059 * 270.00809 * 3 2 1 5 5 H 1.48496 * 109.47090 * 30.00214 * 3 2 1 6 6 H 1.48498 * 109.47483 * 150.00491 * 3 2 1 7 7 C 1.38806 * 120.00014 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00045 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99588 * 359.97438 * 7 2 1 10 10 C 1.81005 * 99.99828 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47365 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99910 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00280 * 179.97438 * 11 10 9 14 14 C 1.47426 * 125.64489 * 0.04405 * 13 11 10 15 15 C 1.54914 * 104.82992 * 204.09098 * 14 13 11 16 16 C 1.55405 * 101.66697 * 323.07703 * 15 14 13 17 17 H 1.09000 * 110.69068 * 277.04987 * 16 15 14 18 18 N 1.46495 * 110.85076 * 153.69955 * 16 15 14 19 19 C 1.34776 * 119.99803 * 160.08868 * 18 16 15 20 20 O 1.21285 * 120.00103 * 359.97438 * 19 18 16 21 21 C 1.50703 * 119.99890 * 180.02562 * 19 18 16 22 22 N 1.46500 * 109.47022 * 179.97438 * 21 19 18 23 23 N 1.28604 * 124.61839 * 269.69636 * 22 21 19 24 24 C 1.31381 * 108.71931 * 179.82605 * 23 22 21 25 25 C 1.39681 * 105.89675 * 0.41848 * 24 23 22 26 26 N 1.28598 * 124.61932 * 89.99450 * 22 21 19 27 27 C 1.47018 * 125.64993 * 180.02562 * 13 11 10 28 28 H 0.97000 * 119.99829 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47326 * 59.99852 * 10 9 7 30 30 H 1.09003 * 109.46652 * 299.99782 * 10 9 7 31 31 H 1.08999 * 110.36956 * 322.93474 * 14 13 11 32 32 H 1.09003 * 110.36599 * 85.25378 * 14 13 11 33 33 H 1.09000 * 111.00339 * 81.07133 * 15 14 13 34 34 H 1.09000 * 111.00165 * 204.88167 * 15 14 13 35 35 H 0.96997 * 120.00433 * 340.08762 * 18 16 15 36 36 H 1.08998 * 109.46987 * 299.99488 * 21 19 18 37 37 H 1.09000 * 109.47441 * 59.99528 * 21 19 18 38 38 H 1.07996 * 127.05115 * 180.15588 * 24 23 22 39 39 H 1.07999 * 127.04866 * 179.76656 * 25 24 23 40 40 H 1.09002 * 109.88241 * 298.39592 * 27 13 11 41 41 H 1.09000 * 109.88049 * 59.40721 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4479 2.6526 0.7001 6 1 3.5480 1.4401 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5158 -3.8915 -0.0005 11 6 1.9873 -5.3028 0.0001 12 8 0.7910 -5.5023 0.0000 13 7 2.8440 -6.3432 -0.0003 14 6 4.3150 -6.2449 -0.0004 15 6 4.8017 -7.5823 -0.6122 16 6 3.7708 -8.5883 -0.0288 17 1 4.0571 -8.8929 0.9778 18 7 3.6277 -9.7545 -0.9038 19 6 3.1153 -10.9026 -0.4181 20 8 2.7731 -10.9703 0.7435 21 6 2.9686 -12.1024 -1.3180 22 7 2.3929 -13.2150 -0.5584 23 7 3.0784 -14.0932 0.0841 24 6 2.2509 -14.9407 0.6526 25 6 0.9675 -14.5182 0.2985 26 7 1.1333 -13.4497 -0.4478 27 6 2.4664 -7.7641 -0.0003 28 1 -0.4850 0.8401 0.0004 29 1 3.1244 -3.7315 0.8894 30 1 3.1243 -3.7314 -0.8906 31 1 4.6391 -5.4059 -0.6161 32 1 4.6880 -6.1355 1.0179 33 1 4.7471 -7.5569 -1.7005 34 1 5.8122 -7.8194 -0.2792 35 1 3.9017 -9.7006 -1.8327 36 1 2.3123 -11.8532 -2.1518 37 1 3.9475 -12.3919 -1.7001 38 1 2.5101 -15.7921 1.2643 39 1 0.0308 -14.9758 0.5807 40 1 1.9004 -7.9973 0.9016 41 1 1.8668 -7.9883 -0.8825 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001720777998.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:24 Heat of formation + Delta-G solvation = 21.925730 kcal Electronic energy + Delta-G solvation = -25669.473652 eV Core-core repulsion = 21712.727165 eV Total energy + Delta-G solvation = -3956.746487 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.48280 -41.49047 -40.57467 -38.55102 -35.55600 -34.76822 -34.59562 -33.38836 -32.36091 -30.92725 -29.91691 -28.48994 -27.64468 -24.81410 -23.82128 -23.38088 -22.16915 -21.70358 -20.74899 -19.68250 -18.90348 -18.64406 -18.14344 -17.77214 -16.90201 -16.88250 -16.82399 -16.61344 -16.38262 -15.81647 -15.66687 -15.47810 -15.18128 -14.81916 -14.58280 -14.46585 -14.10467 -13.74663 -13.51114 -13.32687 -13.17291 -12.94098 -12.88929 -12.73438 -12.62573 -12.58149 -11.92694 -11.80071 -11.74279 -11.50724 -11.32682 -11.14966 -11.08780 -10.42034 -10.29677 -10.26632 -9.81357 -8.70366 -8.35476 -6.14922 0.71226 1.16786 1.26236 1.29752 1.42726 1.43871 1.49568 1.55543 1.60748 1.88673 2.19219 2.26295 2.98863 3.18110 3.30140 3.32303 3.45134 3.51071 3.84318 3.96059 3.99380 4.02926 4.11469 4.17407 4.21581 4.29082 4.41696 4.58255 4.58547 4.66570 4.70813 4.93234 5.00473 5.05316 5.23713 5.29460 5.33542 5.40904 5.66336 6.18867 6.27167 6.31677 6.98322 7.04035 7.05558 7.35365 8.73884 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.032912 B = 0.001796 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.546492 B =15582.825639 C =16183.231587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 1.001 2.999 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.256 1.256 7 C -0.544 4.544 8 H 0.086 0.914 9 S -0.157 6.157 10 C -0.117 4.117 11 C 0.544 3.456 12 O -0.571 6.571 13 N -0.615 5.615 14 C 0.086 3.914 15 C -0.115 4.115 16 C 0.147 3.853 17 H 0.097 0.903 18 N -0.693 5.693 19 C 0.502 3.498 20 O -0.573 6.573 21 C 0.119 3.881 22 N -0.158 5.158 23 N -0.308 5.308 24 C -0.025 4.025 25 C -0.028 4.028 26 N -0.316 5.316 27 C 0.097 3.903 28 H 0.271 0.729 29 H 0.108 0.892 30 H 0.115 0.885 31 H 0.100 0.900 32 H 0.086 0.914 33 H 0.107 0.893 34 H 0.128 0.872 35 H 0.428 0.572 36 H 0.166 0.834 37 H 0.178 0.822 38 H 0.231 0.769 39 H 0.227 0.773 40 H 0.039 0.961 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.586 -28.447 -5.617 33.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.193 4.193 3 Si 0.822 3.178 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.180 1.180 7 C -0.692 4.692 8 H 0.104 0.896 9 S 0.070 5.930 10 C -0.268 4.268 11 C 0.332 3.668 12 O -0.449 6.449 13 N -0.351 5.351 14 C -0.035 4.035 15 C -0.153 4.153 16 C 0.041 3.959 17 H 0.115 0.885 18 N -0.348 5.348 19 C 0.287 3.713 20 O -0.451 6.451 21 C -0.004 4.004 22 N -0.058 5.058 23 N -0.149 5.149 24 C -0.208 4.208 25 C -0.211 4.211 26 N -0.157 5.157 27 C -0.028 4.028 28 H 0.080 0.920 29 H 0.126 0.874 30 H 0.133 0.867 31 H 0.118 0.882 32 H 0.104 0.896 33 H 0.125 0.875 34 H 0.146 0.854 35 H 0.268 0.732 36 H 0.184 0.816 37 H 0.195 0.805 38 H 0.247 0.753 39 H 0.243 0.757 40 H 0.057 0.943 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 14.950 -27.581 -5.542 31.858 hybrid contribution 0.562 0.639 0.508 0.991 sum 15.513 -26.942 -5.034 31.493 Atomic orbital electron populations 1.70196 1.08083 1.28639 1.47971 1.26173 0.95971 1.03442 0.93684 0.84917 0.78184 0.75788 0.78861 1.19144 1.20476 1.18017 1.23193 0.95405 0.91657 1.58946 0.89592 1.85694 1.10726 0.99522 1.97065 1.23289 1.03390 0.93303 1.06788 1.19933 0.85398 0.86173 0.75269 1.90700 1.17475 1.85836 1.50925 1.48358 1.08518 1.04764 1.73443 1.22765 0.77068 1.00562 1.03132 1.23146 0.99383 0.90156 1.02647 1.21843 0.93098 0.84827 0.96143 0.88493 1.45569 1.63902 1.09659 1.15635 1.21099 0.76641 0.85264 0.88329 1.90816 1.49868 1.84351 1.20035 1.22064 1.05520 0.80296 0.92540 1.47621 1.00666 1.20932 1.36579 1.73985 1.27957 1.02282 1.10628 1.25434 0.89801 1.02082 1.03489 1.25427 1.01866 0.94334 0.99488 1.74042 1.01855 1.18830 1.20952 1.22305 0.98757 0.80608 1.01098 0.92004 0.87360 0.86722 0.88218 0.89572 0.87455 0.85352 0.73209 0.81625 0.80508 0.75287 0.75697 0.94280 0.91929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.34 13.22 21.65 0.29 -56.05 16 2 C 0.01 0.68 5.49 84.86 0.47 1.14 16 3 Si 1.00 43.24 29.55 68.60 2.03 45.27 16 4 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 5 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 6 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 7 C -0.54 -30.94 9.50 67.96 0.65 -30.30 16 8 H 0.09 4.48 7.80 -2.92 -0.02 4.45 16 9 S -0.16 -8.86 20.57 -56.49 -1.16 -10.02 16 10 C -0.12 -4.67 5.16 71.24 0.37 -4.31 16 11 C 0.54 21.37 7.87 87.66 0.69 22.06 16 12 O -0.57 -28.55 16.19 -3.04 -0.05 -28.60 16 13 N -0.62 -16.85 3.33 -811.79 -2.70 -19.55 16 14 C 0.09 1.33 6.69 86.86 0.58 1.91 16 15 C -0.12 -0.85 6.71 32.08 0.22 -0.64 16 16 C 0.15 2.13 3.25 46.27 0.15 2.28 16 17 H 0.10 1.71 7.70 -2.39 -0.02 1.69 16 18 N -0.69 -6.69 5.13 -436.51 -2.24 -8.93 16 19 C 0.50 8.17 7.90 87.66 0.69 8.86 16 20 O -0.57 -16.42 16.16 -3.04 -0.05 -16.47 16 21 C 0.12 1.17 7.02 85.63 0.60 1.77 16 22 N -0.16 -3.02 3.44 -190.80 -0.66 -3.67 16 23 N -0.31 -6.07 12.05 -56.86 -0.69 -6.75 16 24 C -0.03 -0.38 12.20 85.11 1.04 0.66 16 25 C -0.03 -0.46 12.20 85.11 1.04 0.58 16 26 N -0.32 -6.86 12.05 -56.86 -0.69 -7.55 16 27 C 0.10 2.44 6.61 86.73 0.57 3.02 16 28 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 29 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 30 H 0.11 3.99 7.85 -2.39 -0.02 3.98 16 31 H 0.10 1.35 7.48 -2.39 -0.02 1.33 16 32 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.11 0.42 8.01 -2.39 -0.02 0.40 16 34 H 0.13 0.24 8.14 -2.39 -0.02 0.22 16 35 H 0.43 0.36 8.53 -92.71 -0.79 -0.43 16 36 H 0.17 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.18 0.26 8.14 -2.39 -0.02 0.24 16 38 H 0.23 1.50 8.06 -2.91 -0.02 1.47 16 39 H 0.23 1.89 8.06 -2.91 -0.02 1.87 16 40 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.06 1.67 8.03 -2.39 -0.02 1.65 16 Total: -1.00 -99.17 372.27 1.42 -97.74 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: 0.28 Total: 7.55 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: 7.06 Total: 7.04 kcal Atomic # 7 Polarization: -95.83 SS G_CDS: -6.68 Total: -102.51 kcal Atomic # 8 Polarization: -44.97 SS G_CDS: -0.10 Total: -45.07 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Atomic # 16 Polarization: -8.86 SS G_CDS: -1.16 Total: -10.02 kcal Total: -99.17 1.42 -97.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720777998.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.670 kcal (2) G-P(sol) polarization free energy of solvation -99.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds