Wall clock time and date at job start Tue Mar 31 2020 22:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.33319 * 126.80906 * 2 1 4 4 N 1.28513 * 109.43307 * 180.25825 * 3 2 1 5 5 N 1.28713 * 110.64140 * 359.76634 * 4 3 2 6 6 H 0.97001 * 126.03488 * 179.97438 * 5 4 3 7 7 C 1.37000 * 126.81415 * 179.86611 * 2 1 3 8 8 C 1.47235 * 127.18941 * 0.02562 * 7 2 1 9 9 O 1.21617 * 120.00373 * 359.70955 * 8 7 2 10 10 N 1.34779 * 119.99931 * 179.70620 * 8 7 2 11 11 C 1.46497 * 119.99983 * 180.02562 * 10 8 7 12 12 H 1.08998 * 112.85041 * 23.79727 * 11 10 8 13 13 C 1.53780 * 113.61705 * 155.00414 * 11 10 8 14 14 C 1.53772 * 87.08584 * 89.19471 * 13 11 10 15 15 H 1.09002 * 113.61695 * 270.80097 * 14 13 11 16 16 N 1.46496 * 113.61598 * 139.98595 * 14 13 11 17 17 C 1.34777 * 120.00266 * 155.00257 * 16 14 13 18 18 O 1.21274 * 120.00135 * 0.27234 * 17 16 14 19 19 C 1.50706 * 119.99766 * 179.97438 * 17 16 14 20 20 S 1.81003 * 109.46851 * 179.97438 * 19 17 16 21 21 C 1.76196 * 99.99843 * 180.02562 * 20 19 17 22 22 H 1.07998 * 120.00031 * 359.97438 * 21 20 19 23 23 C 1.38802 * 119.99637 * 180.02562 * 21 20 19 24 24 N 1.31628 * 120.00514 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99567 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.46941 * 90.00284 * 25 23 21 27 27 H 1.48505 * 109.46872 * 209.99797 * 25 23 21 28 28 H 1.48493 * 109.47194 * 329.99916 * 25 23 21 29 29 C 1.53775 * 87.08153 * 25.43413 * 14 13 11 30 30 H 1.09001 * 109.47120 * 270.13154 * 1 2 3 31 31 H 1.08994 * 109.47266 * 30.13327 * 1 2 3 32 32 H 1.09004 * 109.47023 * 150.13607 * 1 2 3 33 33 H 0.97004 * 120.00002 * 359.97438 * 10 8 7 34 34 H 1.09008 * 113.61250 * 334.64019 * 13 11 10 35 35 H 1.09001 * 113.61649 * 203.74950 * 13 11 10 36 36 H 0.96999 * 119.99691 * 334.99242 * 16 14 13 37 37 H 1.09000 * 109.47161 * 299.99737 * 19 17 16 38 38 H 1.09001 * 109.46740 * 59.99879 * 19 17 16 39 39 H 0.96995 * 120.00407 * 179.97438 * 24 23 21 40 40 H 1.09004 * 113.61935 * 89.11558 * 29 14 13 41 41 H 1.09009 * 113.61608 * 220.02215 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3058 1.0674 0.0000 4 7 3.5323 0.6836 -0.0055 5 7 3.6057 -0.6014 -0.0043 6 1 4.4213 -1.1264 -0.0079 7 6 2.3280 -1.0968 0.0026 8 6 1.9223 -2.5121 0.0053 9 8 0.7423 -2.8065 0.0109 10 7 2.8586 -3.4816 0.0017 11 6 2.4549 -4.8898 0.0039 12 1 1.4531 -5.0436 -0.3971 13 6 3.5101 -5.8342 -0.5956 14 6 4.0991 -5.9476 0.8203 15 1 4.8507 -5.1901 1.0426 16 7 4.5368 -7.3020 1.1670 17 6 5.4910 -7.4834 2.1014 18 8 5.9838 -6.5256 2.6587 19 6 5.9408 -8.8767 2.4584 20 16 7.2224 -8.7888 3.7335 21 6 7.5545 -10.5053 3.9524 22 1 7.0146 -11.2381 3.3712 23 6 8.5093 -10.9155 4.8725 24 7 9.1663 -10.0224 5.5820 25 14 8.8609 -12.7354 5.1051 26 1 9.9386 -13.1543 4.1733 27 1 9.2931 -12.9812 6.5044 28 1 7.6305 -13.5173 4.8225 29 6 2.6967 -5.5998 1.3465 30 1 -0.3633 0.0024 1.0277 31 1 -0.3633 0.8887 -0.5159 32 1 -0.3633 -0.8912 -0.5117 33 1 3.7998 -3.2468 -0.0031 34 1 4.1766 -5.3480 -1.3082 35 1 3.0956 -6.7692 -0.9724 36 1 4.1397 -8.0682 0.7242 37 1 5.0918 -9.4473 2.8349 38 1 6.3436 -9.3668 1.5720 39 1 9.8333 -10.3091 6.2252 40 1 2.0597 -6.4707 1.5008 41 1 2.7064 -4.9243 2.2020 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001720792179.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:11 Heat of formation + Delta-G solvation = 39.933782 kcal Electronic energy + Delta-G solvation = -25452.593063 eV Core-core repulsion = 21496.627464 eV Total energy + Delta-G solvation = -3955.965599 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.87494 -40.85896 -39.46599 -38.11688 -34.95750 -34.10433 -33.09581 -32.48617 -32.34359 -29.29967 -28.34826 -26.19713 -25.63157 -25.29026 -24.22292 -22.72496 -21.35464 -20.62885 -20.09593 -19.50409 -17.89723 -17.21475 -17.02211 -16.86489 -16.45520 -16.16338 -15.35422 -15.18005 -14.97711 -14.85568 -14.26983 -14.17898 -14.05989 -13.49054 -13.35107 -13.16706 -13.07013 -12.95727 -12.80101 -12.39192 -12.30789 -12.06682 -11.65757 -11.26120 -11.11840 -11.08186 -11.06367 -11.01828 -10.79320 -10.68675 -9.90654 -9.87155 -9.64885 -9.50962 -9.12760 -9.00971 -8.31250 -6.56928 -6.27306 -3.98517 0.34365 1.77685 1.89348 2.30281 2.48343 2.92565 2.94274 3.18225 3.23753 3.27437 3.61976 3.73306 3.91798 4.01520 4.11824 4.15000 4.30592 4.50508 4.53869 4.59532 4.97705 5.08118 5.13632 5.20636 5.24396 5.24720 5.28495 5.40959 5.45426 5.49804 5.62936 5.68788 5.79944 5.83289 5.97347 6.05148 6.05912 6.49246 6.69096 7.40198 7.53815 7.56750 7.76836 8.29513 8.47206 9.18169 10.80099 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.027110 B = 0.001757 C = 0.001689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.596440 B =15936.299802 C =16574.606145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.065 3.935 3 N -0.269 5.269 4 N -0.038 5.038 5 N -0.374 5.374 6 H 0.452 0.548 7 C -0.077 4.077 8 C 0.602 3.398 9 O -0.507 6.507 10 N -0.708 5.708 11 C 0.123 3.877 12 H 0.115 0.885 13 C -0.152 4.152 14 C 0.125 3.875 15 H 0.112 0.888 16 N -0.728 5.728 17 C 0.534 3.466 18 O -0.518 6.518 19 C -0.155 4.155 20 S -0.061 6.061 21 C -0.537 4.537 22 H 0.073 0.927 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 C -0.164 4.164 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.398 0.602 34 H 0.081 0.919 35 H 0.104 0.896 36 H 0.400 0.600 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.269 0.731 40 H 0.099 0.901 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.164 13.541 -16.162 26.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.075 4.075 3 N -0.136 5.136 4 N -0.020 5.020 5 N -0.101 5.101 6 H 0.299 0.701 7 C -0.210 4.210 8 C 0.386 3.614 9 O -0.380 6.380 10 N -0.359 5.359 11 C 0.018 3.982 12 H 0.133 0.867 13 C -0.191 4.191 14 C 0.019 3.981 15 H 0.130 0.870 16 N -0.382 5.382 17 C 0.320 3.680 18 O -0.392 6.392 19 C -0.306 4.306 20 S 0.166 5.834 21 C -0.685 4.685 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.202 1.202 27 H -0.207 1.207 28 H -0.197 1.197 29 C -0.204 4.204 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.113 0.887 33 H 0.232 0.768 34 H 0.099 0.901 35 H 0.123 0.877 36 H 0.235 0.765 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.079 0.921 40 H 0.117 0.883 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.385 16.312 -15.080 27.022 hybrid contribution 0.207 -3.871 -0.606 3.924 sum -15.178 12.441 -15.686 25.123 Atomic orbital electron populations 1.20353 0.84647 1.04527 1.04046 1.22394 0.98738 0.86877 0.99459 1.75003 0.95145 1.25897 1.17560 1.78241 1.16022 0.92133 1.15601 1.45503 1.08810 1.07088 1.48722 0.70124 1.22014 0.85156 0.96319 1.17557 1.16657 0.85944 0.82102 0.76664 1.90852 1.16361 1.81804 1.48974 1.45558 1.09115 1.06011 1.75199 1.21768 0.99987 0.78575 0.97900 0.86694 1.23769 0.97812 1.00338 0.97175 1.22478 0.95309 0.86349 0.93945 0.87007 1.45964 1.41717 1.07810 1.42673 1.20385 0.77990 0.91412 0.78211 1.90691 1.54967 1.42611 1.50907 1.23546 1.05539 0.95504 1.05964 1.85393 1.42877 1.10651 1.44492 1.22859 1.26563 0.91719 1.27332 0.90897 1.24998 0.94958 0.98882 0.94734 1.70009 1.23545 1.33613 1.23085 0.86161 0.78693 0.82919 0.77690 1.20249 1.20715 1.19685 1.23985 0.97645 1.01151 0.97586 0.89712 0.90110 0.88714 0.76799 0.90075 0.87721 0.76534 0.89135 0.89174 0.92135 0.88258 0.90372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 9.93 36.01 0.36 -0.19 16 2 C 0.07 0.60 7.29 -82.39 -0.60 0.00 16 3 N -0.27 -2.89 12.35 33.51 0.41 -2.48 16 4 N -0.04 -0.37 13.35 60.35 0.81 0.44 16 5 N -0.37 -2.41 6.97 33.31 0.23 -2.17 16 6 H 0.45 1.17 8.32 -190.33 -1.58 -0.41 16 7 C -0.08 -0.61 7.17 -82.34 -0.59 -1.20 16 8 C 0.60 4.82 7.81 -12.60 -0.10 4.73 16 9 O -0.51 -5.38 14.59 5.26 0.08 -5.31 16 10 N -0.71 -4.08 5.26 -54.15 -0.29 -4.36 16 11 C 0.12 0.76 4.32 -67.12 -0.29 0.47 16 12 H 0.12 0.76 7.46 -51.93 -0.39 0.38 16 13 C -0.15 -0.80 7.58 -25.92 -0.20 -1.00 16 14 C 0.13 1.10 4.12 -67.13 -0.28 0.82 16 15 H 0.11 1.13 7.47 -51.93 -0.39 0.75 16 16 N -0.73 -8.04 5.35 -53.03 -0.28 -8.32 16 17 C 0.53 9.01 7.85 -10.98 -0.09 8.93 16 18 O -0.52 -10.82 15.46 5.56 0.09 -10.74 16 19 C -0.15 -2.93 6.16 36.01 0.22 -2.70 16 20 S -0.06 -1.59 20.57 -107.50 -2.21 -3.81 16 21 C -0.54 -14.92 9.50 30.94 0.29 -14.63 16 22 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 23 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 24 N -0.87 -25.71 13.22 55.49 0.73 -24.97 16 25 Si 0.92 20.98 29.55 -169.99 -5.02 15.96 16 26 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 28 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 29 C -0.16 -1.31 7.68 -25.92 -0.20 -1.51 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.09 0.69 6.62 -51.93 -0.34 0.35 16 33 H 0.40 1.39 7.97 -40.82 -0.33 1.07 16 34 H 0.08 0.37 8.14 -51.92 -0.42 -0.06 16 35 H 0.10 0.43 8.12 -51.93 -0.42 0.01 16 36 H 0.40 3.24 8.73 -40.82 -0.36 2.89 16 37 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 38 H 0.09 1.56 8.14 -51.91 -0.42 1.13 16 39 H 0.27 7.40 8.31 -40.82 -0.34 7.07 16 40 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 LS Contribution 370.69 15.07 5.59 5.59 Total: -1.00 -37.45 370.69 -7.74 -45.19 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -6.31 Total: -0.71 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -1.56 Total: -4.31 kcal Atomic # 7 Polarization: -43.49 SS G_CDS: 1.62 Total: -41.87 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: 0.16 Total: -16.04 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -37.45 -7.74 -45.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720792179.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.127 kcal (2) G-P(sol) polarization free energy of solvation -37.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds