Wall clock time and date at job start Tue Mar 31 2020 22:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.33319 * 126.80906 * 2 1 4 4 N 1.28513 * 109.43307 * 180.25825 * 3 2 1 5 5 N 1.28713 * 110.64140 * 359.76634 * 4 3 2 6 6 H 0.97001 * 126.03488 * 179.97438 * 5 4 3 7 7 C 1.37000 * 126.81415 * 179.86611 * 2 1 3 8 8 C 1.47235 * 127.18941 * 0.02562 * 7 2 1 9 9 O 1.21617 * 120.00373 * 359.70955 * 8 7 2 10 10 N 1.34779 * 119.99931 * 179.70620 * 8 7 2 11 11 C 1.46497 * 119.99983 * 180.02562 * 10 8 7 12 12 H 1.08998 * 112.85041 * 23.79727 * 11 10 8 13 13 C 1.53780 * 113.61705 * 155.00414 * 11 10 8 14 14 C 1.53772 * 87.08584 * 89.19471 * 13 11 10 15 15 H 1.09002 * 113.61695 * 270.80097 * 14 13 11 16 16 N 1.46496 * 113.61598 * 139.98595 * 14 13 11 17 17 C 1.34777 * 120.00266 * 155.00257 * 16 14 13 18 18 O 1.21274 * 120.00135 * 0.27234 * 17 16 14 19 19 C 1.50706 * 119.99766 * 179.97438 * 17 16 14 20 20 S 1.81003 * 109.46851 * 179.97438 * 19 17 16 21 21 C 1.76196 * 99.99843 * 180.02562 * 20 19 17 22 22 H 1.07998 * 120.00031 * 359.97438 * 21 20 19 23 23 C 1.38802 * 119.99637 * 180.02562 * 21 20 19 24 24 N 1.31628 * 120.00514 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99567 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.46941 * 90.00284 * 25 23 21 27 27 H 1.48505 * 109.46872 * 209.99797 * 25 23 21 28 28 H 1.48493 * 109.47194 * 329.99916 * 25 23 21 29 29 C 1.53775 * 87.08153 * 25.43413 * 14 13 11 30 30 H 1.09001 * 109.47120 * 270.13154 * 1 2 3 31 31 H 1.08994 * 109.47266 * 30.13327 * 1 2 3 32 32 H 1.09004 * 109.47023 * 150.13607 * 1 2 3 33 33 H 0.97004 * 120.00002 * 359.97438 * 10 8 7 34 34 H 1.09008 * 113.61250 * 334.64019 * 13 11 10 35 35 H 1.09001 * 113.61649 * 203.74950 * 13 11 10 36 36 H 0.96999 * 119.99691 * 334.99242 * 16 14 13 37 37 H 1.09000 * 109.47161 * 299.99737 * 19 17 16 38 38 H 1.09001 * 109.46740 * 59.99879 * 19 17 16 39 39 H 0.96995 * 120.00407 * 179.97438 * 24 23 21 40 40 H 1.09004 * 113.61935 * 89.11558 * 29 14 13 41 41 H 1.09009 * 113.61608 * 220.02215 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3058 1.0674 0.0000 4 7 3.5323 0.6836 -0.0055 5 7 3.6057 -0.6014 -0.0043 6 1 4.4213 -1.1264 -0.0079 7 6 2.3280 -1.0968 0.0026 8 6 1.9223 -2.5121 0.0053 9 8 0.7423 -2.8065 0.0109 10 7 2.8586 -3.4816 0.0017 11 6 2.4549 -4.8898 0.0039 12 1 1.4531 -5.0436 -0.3971 13 6 3.5101 -5.8342 -0.5956 14 6 4.0991 -5.9476 0.8203 15 1 4.8507 -5.1901 1.0426 16 7 4.5368 -7.3020 1.1670 17 6 5.4910 -7.4834 2.1014 18 8 5.9838 -6.5256 2.6587 19 6 5.9408 -8.8767 2.4584 20 16 7.2224 -8.7888 3.7335 21 6 7.5545 -10.5053 3.9524 22 1 7.0146 -11.2381 3.3712 23 6 8.5093 -10.9155 4.8725 24 7 9.1663 -10.0224 5.5820 25 14 8.8609 -12.7354 5.1051 26 1 9.9386 -13.1543 4.1733 27 1 9.2931 -12.9812 6.5044 28 1 7.6305 -13.5173 4.8225 29 6 2.6967 -5.5998 1.3465 30 1 -0.3633 0.0024 1.0277 31 1 -0.3633 0.8887 -0.5159 32 1 -0.3633 -0.8912 -0.5117 33 1 3.7998 -3.2468 -0.0031 34 1 4.1766 -5.3480 -1.3082 35 1 3.0956 -6.7692 -0.9724 36 1 4.1397 -8.0682 0.7242 37 1 5.0918 -9.4473 2.8349 38 1 6.3436 -9.3668 1.5720 39 1 9.8333 -10.3091 6.2252 40 1 2.0597 -6.4707 1.5008 41 1 2.7064 -4.9243 2.2020 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001720792179.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:10 Heat of formation + Delta-G solvation = 9.299787 kcal Electronic energy + Delta-G solvation = -25453.921453 eV Core-core repulsion = 21496.627464 eV Total energy + Delta-G solvation = -3957.293989 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.53434 -41.57025 -40.46641 -39.05264 -35.67870 -34.91851 -34.58717 -33.89226 -33.11336 -30.67285 -28.97560 -27.68752 -26.75411 -26.06090 -24.95176 -23.39563 -22.05879 -21.76536 -20.78580 -20.15477 -19.75312 -18.00307 -17.74878 -17.67143 -17.55661 -16.96159 -16.88088 -16.43664 -16.01412 -15.87415 -15.80095 -14.95601 -14.86482 -14.58515 -14.52895 -14.05388 -13.94466 -13.70942 -13.53415 -13.33932 -13.20879 -13.16794 -12.99507 -12.89594 -12.59990 -12.32557 -11.96258 -11.78959 -11.71654 -11.59449 -11.36140 -11.14692 -10.91381 -10.55267 -10.27567 -10.24533 -9.99215 -8.66617 -8.35306 -6.12965 -0.29934 1.07364 1.27769 1.34162 1.42053 1.47765 1.57805 1.60656 1.75919 1.84644 2.26276 2.33939 2.99088 3.13515 3.31532 3.37049 3.41822 3.52772 3.70001 3.86952 3.90479 3.97116 4.04197 4.32571 4.51919 4.54935 4.58048 4.73459 4.74421 4.76359 4.81127 4.92178 4.97625 5.00966 5.26086 5.33464 5.41629 5.57004 5.59937 6.16725 6.19284 6.54213 6.81934 7.06420 7.08959 7.27240 8.73720 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.027110 B = 0.001757 C = 0.001689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.596440 B =15936.299802 C =16574.606145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.051 3.949 3 N -0.297 5.297 4 N -0.056 5.056 5 N -0.351 5.351 6 H 0.468 0.532 7 C -0.074 4.074 8 C 0.607 3.393 9 O -0.533 6.533 10 N -0.697 5.697 11 C 0.129 3.871 12 H 0.119 0.881 13 C -0.127 4.127 14 C 0.110 3.890 15 H 0.097 0.903 16 N -0.701 5.701 17 C 0.535 3.465 18 O -0.566 6.566 19 C -0.132 4.132 20 S -0.154 6.154 21 C -0.546 4.546 22 H 0.083 0.917 23 C 0.013 3.987 24 N -0.911 5.911 25 Si 0.997 3.003 26 H -0.268 1.268 27 H -0.279 1.279 28 H -0.258 1.258 29 C -0.164 4.164 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.410 0.590 34 H 0.097 0.903 35 H 0.128 0.872 36 H 0.419 0.581 37 H 0.108 0.892 38 H 0.111 0.889 39 H 0.271 0.729 40 H 0.108 0.892 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.275 11.720 -18.175 27.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.090 4.090 3 N -0.163 5.163 4 N -0.037 5.037 5 N -0.082 5.082 6 H 0.318 0.682 7 C -0.209 4.209 8 C 0.391 3.609 9 O -0.408 6.408 10 N -0.348 5.348 11 C 0.024 3.976 12 H 0.137 0.863 13 C -0.166 4.166 14 C 0.005 3.995 15 H 0.115 0.885 16 N -0.354 5.354 17 C 0.321 3.679 18 O -0.445 6.445 19 C -0.283 4.283 20 S 0.073 5.927 21 C -0.694 4.694 22 H 0.101 0.899 23 C -0.192 4.192 24 N -0.548 5.548 25 Si 0.819 3.181 26 H -0.193 1.193 27 H -0.205 1.205 28 H -0.182 1.182 29 C -0.204 4.204 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.246 0.754 34 H 0.116 0.884 35 H 0.146 0.854 36 H 0.257 0.743 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.080 0.920 40 H 0.127 0.873 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.497 14.481 -17.148 27.855 hybrid contribution 0.472 -3.271 -0.042 3.305 sum -16.026 11.210 -17.190 26.038 Atomic orbital electron populations 1.20386 0.83572 1.04892 1.04438 1.22790 0.99709 0.86950 0.99551 1.74974 0.95668 1.26925 1.18748 1.78173 1.15865 0.93237 1.16467 1.45477 1.09221 1.06450 1.47025 0.68184 1.22006 0.85402 0.96223 1.17232 1.16607 0.85776 0.82206 0.76340 1.90843 1.17475 1.82099 1.50382 1.45488 1.09518 1.05720 1.74069 1.21727 1.00671 0.78500 0.96738 0.86323 1.23706 0.96834 1.01063 0.94959 1.22762 0.95247 0.84474 0.96999 0.88529 1.45712 1.39416 1.09805 1.40449 1.20064 0.78940 0.89824 0.79081 1.90682 1.57133 1.43512 1.53129 1.23401 1.03354 0.97690 1.03863 1.85561 1.46905 1.11595 1.48591 1.23210 1.26732 0.91947 1.27494 0.89864 1.26118 0.94609 1.04199 0.94248 1.70176 1.24399 1.36214 1.23990 0.84967 0.79046 0.76379 0.77683 1.19291 1.20452 1.18177 1.24003 0.97161 1.01415 0.97810 0.89270 0.89105 0.88913 0.75387 0.88424 0.85379 0.74348 0.87332 0.87099 0.92033 0.87340 0.92456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.03 9.93 71.24 0.71 -0.32 16 2 C 0.05 0.92 7.29 42.04 0.31 1.22 16 3 N -0.30 -6.37 12.35 -47.88 -0.59 -6.96 16 4 N -0.06 -1.05 13.35 37.02 0.49 -0.56 16 5 N -0.35 -4.20 6.97 -48.53 -0.34 -4.53 16 6 H 0.47 1.78 8.32 -219.90 -1.83 -0.05 16 7 C -0.07 -1.11 7.17 40.41 0.29 -0.82 16 8 C 0.61 8.88 7.81 86.61 0.68 9.55 16 9 O -0.53 -10.70 14.59 -4.08 -0.06 -10.76 16 10 N -0.70 -6.60 5.26 -443.49 -2.33 -8.93 16 11 C 0.13 1.24 4.32 45.52 0.20 1.44 16 12 H 0.12 1.21 7.46 -2.39 -0.02 1.19 16 13 C -0.13 -0.84 7.58 31.12 0.24 -0.61 16 14 C 0.11 1.68 4.12 45.51 0.19 1.86 16 15 H 0.10 1.84 7.47 -2.39 -0.02 1.82 16 16 N -0.70 -13.66 5.35 -440.07 -2.36 -16.01 16 17 C 0.53 17.52 7.85 87.66 0.69 18.21 16 18 O -0.57 -23.99 15.46 -3.01 -0.05 -24.04 16 19 C -0.13 -4.82 6.16 71.24 0.44 -4.38 16 20 S -0.15 -8.24 20.57 -56.49 -1.16 -9.41 16 21 C -0.55 -30.39 9.50 67.96 0.65 -29.74 16 22 H 0.08 4.28 7.80 -2.91 -0.02 4.25 16 23 C 0.01 0.73 5.49 84.86 0.47 1.19 16 24 N -0.91 -55.14 13.22 21.65 0.29 -54.85 16 25 Si 1.00 42.67 29.55 68.60 2.03 44.69 16 26 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 27 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 28 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 29 C -0.16 -2.30 7.68 31.12 0.24 -2.06 16 30 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.09 1.32 6.62 -2.38 -0.02 1.30 16 33 H 0.41 1.97 7.97 -92.71 -0.74 1.23 16 34 H 0.10 0.44 8.14 -2.38 -0.02 0.42 16 35 H 0.13 0.37 8.12 -2.39 -0.02 0.35 16 36 H 0.42 5.16 8.73 -92.71 -0.81 4.35 16 37 H 0.11 3.57 8.14 -2.39 -0.02 3.56 16 38 H 0.11 3.59 8.14 -2.39 -0.02 3.57 16 39 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 40 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.06 1.06 8.14 -2.38 -0.02 1.05 16 Total: -1.00 -84.52 370.69 -1.26 -85.78 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -2.26 Total: 10.02 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: 5.08 Total: -4.45 kcal Atomic # 7 Polarization: -87.00 SS G_CDS: -4.84 Total: -91.84 kcal Atomic # 8 Polarization: -34.69 SS G_CDS: -0.11 Total: -34.80 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.69 kcal Atomic # 16 Polarization: -8.24 SS G_CDS: -1.16 Total: -9.41 kcal Total: -84.52 -1.26 -85.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720792179.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.081 kcal (2) G-P(sol) polarization free energy of solvation -84.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds