Wall clock time and date at job start Tue Mar 31 2020 22:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86798 * 120.00092 * 2 1 4 4 H 1.48504 * 109.46763 * 270.00039 * 3 2 1 5 5 H 1.48494 * 109.47135 * 29.99592 * 3 2 1 6 6 H 1.48498 * 109.47291 * 150.00153 * 3 2 1 7 7 C 1.38804 * 119.99669 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00176 * 359.97438 * 7 2 1 9 9 S 1.76198 * 119.99724 * 180.02562 * 7 2 1 10 10 C 1.80995 * 100.00117 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47569 * 179.97438 * 10 9 7 12 12 O 1.21287 * 119.99431 * 359.72296 * 11 10 9 13 13 N 1.34773 * 120.00327 * 179.97438 * 11 10 9 14 14 C 1.46497 * 119.99941 * 179.72665 * 13 11 10 15 15 C 1.53002 * 109.47015 * 175.02941 * 14 13 11 16 16 H 1.09000 * 109.87159 * 306.59505 * 15 14 13 17 17 C 1.54324 * 109.88665 * 67.60936 * 15 14 13 18 18 C 1.55397 * 102.82822 * 141.51812 * 17 15 14 19 19 C 1.54913 * 101.66747 * 324.66561 * 18 17 15 20 20 N 1.47017 * 109.88249 * 185.58436 * 15 14 13 21 21 C 1.34778 * 125.65459 * 61.59971 * 20 15 14 22 22 O 1.21557 * 119.99391 * 5.21843 * 21 20 15 23 23 C 1.47869 * 120.00434 * 185.21685 * 21 20 15 24 24 N 1.34545 * 126.04858 * 180.02562 * 23 21 20 25 25 C 1.30874 * 107.26998 * 180.02562 * 24 23 21 26 26 N 1.34585 * 107.62280 * 359.97438 * 25 24 23 27 27 H 0.97004 * 125.74805 * 179.97438 * 26 25 24 28 28 N 1.28851 * 108.50515 * 359.73869 * 26 25 24 29 29 H 0.97003 * 119.99865 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.47679 * 59.99271 * 10 9 7 31 31 H 1.08997 * 109.47082 * 299.99951 * 10 9 7 32 32 H 0.96998 * 119.99867 * 359.72342 * 13 11 10 33 33 H 1.09005 * 109.46959 * 295.02448 * 14 13 11 34 34 H 1.08990 * 109.47438 * 55.02862 * 14 13 11 35 35 H 1.09000 * 110.72512 * 259.97626 * 17 15 14 36 36 H 1.09000 * 110.71587 * 23.24910 * 17 15 14 37 37 H 1.09006 * 111.03954 * 206.53268 * 18 17 15 38 38 H 1.08998 * 110.89213 * 82.73616 * 18 17 15 39 39 H 1.08999 * 110.36511 * 278.08518 * 19 18 17 40 40 H 1.09005 * 110.36793 * 155.76373 * 19 18 17 41 41 H 1.07998 * 126.18640 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.6999 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 16 3.7722 -1.2021 0.0001 10 6 4.0866 -2.9846 -0.0001 11 6 5.5730 -3.2327 -0.0002 12 8 6.3440 -2.2964 -0.0052 13 7 6.0456 -4.4948 0.0001 14 6 7.4906 -4.7359 -0.0061 15 6 7.7577 -6.2371 0.1206 16 1 7.2363 -6.6340 0.9916 17 6 7.2799 -6.9647 -1.1537 18 6 8.3776 -8.0438 -1.3670 19 6 9.6487 -7.2954 -0.8937 20 7 9.2022 -6.4788 0.2496 21 6 9.9882 -6.0278 1.2472 22 8 9.4957 -5.4403 2.1906 23 6 11.4495 -6.2476 1.1943 24 7 12.3436 -5.8520 2.1185 25 6 13.5249 -6.2344 1.7049 26 7 13.3599 -6.8655 0.5277 27 1 14.0667 -7.2551 -0.0105 28 7 12.1043 -6.8694 0.2383 29 1 -0.4850 0.8401 -0.0004 30 1 3.6439 -3.4315 -0.8903 31 1 3.6433 -3.4318 0.8896 32 1 5.4290 -5.2436 0.0044 33 1 7.9162 -4.3687 -0.9400 34 1 7.9498 -4.2131 0.8328 35 1 6.3067 -7.4280 -0.9914 36 1 7.2451 -6.2782 -1.9996 37 1 8.4557 -8.3201 -2.4185 38 1 8.1868 -8.9201 -0.7475 39 1 10.0313 -6.6567 -1.6897 40 1 10.4118 -8.0065 -0.5770 41 1 14.4625 -6.0735 2.2162 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001721177423.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:20 Heat of formation + Delta-G solvation = -3.492091 kcal Electronic energy + Delta-G solvation = -26119.131292 eV Core-core repulsion = 22161.282606 eV Total energy + Delta-G solvation = -3957.848686 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.50917 -41.45390 -40.48315 -38.67005 -35.91452 -34.66761 -34.49469 -33.41473 -32.13085 -31.83103 -30.01093 -27.86086 -26.66572 -25.83356 -23.98876 -23.34835 -22.18300 -21.77386 -20.64866 -19.89488 -19.42549 -18.48216 -18.06381 -17.82346 -17.33950 -17.11985 -16.88782 -16.69207 -16.13378 -15.79627 -15.62009 -15.43963 -15.07986 -14.93076 -14.71408 -14.23235 -14.03048 -13.92947 -13.52806 -13.34732 -13.28816 -13.07743 -12.99927 -12.66764 -12.07923 -11.99415 -11.87133 -11.82817 -11.72274 -11.56928 -11.41487 -11.16953 -11.09836 -10.78695 -10.53029 -10.24277 -9.90103 -9.00103 -8.51371 -6.22021 0.18409 0.96125 1.10212 1.30518 1.32768 1.48177 1.52720 1.57390 1.90524 2.14466 2.24024 2.28961 2.72334 2.86714 3.00017 3.40338 3.49904 3.57160 3.76087 3.87055 3.99640 4.06356 4.22367 4.23490 4.36675 4.46498 4.62742 4.67130 4.78808 4.84276 4.94381 4.97899 5.11744 5.18050 5.24171 5.34600 5.35110 5.71446 5.92767 6.12026 6.19243 6.41188 6.74743 6.94053 7.03927 7.15494 8.60803 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.021949 B = 0.002132 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.365995 B =13132.383535 C =14013.120568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.046 3.954 3 Si 0.913 3.087 4 H -0.261 1.261 5 H -0.259 1.259 6 H -0.241 1.241 7 C -0.526 4.526 8 H 0.066 0.934 9 S -0.182 6.182 10 C -0.107 4.107 11 C 0.534 3.466 12 O -0.566 6.566 13 N -0.703 5.703 14 C 0.118 3.882 15 C 0.132 3.868 16 H 0.087 0.913 17 C -0.125 4.125 18 C -0.121 4.121 19 C 0.098 3.902 20 N -0.596 5.596 21 C 0.615 3.385 22 O -0.556 6.556 23 C 0.124 3.876 24 N -0.521 5.521 25 C 0.220 3.780 26 N -0.377 5.377 27 H 0.474 0.526 28 N -0.262 5.262 29 H 0.277 0.723 30 H 0.122 0.878 31 H 0.115 0.885 32 H 0.420 0.580 33 H 0.064 0.936 34 H 0.039 0.961 35 H 0.113 0.887 36 H 0.086 0.914 37 H 0.113 0.887 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.096 0.904 41 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.302 -25.870 -5.145 40.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.160 4.160 3 Si 0.735 3.265 4 H -0.186 1.186 5 H -0.183 1.183 6 H -0.165 1.165 7 C -0.673 4.673 8 H 0.084 0.916 9 S 0.044 5.956 10 C -0.258 4.258 11 C 0.320 3.680 12 O -0.445 6.445 13 N -0.358 5.358 14 C -0.007 4.007 15 C 0.028 3.972 16 H 0.105 0.895 17 C -0.162 4.162 18 C -0.159 4.159 19 C -0.023 4.023 20 N -0.330 5.330 21 C 0.401 3.599 22 O -0.431 6.431 23 C -0.155 4.155 24 N -0.246 5.246 25 C -0.077 4.077 26 N -0.104 5.104 27 H 0.326 0.674 28 N -0.106 5.106 29 H 0.086 0.914 30 H 0.140 0.860 31 H 0.133 0.867 32 H 0.258 0.742 33 H 0.083 0.917 34 H 0.058 0.942 35 H 0.131 0.869 36 H 0.105 0.895 37 H 0.131 0.869 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.114 0.886 41 H 0.298 0.702 Dipole moment (debyes) X Y Z Total from point charges 30.692 -23.947 -4.740 39.216 hybrid contribution -0.633 -0.404 0.142 0.765 sum 30.058 -24.351 -4.597 38.956 Atomic orbital electron populations 1.70011 1.07151 1.28969 1.49169 1.25534 0.95287 1.02145 0.92993 0.85888 0.80584 0.79812 0.80223 1.18567 1.18294 1.16492 1.22440 0.89973 0.96796 1.58127 0.91612 1.84823 1.06754 1.06394 1.97603 1.23240 0.95086 0.99563 1.07892 1.20088 0.89721 0.83138 0.75100 1.90703 1.59577 1.44003 1.50186 1.45445 1.07684 1.07145 1.75512 1.21546 0.81002 0.96911 1.01285 1.21862 0.80748 0.92810 1.01780 0.89501 1.22903 1.00899 0.98003 0.94424 1.22871 0.91710 0.97245 1.04028 1.22749 0.98786 0.93917 0.86825 1.48231 1.08615 1.52104 1.24056 1.16376 0.83175 0.78709 0.81689 1.90850 1.74559 1.43133 1.34542 1.23341 0.95835 1.04406 0.91935 1.71257 1.00376 1.23934 1.29050 1.27634 0.99756 0.93657 0.86610 1.45240 1.06015 1.40402 1.18703 0.67373 1.74249 0.92759 1.19762 1.23839 0.91367 0.85966 0.86685 0.74185 0.91734 0.94215 0.86885 0.89535 0.86865 0.89528 0.90483 0.88614 0.70236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.33 13.97 21.65 0.30 -56.03 16 2 C 0.05 2.74 5.50 84.86 0.47 3.21 16 3 Si 0.91 46.22 27.74 68.60 1.90 48.13 16 4 H -0.26 -12.83 7.11 99.48 0.71 -12.13 16 5 H -0.26 -12.27 7.11 99.48 0.71 -11.56 16 6 H -0.24 -12.36 6.74 99.48 0.67 -11.69 16 7 C -0.53 -31.11 10.04 67.96 0.68 -30.42 16 8 H 0.07 4.06 8.03 -2.91 -0.02 4.03 16 9 S -0.18 -9.55 18.55 -56.49 -1.05 -10.60 16 10 C -0.11 -4.15 6.16 71.24 0.44 -3.71 16 11 C 0.53 19.88 7.85 87.66 0.69 20.57 16 12 O -0.57 -26.75 15.86 -3.05 -0.05 -26.80 16 13 N -0.70 -18.42 5.41 -463.06 -2.51 -20.93 16 14 C 0.12 3.16 5.08 86.38 0.44 3.60 16 15 C 0.13 2.43 2.91 45.34 0.13 2.57 16 16 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 17 C -0.12 -1.18 6.14 31.87 0.20 -0.99 16 18 C -0.12 -0.75 7.09 32.07 0.23 -0.53 16 19 C 0.10 1.14 5.97 86.86 0.52 1.66 16 20 N -0.60 -12.07 3.07 -791.38 -2.43 -14.50 16 21 C 0.62 17.31 7.58 86.79 0.66 17.97 16 22 O -0.56 -20.98 16.27 -3.89 -0.06 -21.04 16 23 C 0.12 2.85 7.80 137.13 1.07 3.92 16 24 N -0.52 -11.52 11.41 -193.03 -2.20 -13.72 16 25 C 0.22 1.68 13.14 180.30 2.37 4.05 16 26 N -0.38 -1.85 6.93 -60.38 -0.42 -2.27 16 27 H 0.47 -2.52 8.96 -219.79 -1.97 -4.49 16 28 N -0.26 -3.66 9.53 -52.44 -0.50 -4.16 16 29 H 0.28 15.77 8.31 -92.71 -0.77 15.00 16 30 H 0.12 4.17 8.14 -2.40 -0.02 4.15 16 31 H 0.11 4.11 8.14 -2.40 -0.02 4.09 16 32 H 0.42 7.44 8.28 -92.71 -0.77 6.68 16 33 H 0.06 1.76 8.01 -2.38 -0.02 1.74 16 34 H 0.04 1.44 6.87 -2.39 -0.02 1.42 16 35 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.09 0.87 7.76 -2.39 -0.02 0.85 16 37 H 0.11 0.24 8.14 -2.38 -0.02 0.22 16 38 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.10 1.02 6.51 -2.38 -0.02 1.00 16 41 H 0.28 -1.29 8.06 -2.91 -0.02 -1.32 16 Total: -1.00 -97.71 362.71 -0.80 -98.51 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -1.68 Total: 1.52 kcal Atomic # 6 Polarization: 14.01 SS G_CDS: 7.88 Total: 21.89 kcal Atomic # 7 Polarization: -103.86 SS G_CDS: -7.75 Total: -111.61 kcal Atomic # 8 Polarization: -47.73 SS G_CDS: -0.11 Total: -47.84 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 1.90 Total: 48.13 kcal Atomic # 16 Polarization: -9.55 SS G_CDS: -1.05 Total: -10.60 kcal Total: -97.71 -0.80 -98.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721177423.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.016 kcal (2) G-P(sol) polarization free energy of solvation -97.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds