Wall clock time and date at job start Tue Mar 31 2020 22:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86804 * 119.99445 * 2 1 4 4 H 1.48501 * 109.46914 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47294 * 300.00066 * 3 2 1 6 6 H 1.48508 * 109.47007 * 60.00103 * 3 2 1 7 7 C 1.38792 * 120.00679 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00161 * 179.97438 * 7 2 1 9 9 S 1.76205 * 119.99559 * 0.02562 * 7 2 1 10 10 C 1.81009 * 99.99650 * 179.97438 * 9 7 2 11 11 C 1.50695 * 109.46952 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99931 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00196 * 180.02562 * 11 10 9 14 14 C 1.46503 * 120.00103 * 179.72604 * 13 11 10 15 15 C 1.53005 * 109.46982 * 174.97001 * 14 13 11 16 16 H 1.09003 * 109.87429 * 54.92293 * 15 14 13 17 17 C 1.54327 * 109.88030 * 293.90729 * 15 14 13 18 18 C 1.55403 * 102.82697 * 218.48400 * 17 15 14 19 19 C 1.54900 * 101.66652 * 35.33735 * 18 17 15 20 20 N 1.47021 * 109.88156 * 175.94313 * 15 14 13 21 21 C 1.34776 * 125.64596 * 298.38930 * 20 15 14 22 22 O 1.21554 * 120.00181 * 4.82427 * 21 20 15 23 23 C 1.47865 * 119.99962 * 184.82204 * 21 20 15 24 24 N 1.34552 * 126.04909 * 179.97438 * 23 21 20 25 25 C 1.30875 * 107.27011 * 179.97438 * 24 23 21 26 26 N 1.34578 * 107.62366 * 0.02562 * 25 24 23 27 27 H 0.97005 * 125.74778 * 179.97438 * 26 25 24 28 28 N 1.28852 * 108.50697 * 359.72632 * 26 25 24 29 29 H 0.97001 * 120.01148 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.46944 * 59.99815 * 10 9 7 31 31 H 1.08997 * 109.46641 * 299.99469 * 10 9 7 32 32 H 0.97001 * 119.99555 * 359.97438 * 13 11 10 33 33 H 1.09002 * 109.46970 * 294.96627 * 14 13 11 34 34 H 1.08992 * 109.47306 * 54.96826 * 14 13 11 35 35 H 1.08998 * 110.72115 * 336.75811 * 17 15 14 36 36 H 1.09004 * 110.71905 * 100.02623 * 17 15 14 37 37 H 1.09003 * 110.88708 * 277.26528 * 18 17 15 38 38 H 1.08995 * 111.06890 * 153.49266 * 18 17 15 39 39 H 1.09005 * 110.37136 * 204.23481 * 19 18 17 40 40 H 1.08997 * 110.46156 * 81.96261 * 19 18 17 41 41 H 1.07996 * 126.18644 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7102 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8913 2.3965 1.2126 7 6 2.0104 -1.2019 -0.0005 8 1 3.0904 -1.2018 -0.0010 9 16 1.1294 -2.7279 -0.0019 10 6 2.5162 -3.8913 -0.0029 11 6 1.9878 -5.3026 -0.0036 12 8 0.7915 -5.5022 -0.0029 13 7 2.8446 -6.3429 -0.0039 14 6 2.3309 -7.7149 0.0016 15 6 3.4974 -8.6967 -0.1264 16 1 4.2297 -8.5065 0.6583 17 6 4.1611 -8.5454 -1.5115 18 6 4.5010 -10.0129 -1.8934 19 6 3.3010 -10.7807 -1.2853 20 7 3.0024 -10.0773 -0.0246 21 6 2.3784 -10.6112 1.0441 22 8 2.1052 -9.9122 2.0002 23 6 2.0261 -12.0472 1.0534 24 7 1.4060 -12.7039 2.0506 25 6 1.2773 -13.9507 1.6739 26 7 1.8177 -14.0633 0.4465 27 1 1.8640 -14.8767 -0.0799 28 7 2.2586 -12.9074 0.0861 29 1 -0.4852 0.8400 0.0004 30 1 3.1247 -3.7319 0.8871 31 1 3.1246 -3.7303 -0.8928 32 1 3.8014 -6.1832 -0.0041 33 1 1.8006 -7.9006 0.9356 34 1 1.6481 -7.8506 -0.8370 35 1 3.4634 -8.1125 -2.2283 36 1 5.0668 -7.9429 -1.4413 37 1 5.4386 -10.3267 -1.4346 38 1 4.5370 -10.1378 -2.9755 39 1 3.5751 -11.8168 -1.0860 40 1 2.4425 -10.7386 -1.9557 41 1 0.8202 -14.7454 2.2447 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001721177424.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:23 Heat of formation + Delta-G solvation = 30.584223 kcal Electronic energy + Delta-G solvation = -26048.068802 eV Core-core repulsion = 22091.697775 eV Total energy + Delta-G solvation = -3956.371027 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.95252 -40.51668 -38.93250 -37.70888 -34.54206 -33.88464 -32.66321 -32.38162 -31.40349 -30.61216 -28.67113 -25.92081 -25.47454 -24.73943 -23.48244 -22.66009 -21.38692 -20.41574 -19.83285 -18.87376 -17.90115 -17.53578 -17.12205 -16.67826 -16.19905 -15.65484 -15.38387 -15.14097 -15.03557 -14.76204 -14.62444 -14.00619 -13.90509 -13.63375 -13.20686 -13.04061 -12.93220 -12.71252 -12.48424 -12.30172 -11.78467 -11.52230 -11.20829 -11.16788 -11.13066 -11.03239 -10.96994 -10.87099 -10.71839 -10.45376 -10.22796 -9.76075 -9.35016 -9.03331 -9.02182 -8.76943 -8.16576 -6.44125 -6.16914 -3.86958 0.87077 1.67953 2.01176 2.36410 2.99673 3.13664 3.20244 3.25049 3.32199 3.37767 3.62095 3.85535 3.98465 4.14731 4.18002 4.24846 4.43008 4.49688 4.77506 4.93152 5.03288 5.18071 5.23490 5.28947 5.41918 5.43960 5.49842 5.53354 5.68233 5.69811 5.77894 5.81385 5.92229 5.97433 6.15104 6.20302 6.22758 6.67293 7.02008 7.43073 7.64456 7.77603 7.82674 8.40166 8.71173 9.28299 10.90550 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.026745 B = 0.001974 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.680432 B =14183.531524 C =14853.749843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.072 3.928 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.152 4.152 11 C 0.532 3.468 12 O -0.516 6.516 13 N -0.735 5.735 14 C 0.109 3.891 15 C 0.132 3.868 16 H 0.087 0.913 17 C -0.130 4.130 18 C -0.133 4.133 19 C 0.096 3.904 20 N -0.599 5.599 21 C 0.625 3.375 22 O -0.496 6.496 23 C 0.160 3.840 24 N -0.460 5.460 25 C 0.199 3.801 26 N -0.401 5.401 27 H 0.452 0.548 28 N -0.275 5.275 29 H 0.267 0.733 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.397 0.603 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.072 0.928 41 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.167 -33.354 -4.290 35.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.137 4.137 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.682 4.682 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.302 4.302 11 C 0.318 3.682 12 O -0.389 6.389 13 N -0.390 5.390 14 C -0.016 4.016 15 C 0.029 3.971 16 H 0.105 0.895 17 C -0.168 4.168 18 C -0.171 4.171 19 C -0.027 4.027 20 N -0.335 5.335 21 C 0.409 3.591 22 O -0.366 6.366 23 C -0.120 4.120 24 N -0.184 5.184 25 C -0.099 4.099 26 N -0.124 5.124 27 H 0.298 0.702 28 N -0.117 5.117 29 H 0.077 0.923 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.230 0.770 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.106 0.894 39 H 0.116 0.884 40 H 0.090 0.910 41 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 8.977 -32.750 -3.846 34.175 hybrid contribution 2.246 0.374 -0.233 2.288 sum 11.223 -32.376 -4.079 34.508 Atomic orbital electron populations 1.70029 1.05943 1.27297 1.47026 1.24998 0.95026 0.99032 0.94625 0.86116 0.79576 0.81924 0.77855 1.19626 1.20618 1.20589 1.22914 0.94950 0.91674 1.58684 0.90868 1.85440 1.04999 0.96294 1.96694 1.23518 1.06510 0.95296 1.04921 1.20284 0.86511 0.86171 0.75229 1.90713 1.15394 1.85532 1.47294 1.45823 1.09838 1.05149 1.78174 1.21628 0.95612 0.80551 1.03793 1.21796 0.95640 0.80702 0.98999 0.89519 1.22850 1.01528 0.97330 0.95103 1.22836 0.97920 0.94731 1.01582 1.22620 0.97857 0.97772 0.84408 1.48074 1.58169 1.12369 1.14897 1.15898 0.78150 0.82965 0.82118 1.90901 1.51795 1.59685 1.34181 1.23710 1.03297 0.96264 0.88752 1.71348 1.16774 1.02882 1.27390 1.26791 0.99570 0.96851 0.86642 1.45224 1.41668 1.09866 1.15624 0.70172 1.74333 1.19824 0.92330 1.25225 0.92270 0.89176 0.89213 0.76959 0.90076 0.91214 0.89588 0.89317 0.90466 0.89440 0.88414 0.90998 0.75199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.66 13.22 55.49 0.73 -25.92 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.76 29.55 -169.99 -5.02 16.74 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.53 -15.50 9.50 30.94 0.29 -15.20 16 8 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 9 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 10 C -0.15 -3.16 6.16 36.00 0.22 -2.94 16 11 C 0.53 10.54 7.85 -10.99 -0.09 10.46 16 12 O -0.52 -12.56 15.86 5.56 0.09 -12.47 16 13 N -0.73 -10.56 5.35 -60.29 -0.32 -10.88 16 14 C 0.11 1.53 5.06 -4.04 -0.02 1.51 16 15 C 0.13 1.33 2.95 -66.95 -0.20 1.13 16 16 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 17 C -0.13 -0.90 6.20 -24.76 -0.15 -1.06 16 18 C -0.13 -0.71 7.09 -24.45 -0.17 -0.88 16 19 C 0.10 0.69 6.31 -2.54 -0.02 0.67 16 20 N -0.60 -6.30 3.06 -164.11 -0.50 -6.80 16 21 C 0.63 8.43 7.68 -12.32 -0.09 8.34 16 22 O -0.50 -8.66 15.90 5.32 0.08 -8.57 16 23 C 0.16 1.83 7.81 -156.35 -1.22 0.61 16 24 N -0.46 -5.07 11.41 -12.37 -0.14 -5.21 16 25 C 0.20 0.98 13.14 -90.48 -1.19 -0.21 16 26 N -0.40 -1.51 6.93 29.56 0.20 -1.30 16 27 H 0.45 -0.41 8.96 -190.20 -1.71 -2.11 16 28 N -0.28 -2.13 9.30 32.07 0.30 -1.83 16 29 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 30 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 31 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 32 H 0.40 4.28 8.38 -40.82 -0.34 3.93 16 33 H 0.08 1.42 6.58 -51.93 -0.34 1.07 16 34 H 0.07 1.04 8.04 -51.93 -0.42 0.62 16 35 H 0.09 0.67 7.79 -51.93 -0.40 0.26 16 36 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.10 0.65 5.91 -51.93 -0.31 0.34 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.23 -0.08 8.06 -52.49 -0.42 -0.51 16 LS Contribution 364.54 15.07 5.49 5.49 Total: -1.00 -42.32 364.54 -10.48 -52.79 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -6.44 Total: -2.54 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: -2.73 Total: 4.43 kcal Atomic # 7 Polarization: -52.22 SS G_CDS: 0.27 Total: -51.95 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: 0.17 Total: -21.04 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -42.32 -10.48 -52.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721177424.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.378 kcal (2) G-P(sol) polarization free energy of solvation -42.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds