Wall clock time and date at job start Tue Mar 31 2020 22:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86804 * 119.99445 * 2 1 4 4 H 1.48501 * 109.46914 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47294 * 300.00066 * 3 2 1 6 6 H 1.48508 * 109.47007 * 60.00103 * 3 2 1 7 7 C 1.38792 * 120.00679 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00161 * 179.97438 * 7 2 1 9 9 S 1.76205 * 119.99559 * 0.02562 * 7 2 1 10 10 C 1.81009 * 99.99650 * 179.97438 * 9 7 2 11 11 C 1.50695 * 109.46952 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99931 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00196 * 180.02562 * 11 10 9 14 14 C 1.46503 * 120.00103 * 179.72604 * 13 11 10 15 15 C 1.53005 * 109.46982 * 174.97001 * 14 13 11 16 16 H 1.09003 * 109.87429 * 54.92293 * 15 14 13 17 17 C 1.54327 * 109.88030 * 293.90729 * 15 14 13 18 18 C 1.55403 * 102.82697 * 218.48400 * 17 15 14 19 19 C 1.54900 * 101.66652 * 35.33735 * 18 17 15 20 20 N 1.47021 * 109.88156 * 175.94313 * 15 14 13 21 21 C 1.34776 * 125.64596 * 298.38930 * 20 15 14 22 22 O 1.21554 * 120.00181 * 4.82427 * 21 20 15 23 23 C 1.47865 * 119.99962 * 184.82204 * 21 20 15 24 24 N 1.34552 * 126.04909 * 179.97438 * 23 21 20 25 25 C 1.30875 * 107.27011 * 179.97438 * 24 23 21 26 26 N 1.34578 * 107.62366 * 0.02562 * 25 24 23 27 27 H 0.97005 * 125.74778 * 179.97438 * 26 25 24 28 28 N 1.28852 * 108.50697 * 359.72632 * 26 25 24 29 29 H 0.97001 * 120.01148 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.46944 * 59.99815 * 10 9 7 31 31 H 1.08997 * 109.46641 * 299.99469 * 10 9 7 32 32 H 0.97001 * 119.99555 * 359.97438 * 13 11 10 33 33 H 1.09002 * 109.46970 * 294.96627 * 14 13 11 34 34 H 1.08992 * 109.47306 * 54.96826 * 14 13 11 35 35 H 1.08998 * 110.72115 * 336.75811 * 17 15 14 36 36 H 1.09004 * 110.71905 * 100.02623 * 17 15 14 37 37 H 1.09003 * 110.88708 * 277.26528 * 18 17 15 38 38 H 1.08995 * 111.06890 * 153.49266 * 18 17 15 39 39 H 1.09005 * 110.37136 * 204.23481 * 19 18 17 40 40 H 1.08997 * 110.46156 * 81.96261 * 19 18 17 41 41 H 1.07996 * 126.18644 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7102 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8913 2.3965 1.2126 7 6 2.0104 -1.2019 -0.0005 8 1 3.0904 -1.2018 -0.0010 9 16 1.1294 -2.7279 -0.0019 10 6 2.5162 -3.8913 -0.0029 11 6 1.9878 -5.3026 -0.0036 12 8 0.7915 -5.5022 -0.0029 13 7 2.8446 -6.3429 -0.0039 14 6 2.3309 -7.7149 0.0016 15 6 3.4974 -8.6967 -0.1264 16 1 4.2297 -8.5065 0.6583 17 6 4.1611 -8.5454 -1.5115 18 6 4.5010 -10.0129 -1.8934 19 6 3.3010 -10.7807 -1.2853 20 7 3.0024 -10.0773 -0.0246 21 6 2.3784 -10.6112 1.0441 22 8 2.1052 -9.9122 2.0002 23 6 2.0261 -12.0472 1.0534 24 7 1.4060 -12.7039 2.0506 25 6 1.2773 -13.9507 1.6739 26 7 1.8177 -14.0633 0.4465 27 1 1.8640 -14.8767 -0.0799 28 7 2.2586 -12.9074 0.0861 29 1 -0.4852 0.8400 0.0004 30 1 3.1247 -3.7319 0.8871 31 1 3.1246 -3.7303 -0.8928 32 1 3.8014 -6.1832 -0.0041 33 1 1.8006 -7.9006 0.9356 34 1 1.6481 -7.8506 -0.8370 35 1 3.4634 -8.1125 -2.2283 36 1 5.0668 -7.9429 -1.4413 37 1 5.4386 -10.3267 -1.4346 38 1 4.5370 -10.1378 -2.9755 39 1 3.5751 -11.8168 -1.0860 40 1 2.4425 -10.7386 -1.9557 41 1 0.8202 -14.7454 2.2447 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001721177424.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:22 Heat of formation + Delta-G solvation = -2.694493 kcal Electronic energy + Delta-G solvation = -26049.511875 eV Core-core repulsion = 22091.697775 eV Total energy + Delta-G solvation = -3957.814100 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.50720 -41.44498 -40.43890 -38.65581 -35.88761 -34.57866 -34.48934 -33.41234 -32.11403 -31.79370 -29.95850 -27.68734 -26.68088 -25.77163 -23.98568 -23.34246 -22.13390 -21.79620 -20.65765 -19.84913 -19.41807 -18.46436 -18.02132 -17.74401 -17.31958 -16.91779 -16.86991 -16.66647 -16.09515 -15.79641 -15.66454 -15.49278 -15.10736 -14.74172 -14.48589 -14.25324 -13.96209 -13.86505 -13.47785 -13.27835 -13.15457 -13.03303 -12.90216 -12.58896 -12.06035 -12.02978 -11.82478 -11.73929 -11.69007 -11.52956 -11.39958 -11.15320 -11.03660 -10.79094 -10.26346 -10.18648 -9.89459 -8.66986 -8.33849 -6.12514 0.18527 1.10726 1.21759 1.36544 1.42473 1.50147 1.58378 1.60208 1.91316 2.15179 2.27387 2.33507 3.00084 3.00259 3.32494 3.41198 3.51446 3.58480 3.75796 3.98410 3.99619 4.07967 4.22601 4.29958 4.38316 4.50860 4.61726 4.69732 4.78254 4.87634 4.95087 4.97406 5.11649 5.17912 5.27408 5.35055 5.37420 5.43033 5.94021 6.19788 6.21053 6.46260 6.75262 7.04600 7.07153 7.21650 8.75780 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.026745 B = 0.001974 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.680432 B =14183.531524 C =14853.749843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.010 3.990 3 Si 1.002 2.998 4 H -0.255 1.255 5 H -0.273 1.273 6 H -0.275 1.275 7 C -0.543 4.543 8 H 0.086 0.914 9 S -0.158 6.158 10 C -0.125 4.125 11 C 0.533 3.467 12 O -0.569 6.569 13 N -0.704 5.704 14 C 0.116 3.884 15 C 0.134 3.866 16 H 0.092 0.908 17 C -0.125 4.125 18 C -0.119 4.119 19 C 0.091 3.909 20 N -0.596 5.596 21 C 0.615 3.385 22 O -0.555 6.555 23 C 0.125 3.875 24 N -0.520 5.520 25 C 0.221 3.779 26 N -0.377 5.377 27 H 0.474 0.526 28 N -0.263 5.263 29 H 0.271 0.729 30 H 0.110 0.890 31 H 0.118 0.882 32 H 0.419 0.581 33 H 0.042 0.958 34 H 0.058 0.942 35 H 0.079 0.921 36 H 0.114 0.886 37 H 0.089 0.911 38 H 0.111 0.889 39 H 0.106 0.894 40 H 0.072 0.928 41 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.403 -35.111 -5.800 38.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.194 4.194 3 Si 0.823 3.177 4 H -0.178 1.178 5 H -0.199 1.199 6 H -0.201 1.201 7 C -0.691 4.691 8 H 0.104 0.896 9 S 0.069 5.931 10 C -0.276 4.276 11 C 0.319 3.681 12 O -0.448 6.448 13 N -0.359 5.359 14 C -0.009 4.009 15 C 0.030 3.970 16 H 0.110 0.890 17 C -0.162 4.162 18 C -0.157 4.157 19 C -0.030 4.030 20 N -0.330 5.330 21 C 0.400 3.600 22 O -0.430 6.430 23 C -0.154 4.154 24 N -0.246 5.246 25 C -0.076 4.076 26 N -0.103 5.103 27 H 0.326 0.674 28 N -0.107 5.107 29 H 0.080 0.920 30 H 0.129 0.871 31 H 0.136 0.864 32 H 0.257 0.743 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.098 0.902 36 H 0.132 0.868 37 H 0.108 0.892 38 H 0.129 0.871 39 H 0.124 0.876 40 H 0.090 0.910 41 H 0.298 0.702 Dipole moment (debyes) X Y Z Total from point charges 12.295 -34.590 -5.419 37.108 hybrid contribution 1.230 0.663 0.214 1.414 sum 13.525 -33.927 -5.204 36.893 Atomic orbital electron populations 1.70201 1.08064 1.28543 1.48144 1.26181 0.95997 1.03477 0.93777 0.84863 0.78656 0.76123 0.78015 1.17810 1.19855 1.20097 1.23242 0.95420 0.91760 1.58668 0.89634 1.85684 1.10811 0.99496 1.97064 1.23342 1.03490 0.93609 1.07187 1.20187 0.86146 0.86830 0.74957 1.90702 1.17765 1.86154 1.50142 1.45468 1.10425 1.04283 1.75687 1.21563 0.97192 0.80913 1.01241 1.21870 0.93878 0.79673 1.01584 0.89046 1.22884 1.01935 0.99076 0.92337 1.22852 0.97238 0.92670 1.02942 1.22859 0.98929 0.98348 0.82874 1.48228 1.56877 1.12634 1.15237 1.16387 0.77666 0.83953 0.81970 1.90847 1.54421 1.61314 1.36417 1.23334 1.05931 0.95852 0.90284 1.71261 1.18717 1.05592 1.28984 1.27637 0.97471 0.95999 0.86495 1.45253 1.39901 1.09586 1.15609 0.67372 1.74213 1.19253 0.93054 1.24179 0.92029 0.87133 0.86358 0.74297 0.93989 0.92373 0.90195 0.86807 0.89198 0.87073 0.87581 0.90981 0.70203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.37 13.22 21.65 0.29 -57.09 16 2 C 0.01 0.59 5.49 84.86 0.47 1.05 16 3 Si 1.00 44.35 29.55 68.60 2.03 46.38 16 4 H -0.25 -10.45 7.11 99.48 0.71 -9.74 16 5 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 6 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.54 -31.60 9.50 67.95 0.65 -30.95 16 8 H 0.09 4.59 7.80 -2.91 -0.02 4.56 16 9 S -0.16 -9.08 20.57 -56.49 -1.16 -10.24 16 10 C -0.13 -5.14 6.16 71.23 0.44 -4.70 16 11 C 0.53 21.37 7.85 87.66 0.69 22.06 16 12 O -0.57 -29.10 15.86 -3.04 -0.05 -29.15 16 13 N -0.70 -19.93 5.35 -463.06 -2.48 -22.40 16 14 C 0.12 3.38 5.06 86.38 0.44 3.82 16 15 C 0.13 2.62 2.95 45.34 0.13 2.76 16 16 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 17 C -0.12 -1.39 6.20 31.87 0.20 -1.20 16 18 C -0.12 -0.88 7.09 32.07 0.23 -0.65 16 19 C 0.09 1.17 6.31 86.85 0.55 1.71 16 20 N -0.60 -12.64 3.06 -791.41 -2.43 -15.07 16 21 C 0.61 17.65 7.68 86.79 0.67 18.32 16 22 O -0.56 -21.24 15.90 -3.88 -0.06 -21.30 16 23 C 0.13 2.92 7.81 137.12 1.07 3.99 16 24 N -0.52 -11.58 11.41 -193.04 -2.20 -13.78 16 25 C 0.22 1.71 13.14 180.30 2.37 4.07 16 26 N -0.38 -1.89 6.93 -60.38 -0.42 -2.31 16 27 H 0.47 -2.49 8.96 -219.79 -1.97 -4.46 16 28 N -0.26 -3.74 9.30 -52.44 -0.49 -4.22 16 29 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 30 H 0.11 4.11 8.14 -2.40 -0.02 4.09 16 31 H 0.12 4.20 8.14 -2.40 -0.02 4.18 16 32 H 0.42 8.13 8.38 -92.71 -0.78 7.35 16 33 H 0.04 1.59 6.58 -2.39 -0.02 1.58 16 34 H 0.06 1.83 8.04 -2.39 -0.02 1.81 16 35 H 0.08 1.05 7.79 -2.39 -0.02 1.03 16 36 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 39 H 0.11 1.20 5.91 -2.38 -0.01 1.19 16 40 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.28 -1.28 8.06 -2.91 -0.02 -1.31 16 Total: -1.00 -100.87 364.54 -0.73 -101.59 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -1.65 Total: 7.30 kcal Atomic # 6 Polarization: 12.39 SS G_CDS: 7.89 Total: 20.28 kcal Atomic # 7 Polarization: -107.15 SS G_CDS: -7.72 Total: -114.87 kcal Atomic # 8 Polarization: -50.34 SS G_CDS: -0.11 Total: -50.45 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Atomic # 16 Polarization: -9.08 SS G_CDS: -1.16 Total: -10.24 kcal Total: -100.87 -0.73 -101.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721177424.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.900 kcal (2) G-P(sol) polarization free energy of solvation -100.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds