Wall clock time and date at job start Tue Mar 31 2020 22:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86804 * 119.99534 * 2 1 4 4 H 1.48494 * 109.47050 * 269.99754 * 3 2 1 5 5 H 1.48496 * 109.47396 * 30.00003 * 3 2 1 6 6 H 1.48501 * 109.46807 * 150.00242 * 3 2 1 7 7 C 1.38794 * 120.00124 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00135 * 359.97438 * 7 2 1 9 9 S 1.76201 * 119.99691 * 180.02562 * 7 2 1 10 10 C 1.81001 * 99.99947 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47524 * 179.97438 * 10 9 7 12 12 O 1.21286 * 119.99580 * 359.97438 * 11 10 9 13 13 N 1.34772 * 120.00286 * 180.02562 * 11 10 9 14 14 C 1.47422 * 125.64710 * 5.12608 * 13 11 10 15 15 C 1.54915 * 104.83324 * 155.83524 * 14 13 11 16 16 C 1.55162 * 101.58203 * 37.00695 * 15 14 13 17 17 C 1.47026 * 125.64980 * 185.07958 * 13 11 10 18 18 H 1.08996 * 109.88409 * 300.67163 * 17 13 11 19 19 C 1.53006 * 109.87858 * 61.67815 * 17 13 11 20 20 N 1.46495 * 109.46901 * 185.39862 * 19 17 13 21 21 C 1.34780 * 119.99686 * 174.81171 * 20 19 17 22 22 O 1.21621 * 120.00093 * 0.27822 * 21 20 19 23 23 C 1.47231 * 119.99783 * 180.27152 * 21 20 19 24 24 C 1.37012 * 127.19034 * 179.68342 * 23 21 20 25 25 N 1.33320 * 106.37477 * 179.91112 * 24 23 21 26 26 N 1.28515 * 109.43700 * 0.36821 * 25 24 23 27 27 N 1.28709 * 110.64049 * 359.76504 * 26 25 24 28 28 H 0.97002 * 126.04242 * 179.97438 * 27 26 25 29 29 H 0.96991 * 120.00256 * 359.97438 * 1 2 3 30 30 H 1.09007 * 109.47333 * 59.99710 * 10 9 7 31 31 H 1.08997 * 109.47286 * 299.99928 * 10 9 7 32 32 H 1.08998 * 110.36708 * 274.67203 * 14 13 11 33 33 H 1.09002 * 110.36813 * 36.99826 * 14 13 11 34 34 H 1.08994 * 111.00717 * 155.07930 * 15 14 13 35 35 H 1.08998 * 111.00696 * 278.93625 * 15 14 13 36 36 H 1.08993 * 110.72351 * 206.13903 * 16 15 14 37 37 H 1.09001 * 110.71974 * 82.85667 * 16 15 14 38 38 H 1.09007 * 109.46941 * 65.39964 * 19 17 13 39 39 H 1.09001 * 109.47330 * 305.40131 * 19 17 13 40 40 H 0.96999 * 120.00587 * 355.08434 * 20 19 17 41 41 H 1.07997 * 126.80782 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4403 0.7000 7 6 2.0104 -1.2020 -0.0005 8 1 1.4704 -2.1373 -0.0005 9 16 3.7724 -1.2018 0.0001 10 6 4.0868 -2.9843 -0.0001 11 6 5.5733 -3.2323 -0.0002 12 8 6.3442 -2.2960 -0.0006 13 7 6.0459 -4.4944 -0.0010 14 6 5.2299 -5.7174 -0.1088 15 6 6.1937 -6.7885 -0.6776 16 6 7.5231 -6.4199 0.0326 17 6 7.4609 -4.8796 0.1046 18 1 8.0260 -4.4445 -0.7196 19 6 8.0331 -4.3975 1.4392 20 7 9.4717 -4.6711 1.4810 21 6 10.2102 -4.2370 2.5216 22 8 9.6815 -3.6226 3.4282 23 6 11.6571 -4.5068 2.5607 24 6 12.5434 -4.1320 3.5360 25 7 13.7362 -4.5905 3.1562 26 7 13.6218 -5.1990 2.0300 27 7 12.3998 -5.1799 1.6262 28 1 12.0639 -5.5724 0.8052 29 1 -0.4850 0.8399 0.0004 30 1 3.6442 -3.4313 -0.8904 31 1 3.6436 -3.4316 0.8896 32 1 4.8657 -6.0183 0.8736 33 1 4.3951 -5.5576 -0.7912 34 1 5.8691 -7.7920 -0.4024 35 1 6.2892 -6.6933 -1.7592 36 1 8.3792 -6.7440 -0.5591 37 1 7.5586 -6.8516 1.0328 38 1 7.5395 -4.9226 2.2571 39 1 7.8640 -3.3256 1.5411 40 1 9.8935 -5.1612 0.7580 41 1 12.3196 -3.5770 4.4350 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001721191641.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:13 Heat of formation + Delta-G solvation = 30.135136 kcal Electronic energy + Delta-G solvation = -26162.895032 eV Core-core repulsion = 22206.504532 eV Total energy + Delta-G solvation = -3956.390500 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.84958 -40.59496 -39.65981 -37.56628 -35.41772 -34.01185 -32.47987 -32.18433 -31.94136 -30.58822 -28.86327 -26.33015 -25.66123 -24.52686 -23.41960 -22.89775 -21.72213 -21.30332 -20.15871 -19.03684 -17.78242 -17.42399 -17.14126 -16.89125 -16.63667 -15.95997 -15.54314 -15.21207 -14.97075 -14.79584 -14.62066 -14.54796 -14.15743 -13.88984 -13.43216 -13.18418 -12.93115 -12.82272 -12.70853 -12.56358 -11.99035 -11.79262 -11.68943 -11.41358 -11.29275 -11.27506 -11.23635 -11.03864 -10.74816 -10.66224 -10.06644 -9.90345 -9.74534 -9.55096 -9.04105 -8.83753 -8.55403 -6.97260 -6.32598 -4.05145 0.37089 1.80879 1.87258 2.22315 2.59678 2.67323 2.78404 3.12920 3.30350 3.48105 3.53940 3.80254 3.98345 4.05751 4.18849 4.29780 4.32857 4.48774 4.61270 4.64079 4.67996 4.80558 4.93403 5.06432 5.09354 5.21690 5.26098 5.37026 5.43342 5.49576 5.54992 5.61498 5.67376 5.71483 5.79137 5.93022 6.01550 6.18666 6.74948 7.36353 7.49443 7.74233 7.90306 8.25991 8.37424 9.13434 10.76505 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015737 B = 0.002422 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.794193 B =11557.882157 C =12949.564166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.096 3.904 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.141 6.141 10 C -0.118 4.118 11 C 0.548 3.452 12 O -0.511 6.511 13 N -0.619 5.619 14 C 0.098 3.902 15 C -0.131 4.131 16 C -0.133 4.133 17 C 0.129 3.871 18 H 0.082 0.918 19 C 0.107 3.893 20 N -0.719 5.719 21 C 0.594 3.406 22 O -0.503 6.503 23 C -0.064 4.064 24 C 0.036 3.964 25 N -0.268 5.268 26 N -0.046 5.046 27 N -0.376 5.376 28 H 0.450 0.550 29 H 0.271 0.729 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.093 0.907 40 H 0.394 0.606 41 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.096 -18.899 -0.292 27.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.086 5.914 10 C -0.269 4.269 11 C 0.337 3.663 12 O -0.384 6.384 13 N -0.357 5.357 14 C -0.025 4.025 15 C -0.169 4.169 16 C -0.170 4.170 17 C 0.024 3.976 18 H 0.100 0.900 19 C -0.017 4.017 20 N -0.371 5.371 21 C 0.377 3.623 22 O -0.374 6.374 23 C -0.199 4.199 24 C -0.123 4.123 25 N -0.133 5.133 26 N -0.028 5.028 27 N -0.103 5.103 28 H 0.296 0.704 29 H 0.081 0.919 30 H 0.115 0.885 31 H 0.117 0.883 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.112 0.888 40 H 0.227 0.773 41 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 22.049 -17.232 0.204 27.985 hybrid contribution -2.001 -0.518 -0.773 2.207 sum 20.048 -17.750 -0.569 26.783 Atomic orbital electron populations 1.69932 1.05893 1.27821 1.47913 1.24709 0.94459 0.98969 0.93137 0.86744 0.81943 0.83302 0.79931 1.19215 1.19874 1.15891 1.22284 0.88111 0.97543 1.58969 0.89354 1.84832 1.09483 0.99698 1.97429 1.23268 0.93300 1.04517 1.05783 1.20099 0.90759 0.80494 0.74987 1.90725 1.58763 1.41182 1.47770 1.48460 1.06159 1.05815 1.75254 1.22380 0.94673 0.83876 1.01551 1.22773 0.94397 0.98948 1.00790 1.22804 0.98928 0.93274 1.02043 1.21616 0.84294 0.94985 0.96669 0.89978 1.21905 0.78113 1.03922 0.97762 1.45687 1.09956 1.58214 1.23275 1.16706 0.83022 0.79691 0.82887 1.90939 1.70938 1.39136 1.36434 1.22403 0.95024 1.07398 0.95040 1.23983 0.87324 1.00539 1.00497 1.75036 1.22634 1.10922 1.04750 1.78241 0.99074 1.16866 1.08606 1.45593 1.06928 1.38217 1.19550 0.70350 0.91894 0.88526 0.88338 0.90952 0.89785 0.89507 0.90280 0.90012 0.90010 0.90561 0.88836 0.77296 0.77690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.22 13.97 55.49 0.78 -25.44 16 2 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 3 Si 0.86 21.61 27.74 -169.99 -4.72 16.89 16 4 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 5 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.23 -5.94 6.74 56.52 0.38 -5.56 16 7 C -0.52 -14.76 10.04 30.94 0.31 -14.44 16 8 H 0.09 2.60 8.03 -52.49 -0.42 2.17 16 9 S -0.14 -3.50 18.55 -107.50 -1.99 -5.49 16 10 C -0.12 -2.20 5.25 36.01 0.19 -2.01 16 11 C 0.55 9.20 7.58 -10.99 -0.08 9.12 16 12 O -0.51 -10.42 15.04 5.55 0.08 -10.34 16 13 N -0.62 -7.17 3.06 -163.01 -0.50 -7.67 16 14 C 0.10 0.80 6.65 -2.53 -0.02 0.78 16 15 C -0.13 -0.66 7.09 -24.58 -0.17 -0.84 16 16 C -0.13 -0.61 6.12 -24.89 -0.15 -0.76 16 17 C 0.13 1.10 2.92 -66.95 -0.20 0.91 16 18 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 19 C 0.11 1.06 5.08 -4.04 -0.02 1.04 16 20 N -0.72 -5.06 5.41 -61.44 -0.33 -5.39 16 21 C 0.59 5.68 7.81 -12.61 -0.10 5.58 16 22 O -0.50 -7.02 16.92 5.26 0.09 -6.94 16 23 C -0.06 -0.50 7.17 -82.33 -0.59 -1.09 16 24 C 0.04 0.32 11.87 -17.35 -0.21 0.11 16 25 N -0.27 -2.72 12.35 30.47 0.38 -2.35 16 26 N -0.05 -0.40 13.35 60.35 0.81 0.41 16 27 N -0.38 -2.08 6.97 33.31 0.23 -1.85 16 28 H 0.45 0.54 8.32 -190.33 -1.58 -1.05 16 29 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 30 H 0.10 1.66 7.76 -51.91 -0.40 1.26 16 31 H 0.10 1.72 8.14 -51.92 -0.42 1.30 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.70 7.51 -51.93 -0.39 0.31 16 34 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.19 8.14 -51.93 -0.42 -0.24 16 37 H 0.08 0.35 7.76 -51.93 -0.40 -0.05 16 38 H 0.08 0.77 8.01 -51.92 -0.42 0.36 16 39 H 0.09 1.35 6.88 -51.93 -0.36 0.99 16 40 H 0.39 1.22 7.54 -40.82 -0.31 0.91 16 41 H 0.21 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 364.40 15.07 5.49 5.49 Total: -1.00 -38.00 364.40 -7.22 -45.22 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -6.40 Total: -3.62 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: -1.13 Total: 1.08 kcal Atomic # 7 Polarization: -43.65 SS G_CDS: 1.36 Total: -42.29 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: 0.17 Total: -17.28 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.72 Total: 16.89 kcal Atomic # 16 Polarization: -3.50 SS G_CDS: -1.99 Total: -5.49 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -38.00 -7.22 -45.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721191641.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.354 kcal (2) G-P(sol) polarization free energy of solvation -38.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds