Wall clock time and date at job start Tue Mar 31 2020 22:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86804 * 119.99534 * 2 1 4 4 H 1.48494 * 109.47050 * 269.99754 * 3 2 1 5 5 H 1.48496 * 109.47396 * 30.00003 * 3 2 1 6 6 H 1.48501 * 109.46807 * 150.00242 * 3 2 1 7 7 C 1.38794 * 120.00124 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00135 * 359.97438 * 7 2 1 9 9 S 1.76201 * 119.99691 * 180.02562 * 7 2 1 10 10 C 1.81001 * 99.99947 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47524 * 179.97438 * 10 9 7 12 12 O 1.21286 * 119.99580 * 359.97438 * 11 10 9 13 13 N 1.34772 * 120.00286 * 180.02562 * 11 10 9 14 14 C 1.47422 * 125.64710 * 5.12608 * 13 11 10 15 15 C 1.54915 * 104.83324 * 155.83524 * 14 13 11 16 16 C 1.55162 * 101.58203 * 37.00695 * 15 14 13 17 17 C 1.47026 * 125.64980 * 185.07958 * 13 11 10 18 18 H 1.08996 * 109.88409 * 300.67163 * 17 13 11 19 19 C 1.53006 * 109.87858 * 61.67815 * 17 13 11 20 20 N 1.46495 * 109.46901 * 185.39862 * 19 17 13 21 21 C 1.34780 * 119.99686 * 174.81171 * 20 19 17 22 22 O 1.21621 * 120.00093 * 0.27822 * 21 20 19 23 23 C 1.47231 * 119.99783 * 180.27152 * 21 20 19 24 24 C 1.37012 * 127.19034 * 179.68342 * 23 21 20 25 25 N 1.33320 * 106.37477 * 179.91112 * 24 23 21 26 26 N 1.28515 * 109.43700 * 0.36821 * 25 24 23 27 27 N 1.28709 * 110.64049 * 359.76504 * 26 25 24 28 28 H 0.97002 * 126.04242 * 179.97438 * 27 26 25 29 29 H 0.96991 * 120.00256 * 359.97438 * 1 2 3 30 30 H 1.09007 * 109.47333 * 59.99710 * 10 9 7 31 31 H 1.08997 * 109.47286 * 299.99928 * 10 9 7 32 32 H 1.08998 * 110.36708 * 274.67203 * 14 13 11 33 33 H 1.09002 * 110.36813 * 36.99826 * 14 13 11 34 34 H 1.08994 * 111.00717 * 155.07930 * 15 14 13 35 35 H 1.08998 * 111.00696 * 278.93625 * 15 14 13 36 36 H 1.08993 * 110.72351 * 206.13903 * 16 15 14 37 37 H 1.09001 * 110.71974 * 82.85667 * 16 15 14 38 38 H 1.09007 * 109.46941 * 65.39964 * 19 17 13 39 39 H 1.09001 * 109.47330 * 305.40131 * 19 17 13 40 40 H 0.96999 * 120.00587 * 355.08434 * 20 19 17 41 41 H 1.07997 * 126.80782 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4403 0.7000 7 6 2.0104 -1.2020 -0.0005 8 1 1.4704 -2.1373 -0.0005 9 16 3.7724 -1.2018 0.0001 10 6 4.0868 -2.9843 -0.0001 11 6 5.5733 -3.2323 -0.0002 12 8 6.3442 -2.2960 -0.0006 13 7 6.0459 -4.4944 -0.0010 14 6 5.2299 -5.7174 -0.1088 15 6 6.1937 -6.7885 -0.6776 16 6 7.5231 -6.4199 0.0326 17 6 7.4609 -4.8796 0.1046 18 1 8.0260 -4.4445 -0.7196 19 6 8.0331 -4.3975 1.4392 20 7 9.4717 -4.6711 1.4810 21 6 10.2102 -4.2370 2.5216 22 8 9.6815 -3.6226 3.4282 23 6 11.6571 -4.5068 2.5607 24 6 12.5434 -4.1320 3.5360 25 7 13.7362 -4.5905 3.1562 26 7 13.6218 -5.1990 2.0300 27 7 12.3998 -5.1799 1.6262 28 1 12.0639 -5.5724 0.8052 29 1 -0.4850 0.8399 0.0004 30 1 3.6442 -3.4313 -0.8904 31 1 3.6436 -3.4316 0.8896 32 1 4.8657 -6.0183 0.8736 33 1 4.3951 -5.5576 -0.7912 34 1 5.8691 -7.7920 -0.4024 35 1 6.2892 -6.6933 -1.7592 36 1 8.3792 -6.7440 -0.5591 37 1 7.5586 -6.8516 1.0328 38 1 7.5395 -4.9226 2.2571 39 1 7.8640 -3.3256 1.5411 40 1 9.8935 -5.1612 0.7580 41 1 12.3196 -3.5770 4.4350 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001721191641.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:13 Heat of formation + Delta-G solvation = -0.828432 kcal Electronic energy + Delta-G solvation = -26164.237713 eV Core-core repulsion = 22206.504532 eV Total energy + Delta-G solvation = -3957.733182 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.49227 -41.50406 -40.58319 -38.62477 -36.23070 -34.69315 -34.66570 -33.10320 -32.67276 -31.35624 -30.09310 -27.87238 -27.02241 -25.23753 -24.16781 -23.66457 -22.39859 -21.94978 -20.96273 -20.18464 -19.46537 -18.28601 -18.10973 -17.58830 -17.52475 -17.15327 -16.81325 -16.48230 -16.35426 -15.85477 -15.54555 -15.41154 -15.23407 -14.92175 -14.85810 -14.16403 -14.05971 -13.75264 -13.71955 -13.40254 -13.36677 -13.06843 -12.97787 -12.69507 -12.46361 -12.13435 -12.01365 -11.89740 -11.88811 -11.66301 -11.58471 -11.19117 -11.05225 -10.78351 -10.55987 -10.37392 -9.82024 -9.02927 -8.53549 -6.24659 -0.28819 0.92678 1.11352 1.27745 1.28952 1.41650 1.45838 1.50066 1.69719 1.85743 2.13990 2.22979 2.66076 2.84682 3.20305 3.34790 3.45612 3.57892 3.75599 3.80407 3.86312 4.00433 4.04498 4.13646 4.24338 4.36525 4.39940 4.62273 4.71526 4.79074 4.86026 4.89139 4.97478 5.00517 5.14166 5.33902 5.37519 5.61696 5.68905 6.09407 6.13469 6.28420 6.80215 6.91711 7.01210 7.09130 8.58694 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015737 B = 0.002422 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.794193 B =11557.882157 C =12949.564166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.047 3.953 3 Si 0.912 3.088 4 H -0.261 1.261 5 H -0.259 1.259 6 H -0.239 1.239 7 C -0.527 4.527 8 H 0.064 0.936 9 S -0.178 6.178 10 C -0.103 4.103 11 C 0.548 3.452 12 O -0.556 6.556 13 N -0.610 5.610 14 C 0.083 3.917 15 C -0.120 4.120 16 C -0.120 4.120 17 C 0.126 3.874 18 H 0.084 0.916 19 C 0.115 3.885 20 N -0.697 5.697 21 C 0.599 3.401 22 O -0.552 6.552 23 C -0.061 4.061 24 C 0.028 3.972 25 N -0.296 5.296 26 N -0.052 5.052 27 N -0.345 5.345 28 H 0.470 0.530 29 H 0.277 0.723 30 H 0.112 0.888 31 H 0.109 0.891 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.112 0.888 35 H 0.083 0.917 36 H 0.119 0.881 37 H 0.092 0.908 38 H 0.075 0.925 39 H 0.045 0.955 40 H 0.417 0.583 41 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.821 -21.453 -1.354 30.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.159 4.159 3 Si 0.734 3.266 4 H -0.186 1.186 5 H -0.183 1.183 6 H -0.163 1.163 7 C -0.674 4.674 8 H 0.082 0.918 9 S 0.049 5.951 10 C -0.254 4.254 11 C 0.335 3.665 12 O -0.434 6.434 13 N -0.345 5.345 14 C -0.039 4.039 15 C -0.158 4.158 16 C -0.158 4.158 17 C 0.022 3.978 18 H 0.102 0.898 19 C -0.010 4.010 20 N -0.350 5.350 21 C 0.383 3.617 22 O -0.428 6.428 23 C -0.196 4.196 24 C -0.132 4.132 25 N -0.160 5.160 26 N -0.035 5.035 27 N -0.076 5.076 28 H 0.321 0.679 29 H 0.087 0.913 30 H 0.130 0.870 31 H 0.127 0.873 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.131 0.869 35 H 0.102 0.898 36 H 0.137 0.863 37 H 0.111 0.889 38 H 0.093 0.907 39 H 0.063 0.937 40 H 0.254 0.746 41 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 23.791 -19.890 -0.923 31.023 hybrid contribution -2.531 0.074 -0.474 2.576 sum 21.260 -19.815 -1.396 29.096 Atomic orbital electron populations 1.70006 1.07195 1.29019 1.49065 1.25536 0.95274 1.02152 0.92941 0.85895 0.80645 0.79786 0.80228 1.18595 1.18342 1.16310 1.22422 0.90046 0.96701 1.58271 0.91813 1.84760 1.06696 1.06088 1.97570 1.23221 0.95646 0.99479 1.07049 1.19671 0.89419 0.81975 0.75385 1.90707 1.59235 1.43090 1.50404 1.48402 1.08426 1.05023 1.72680 1.22768 0.95308 0.83297 1.02513 1.22783 0.93312 0.98791 1.00917 1.22869 1.00233 0.89220 1.03467 1.21901 0.82127 0.98178 0.95588 0.89815 1.21640 0.79613 1.00951 0.98756 1.45399 1.08826 1.57480 1.23298 1.16833 0.83501 0.78847 0.82530 1.90924 1.71947 1.41460 1.38440 1.22014 0.94014 1.08020 0.95525 1.24255 0.87247 1.00507 1.01167 1.75037 1.23396 1.12044 1.05568 1.78175 0.99963 1.16897 1.08442 1.45521 1.05799 1.36697 1.19594 0.67893 0.91342 0.86998 0.87311 0.89964 0.90045 0.86946 0.89833 0.86301 0.88934 0.90698 0.93692 0.74572 0.76891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.43 13.97 21.65 0.30 -55.13 16 2 C 0.05 2.73 5.50 84.86 0.47 3.19 16 3 Si 0.91 45.13 27.74 68.60 1.90 47.03 16 4 H -0.26 -12.56 7.11 99.48 0.71 -11.86 16 5 H -0.26 -12.04 7.11 99.48 0.71 -11.34 16 6 H -0.24 -11.91 6.74 99.48 0.67 -11.23 16 7 C -0.53 -30.48 10.04 67.95 0.68 -29.80 16 8 H 0.06 3.87 8.03 -2.91 -0.02 3.85 16 9 S -0.18 -8.97 18.55 -56.49 -1.05 -10.02 16 10 C -0.10 -3.84 5.25 71.24 0.37 -3.47 16 11 C 0.55 18.32 7.58 87.66 0.66 18.98 16 12 O -0.56 -23.19 15.04 -3.05 -0.05 -23.23 16 13 N -0.61 -13.17 3.06 -788.03 -2.41 -15.58 16 14 C 0.08 1.12 6.65 86.86 0.58 1.69 16 15 C -0.12 -0.66 7.09 31.99 0.23 -0.43 16 16 C -0.12 -0.51 6.12 31.78 0.19 -0.32 16 17 C 0.13 1.83 2.92 45.34 0.13 1.96 16 18 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 19 C 0.12 2.18 5.08 86.38 0.44 2.61 16 20 N -0.70 -8.38 5.41 -466.55 -2.52 -10.91 16 21 C 0.60 10.85 7.81 86.61 0.68 11.52 16 22 O -0.55 -15.69 16.92 -4.10 -0.07 -15.76 16 23 C -0.06 -0.86 7.17 40.41 0.29 -0.57 16 24 C 0.03 0.48 11.87 84.18 1.00 1.48 16 25 N -0.30 -5.73 12.35 -57.50 -0.71 -6.44 16 26 N -0.05 -0.81 13.35 37.02 0.49 -0.32 16 27 N -0.34 -2.94 6.97 -48.52 -0.34 -3.28 16 28 H 0.47 -0.58 8.32 -219.90 -1.83 -2.41 16 29 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 30 H 0.11 3.79 7.76 -2.39 -0.02 3.77 16 31 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 32 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.08 1.17 7.51 -2.39 -0.02 1.15 16 34 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 35 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.12 -0.25 8.14 -2.39 -0.02 -0.27 16 37 H 0.09 0.30 7.76 -2.39 -0.02 0.28 16 38 H 0.07 1.44 8.01 -2.38 -0.02 1.42 16 39 H 0.04 1.34 6.88 -2.39 -0.02 1.32 16 40 H 0.42 1.05 7.54 -92.71 -0.70 0.35 16 41 H 0.21 3.02 8.06 -2.91 -0.02 2.99 16 Total: -1.00 -87.22 364.40 -0.20 -87.41 By element: Atomic # 1 Polarization: 0.83 SS G_CDS: -1.47 Total: -0.64 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: 5.72 Total: 6.86 kcal Atomic # 7 Polarization: -86.47 SS G_CDS: -5.19 Total: -91.66 kcal Atomic # 8 Polarization: -38.87 SS G_CDS: -0.12 Total: -38.99 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.90 Total: 47.03 kcal Atomic # 16 Polarization: -8.97 SS G_CDS: -1.05 Total: -10.02 kcal Total: -87.22 -0.20 -87.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721191641.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.585 kcal (2) G-P(sol) polarization free energy of solvation -87.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds