Wall clock time and date at job start Tue Mar 31 2020 22:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86803 * 119.99747 * 2 1 4 4 H 1.48496 * 109.47074 * 269.99809 * 3 2 1 5 5 H 1.48497 * 109.47301 * 29.99892 * 3 2 1 6 6 H 1.48506 * 109.47183 * 149.99911 * 3 2 1 7 7 C 1.38793 * 120.00399 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00076 * 359.97438 * 7 2 1 9 9 S 1.76206 * 120.00175 * 180.02562 * 7 2 1 10 10 C 1.81003 * 99.99725 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46964 * 179.97438 * 10 9 7 12 12 O 1.21289 * 119.99748 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00478 * 180.02562 * 11 10 9 14 14 C 1.47428 * 125.64336 * 4.96901 * 13 11 10 15 15 C 1.55389 * 104.87240 * 204.09589 * 14 13 11 16 16 C 1.55148 * 101.36848 * 323.01968 * 15 14 13 17 17 C 1.47018 * 125.65476 * 184.93423 * 13 11 10 18 18 H 1.09003 * 109.88214 * 59.55238 * 17 13 11 19 19 C 1.52998 * 110.00658 * 298.46479 * 17 13 11 20 20 N 1.46507 * 109.46979 * 176.74834 * 19 17 13 21 21 C 1.34777 * 119.99781 * 184.96296 * 20 19 17 22 22 O 1.21618 * 120.00179 * 359.97438 * 21 20 19 23 23 C 1.47240 * 119.99741 * 179.97438 * 21 20 19 24 24 C 1.37002 * 127.18546 * 179.68295 * 23 21 20 25 25 N 1.33320 * 106.37149 * 179.84645 * 24 23 21 26 26 N 1.28522 * 109.43710 * 0.43226 * 25 24 23 27 27 N 1.28711 * 110.63480 * 359.72246 * 26 25 24 28 28 H 0.96998 * 126.03214 * 180.02562 * 27 26 25 29 29 H 0.96993 * 120.00094 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.47287 * 59.99879 * 10 9 7 31 31 H 1.08998 * 109.47197 * 299.99802 * 10 9 7 32 32 H 1.08998 * 110.36898 * 322.93714 * 14 13 11 33 33 H 1.09004 * 110.36211 * 85.14619 * 14 13 11 34 34 H 1.08997 * 111.18946 * 204.97926 * 15 14 13 35 35 H 1.09003 * 111.02008 * 80.98642 * 15 14 13 36 36 H 1.08997 * 110.72182 * 277.03849 * 16 15 14 37 37 H 1.09001 * 110.72101 * 153.94073 * 16 15 14 38 38 H 1.08999 * 109.47126 * 296.74502 * 19 17 13 39 39 H 1.09003 * 109.47737 * 56.74919 * 19 17 13 40 40 H 0.96997 * 119.99872 * 4.96011 * 20 19 17 41 41 H 1.08005 * 126.81821 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4403 0.7001 7 6 2.0103 -1.2019 0.0005 8 1 1.4704 -2.1373 0.0014 9 16 3.7724 -1.2019 0.0012 10 6 4.0867 -2.9844 0.0025 11 6 5.5732 -3.2324 0.0026 12 8 6.3441 -2.2960 0.0024 13 7 6.0459 -4.4945 0.0030 14 6 5.2295 -5.7177 -0.1004 15 6 6.0951 -6.8312 0.5520 16 6 7.5187 -6.4215 0.0908 17 6 7.4611 -4.8795 0.1059 18 1 7.8811 -4.5019 1.0382 19 6 8.2441 -4.3178 -1.0824 20 7 9.6645 -4.6419 -0.9284 21 6 10.5647 -4.1608 -1.8085 22 8 10.1979 -3.4581 -2.7309 23 6 11.9924 -4.4861 -1.6533 24 6 13.0253 -4.0849 -2.4589 25 7 14.1342 -4.6109 -1.9381 26 7 13.8325 -5.2975 -0.8944 27 7 12.5646 -5.2582 -0.6765 28 1 12.0968 -5.6972 0.0510 29 1 -0.4850 0.8400 -0.0004 30 1 3.6441 -3.4321 -0.8873 31 1 3.6435 -3.4308 0.8926 32 1 4.2938 -5.5965 0.4452 33 1 5.0305 -5.9536 -1.1458 34 1 5.8274 -7.8149 0.1664 35 1 6.0133 -6.8038 1.6386 36 1 7.7192 -6.7902 -0.9151 37 1 8.2706 -6.7862 0.7906 38 1 7.8689 -4.7589 -2.0059 39 1 8.1204 -3.2355 -1.1203 40 1 9.9570 -5.2026 -0.1929 41 1 12.9557 -3.4632 -3.3393 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001721191642.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:16 Heat of formation + Delta-G solvation = 30.172256 kcal Electronic energy + Delta-G solvation = -26150.731045 eV Core-core repulsion = 22194.342154 eV Total energy + Delta-G solvation = -3956.388891 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.85141 -40.58981 -39.65253 -37.55720 -35.40999 -34.01276 -32.48381 -32.18827 -31.93076 -30.58194 -28.85348 -26.32300 -25.66394 -24.52865 -23.42284 -22.89932 -21.73887 -21.28286 -20.15532 -19.04681 -17.78668 -17.40545 -17.15767 -16.88592 -16.64202 -15.93057 -15.52045 -15.21423 -14.99386 -14.79617 -14.60257 -14.53818 -14.16611 -13.88317 -13.44769 -13.19754 -12.96067 -12.82374 -12.70953 -12.49329 -12.01474 -11.79396 -11.68235 -11.40515 -11.29581 -11.27706 -11.23980 -11.04000 -10.74338 -10.66379 -10.06759 -9.90812 -9.76637 -9.50466 -9.04273 -8.84328 -8.55514 -6.97580 -6.32906 -4.05480 0.37102 1.80682 1.87248 2.23143 2.59925 2.66868 2.78147 3.12511 3.30962 3.47505 3.53539 3.80232 3.99072 4.05618 4.18382 4.29517 4.32226 4.48774 4.61163 4.63930 4.68560 4.80096 4.93537 5.06197 5.09675 5.20950 5.25967 5.37436 5.43566 5.49448 5.56426 5.63535 5.68314 5.71840 5.79005 5.92305 6.01407 6.19225 6.75684 7.36214 7.50057 7.74022 7.89958 8.25859 8.37012 9.13143 10.76179 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.016545 B = 0.002381 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.973964 B =11755.458634 C =13121.342630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.096 3.904 3 Si 0.856 3.144 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.140 6.140 10 C -0.118 4.118 11 C 0.548 3.452 12 O -0.510 6.510 13 N -0.619 5.619 14 C 0.098 3.902 15 C -0.131 4.131 16 C -0.134 4.134 17 C 0.130 3.870 18 H 0.081 0.919 19 C 0.106 3.894 20 N -0.720 5.720 21 C 0.594 3.406 22 O -0.503 6.503 23 C -0.064 4.064 24 C 0.036 3.964 25 N -0.268 5.268 26 N -0.046 5.046 27 N -0.376 5.376 28 H 0.450 0.550 29 H 0.271 0.729 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.098 0.902 40 H 0.393 0.607 41 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.907 -19.029 1.159 27.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.086 5.914 10 C -0.269 4.269 11 C 0.337 3.663 12 O -0.384 6.384 13 N -0.357 5.357 14 C -0.025 4.025 15 C -0.169 4.169 16 C -0.172 4.172 17 C 0.025 3.975 18 H 0.099 0.901 19 C -0.018 4.018 20 N -0.372 5.372 21 C 0.377 3.623 22 O -0.374 6.374 23 C -0.199 4.199 24 C -0.124 4.124 25 N -0.133 5.133 26 N -0.028 5.028 27 N -0.103 5.103 28 H 0.296 0.704 29 H 0.081 0.919 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.103 0.897 33 H 0.090 0.910 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.116 0.884 40 H 0.227 0.773 41 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 21.924 -17.360 0.838 27.977 hybrid contribution -2.100 -0.546 0.512 2.229 sum 19.825 -17.906 1.350 26.748 Atomic orbital electron populations 1.69931 1.05897 1.27822 1.47905 1.24707 0.94460 0.98974 0.93132 0.86743 0.81863 0.83283 0.80014 1.19141 1.19904 1.15944 1.22285 0.88117 0.97540 1.58986 0.89361 1.84839 1.09471 0.99681 1.97428 1.23261 0.93293 1.04529 1.05768 1.20104 0.90764 0.80487 0.74990 1.90721 1.58692 1.41182 1.47784 1.48447 1.05960 1.05832 1.75419 1.22465 0.95229 0.83582 1.01249 1.22843 0.94069 0.98528 1.01429 1.22802 0.98382 0.93222 1.02753 1.21623 0.83274 0.94664 0.97938 0.90053 1.21951 0.77661 1.03731 0.98484 1.45711 1.08251 1.53057 1.30158 1.16706 0.82319 0.80450 0.82861 1.90938 1.78790 1.36261 1.31453 1.22409 0.96440 1.05046 0.95955 1.23981 0.86437 1.00786 1.01169 1.75037 1.25331 1.09271 1.03705 1.78245 0.94131 1.17119 1.13312 1.45589 1.07286 1.34906 1.22511 0.70357 0.91892 0.88469 0.88407 0.89735 0.90959 0.89504 0.90243 0.90060 0.90054 0.90672 0.88391 0.77347 0.77694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.18 13.97 55.49 0.78 -25.40 16 2 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 3 Si 0.86 21.58 27.74 -169.99 -4.72 16.87 16 4 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.24 -5.92 6.74 56.52 0.38 -5.54 16 7 C -0.52 -14.73 10.04 30.94 0.31 -14.42 16 8 H 0.09 2.59 8.03 -52.49 -0.42 2.17 16 9 S -0.14 -3.48 18.55 -107.50 -1.99 -5.48 16 10 C -0.12 -2.19 5.09 36.01 0.18 -2.00 16 11 C 0.55 9.18 7.69 -10.99 -0.08 9.09 16 12 O -0.51 -10.38 14.68 5.55 0.08 -10.30 16 13 N -0.62 -7.16 3.07 -162.71 -0.50 -7.66 16 14 C 0.10 0.79 6.75 -2.27 -0.02 0.78 16 15 C -0.13 -0.66 7.12 -24.33 -0.17 -0.83 16 16 C -0.13 -0.61 5.98 -24.90 -0.15 -0.76 16 17 C 0.13 1.11 3.00 -66.96 -0.20 0.91 16 18 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 19 C 0.11 1.06 5.06 -4.04 -0.02 1.04 16 20 N -0.72 -5.07 5.39 -61.44 -0.33 -5.40 16 21 C 0.59 5.67 7.81 -12.60 -0.10 5.57 16 22 O -0.50 -7.03 16.92 5.26 0.09 -6.95 16 23 C -0.06 -0.50 7.17 -82.33 -0.59 -1.09 16 24 C 0.04 0.31 11.87 -17.35 -0.21 0.11 16 25 N -0.27 -2.71 12.35 30.47 0.38 -2.34 16 26 N -0.05 -0.40 13.35 60.35 0.81 0.41 16 27 N -0.38 -2.07 6.97 33.31 0.23 -1.83 16 28 H 0.45 0.52 8.32 -190.33 -1.58 -1.06 16 29 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.10 1.68 8.14 -51.92 -0.42 1.26 16 31 H 0.10 1.68 7.95 -51.92 -0.41 1.27 16 32 H 0.08 0.70 7.48 -51.93 -0.39 0.31 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.35 7.80 -51.93 -0.40 -0.06 16 37 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 38 H 0.08 0.78 8.07 -51.93 -0.42 0.37 16 39 H 0.10 1.43 6.60 -51.93 -0.34 1.08 16 40 H 0.39 1.21 7.45 -40.82 -0.30 0.91 16 41 H 0.21 1.44 8.06 -52.48 -0.42 1.02 16 LS Contribution 363.91 15.07 5.48 5.48 Total: -1.00 -37.89 363.91 -7.23 -45.11 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -6.39 Total: -3.59 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: -1.14 Total: 1.07 kcal Atomic # 7 Polarization: -43.58 SS G_CDS: 1.36 Total: -42.22 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: 0.17 Total: -17.24 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.72 Total: 16.87 kcal Atomic # 16 Polarization: -3.48 SS G_CDS: -1.99 Total: -5.48 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -37.89 -7.23 -45.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721191642.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.286 kcal (2) G-P(sol) polarization free energy of solvation -37.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds