Wall clock time and date at job start Tue Mar 31 2020 22:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86803 * 119.99747 * 2 1 4 4 H 1.48496 * 109.47074 * 269.99809 * 3 2 1 5 5 H 1.48497 * 109.47301 * 29.99892 * 3 2 1 6 6 H 1.48506 * 109.47183 * 149.99911 * 3 2 1 7 7 C 1.38793 * 120.00399 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00076 * 359.97438 * 7 2 1 9 9 S 1.76206 * 120.00175 * 180.02562 * 7 2 1 10 10 C 1.81003 * 99.99725 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46964 * 179.97438 * 10 9 7 12 12 O 1.21289 * 119.99748 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00478 * 180.02562 * 11 10 9 14 14 C 1.47428 * 125.64336 * 4.96901 * 13 11 10 15 15 C 1.55389 * 104.87240 * 204.09589 * 14 13 11 16 16 C 1.55148 * 101.36848 * 323.01968 * 15 14 13 17 17 C 1.47018 * 125.65476 * 184.93423 * 13 11 10 18 18 H 1.09003 * 109.88214 * 59.55238 * 17 13 11 19 19 C 1.52998 * 110.00658 * 298.46479 * 17 13 11 20 20 N 1.46507 * 109.46979 * 176.74834 * 19 17 13 21 21 C 1.34777 * 119.99781 * 184.96296 * 20 19 17 22 22 O 1.21618 * 120.00179 * 359.97438 * 21 20 19 23 23 C 1.47240 * 119.99741 * 179.97438 * 21 20 19 24 24 C 1.37002 * 127.18546 * 179.68295 * 23 21 20 25 25 N 1.33320 * 106.37149 * 179.84645 * 24 23 21 26 26 N 1.28522 * 109.43710 * 0.43226 * 25 24 23 27 27 N 1.28711 * 110.63480 * 359.72246 * 26 25 24 28 28 H 0.96998 * 126.03214 * 180.02562 * 27 26 25 29 29 H 0.96993 * 120.00094 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.47287 * 59.99879 * 10 9 7 31 31 H 1.08998 * 109.47197 * 299.99802 * 10 9 7 32 32 H 1.08998 * 110.36898 * 322.93714 * 14 13 11 33 33 H 1.09004 * 110.36211 * 85.14619 * 14 13 11 34 34 H 1.08997 * 111.18946 * 204.97926 * 15 14 13 35 35 H 1.09003 * 111.02008 * 80.98642 * 15 14 13 36 36 H 1.08997 * 110.72182 * 277.03849 * 16 15 14 37 37 H 1.09001 * 110.72101 * 153.94073 * 16 15 14 38 38 H 1.08999 * 109.47126 * 296.74502 * 19 17 13 39 39 H 1.09003 * 109.47737 * 56.74919 * 19 17 13 40 40 H 0.96997 * 119.99872 * 4.96011 * 20 19 17 41 41 H 1.08005 * 126.81821 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4403 0.7001 7 6 2.0103 -1.2019 0.0005 8 1 1.4704 -2.1373 0.0014 9 16 3.7724 -1.2019 0.0012 10 6 4.0867 -2.9844 0.0025 11 6 5.5732 -3.2324 0.0026 12 8 6.3441 -2.2960 0.0024 13 7 6.0459 -4.4945 0.0030 14 6 5.2295 -5.7177 -0.1004 15 6 6.0951 -6.8312 0.5520 16 6 7.5187 -6.4215 0.0908 17 6 7.4611 -4.8795 0.1059 18 1 7.8811 -4.5019 1.0382 19 6 8.2441 -4.3178 -1.0824 20 7 9.6645 -4.6419 -0.9284 21 6 10.5647 -4.1608 -1.8085 22 8 10.1979 -3.4581 -2.7309 23 6 11.9924 -4.4861 -1.6533 24 6 13.0253 -4.0849 -2.4589 25 7 14.1342 -4.6109 -1.9381 26 7 13.8325 -5.2975 -0.8944 27 7 12.5646 -5.2582 -0.6765 28 1 12.0968 -5.6972 0.0510 29 1 -0.4850 0.8400 -0.0004 30 1 3.6441 -3.4321 -0.8873 31 1 3.6435 -3.4308 0.8926 32 1 4.2938 -5.5965 0.4452 33 1 5.0305 -5.9536 -1.1458 34 1 5.8274 -7.8149 0.1664 35 1 6.0133 -6.8038 1.6386 36 1 7.7192 -6.7902 -0.9151 37 1 8.2706 -6.7862 0.7906 38 1 7.8689 -4.7589 -2.0059 39 1 8.1204 -3.2355 -1.1203 40 1 9.9570 -5.2026 -0.1929 41 1 12.9557 -3.4632 -3.3393 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001721191642.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:16 Heat of formation + Delta-G solvation = -0.659602 kcal Electronic energy + Delta-G solvation = -26152.068015 eV Core-core repulsion = 22194.342154 eV Total energy + Delta-G solvation = -3957.725861 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.49124 -41.49858 -40.57627 -38.60970 -36.22500 -34.69294 -34.66477 -33.10081 -32.66080 -31.35298 -30.07315 -27.87067 -27.01617 -25.23919 -24.16775 -23.66064 -22.41173 -21.93123 -20.95730 -20.19611 -19.45893 -18.29665 -18.09695 -17.57322 -17.52888 -17.15129 -16.79371 -16.46958 -16.33205 -15.89015 -15.51381 -15.40698 -15.22659 -14.92246 -14.84390 -14.18374 -14.11395 -13.75682 -13.64737 -13.40113 -13.34999 -13.08106 -12.98815 -12.69368 -12.46230 -12.12460 -12.00914 -11.89604 -11.87998 -11.66330 -11.58119 -11.19221 -11.04643 -10.77677 -10.55612 -10.35423 -9.82112 -9.02774 -8.53461 -6.24533 -0.28559 0.92788 1.11470 1.28657 1.29724 1.42297 1.45159 1.49734 1.69818 1.86062 2.14147 2.23001 2.66265 2.84829 3.20516 3.35767 3.45847 3.58340 3.74315 3.81113 3.86362 4.00570 4.05067 4.14779 4.23778 4.37159 4.40616 4.62023 4.73674 4.79841 4.86297 4.89168 4.97733 5.00392 5.14405 5.34319 5.37579 5.61924 5.68983 6.09478 6.14129 6.28718 6.80883 6.91848 7.01686 7.09215 8.58744 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.016545 B = 0.002381 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.973964 B =11755.458634 C =13121.342630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.047 3.953 3 Si 0.912 3.088 4 H -0.264 1.264 5 H -0.258 1.258 6 H -0.237 1.237 7 C -0.527 4.527 8 H 0.064 0.936 9 S -0.178 6.178 10 C -0.103 4.103 11 C 0.547 3.453 12 O -0.556 6.556 13 N -0.610 5.610 14 C 0.082 3.918 15 C -0.119 4.119 16 C -0.122 4.122 17 C 0.126 3.874 18 H 0.084 0.916 19 C 0.114 3.886 20 N -0.697 5.697 21 C 0.599 3.401 22 O -0.552 6.552 23 C -0.060 4.060 24 C 0.028 3.972 25 N -0.296 5.296 26 N -0.052 5.052 27 N -0.345 5.345 28 H 0.470 0.530 29 H 0.277 0.723 30 H 0.108 0.892 31 H 0.112 0.888 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.112 0.888 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.119 0.881 38 H 0.071 0.929 39 H 0.049 0.951 40 H 0.416 0.584 41 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.464 -21.673 2.226 30.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.159 4.159 3 Si 0.734 3.266 4 H -0.189 1.189 5 H -0.182 1.182 6 H -0.161 1.161 7 C -0.674 4.674 8 H 0.082 0.918 9 S 0.049 5.951 10 C -0.253 4.253 11 C 0.335 3.665 12 O -0.434 6.434 13 N -0.345 5.345 14 C -0.039 4.039 15 C -0.157 4.157 16 C -0.159 4.159 17 C 0.022 3.978 18 H 0.102 0.898 19 C -0.011 4.011 20 N -0.350 5.350 21 C 0.383 3.617 22 O -0.428 6.428 23 C -0.196 4.196 24 C -0.132 4.132 25 N -0.161 5.161 26 N -0.035 5.035 27 N -0.076 5.076 28 H 0.321 0.679 29 H 0.087 0.913 30 H 0.127 0.873 31 H 0.131 0.869 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.130 0.870 35 H 0.103 0.897 36 H 0.110 0.890 37 H 0.137 0.863 38 H 0.089 0.911 39 H 0.068 0.932 40 H 0.254 0.746 41 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 23.488 -20.113 1.971 30.986 hybrid contribution -2.581 0.073 0.197 2.589 sum 20.908 -20.040 2.168 29.042 Atomic orbital electron populations 1.70004 1.07193 1.29012 1.49066 1.25531 0.95271 1.02143 0.92950 0.85899 0.80704 0.79816 0.80152 1.18892 1.18247 1.16141 1.22423 0.90048 0.96697 1.58260 0.91798 1.84770 1.06685 1.06107 1.97569 1.23212 0.95611 0.99461 1.07054 1.19685 0.89439 0.81959 0.75404 1.90708 1.59168 1.43089 1.50386 1.48387 1.08223 1.05047 1.72850 1.22848 0.95565 0.83125 1.02397 1.22854 0.93149 0.98167 1.01556 1.22866 0.99325 0.89172 1.04571 1.21907 0.80975 0.97800 0.97081 0.89767 1.21661 0.79285 1.00842 0.99264 1.45414 1.06846 1.52517 1.30241 1.16836 0.82965 0.79624 0.82313 1.90923 1.79632 1.38584 1.33658 1.22014 0.95266 1.05696 0.96579 1.24252 0.86463 1.00803 1.01672 1.75039 1.26132 1.10336 1.04544 1.78179 0.95084 1.17103 1.13117 1.45516 1.06424 1.33522 1.22141 0.67894 0.91345 0.87331 0.86944 0.89980 0.90038 0.86964 0.89744 0.89041 0.86281 0.91054 0.93213 0.74600 0.76895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.33 13.97 21.65 0.30 -55.03 16 2 C 0.05 2.73 5.50 84.86 0.47 3.19 16 3 Si 0.91 45.06 27.74 68.60 1.90 46.97 16 4 H -0.26 -12.83 7.11 99.48 0.71 -12.12 16 5 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 6 H -0.24 -11.73 6.74 99.48 0.67 -11.06 16 7 C -0.53 -30.40 10.04 67.95 0.68 -29.72 16 8 H 0.06 3.87 8.03 -2.91 -0.02 3.84 16 9 S -0.18 -8.95 18.55 -56.49 -1.05 -10.00 16 10 C -0.10 -3.80 5.09 71.24 0.36 -3.43 16 11 C 0.55 18.24 7.69 87.66 0.67 18.92 16 12 O -0.56 -23.11 14.68 -3.06 -0.04 -23.16 16 13 N -0.61 -13.13 3.07 -787.09 -2.42 -15.54 16 14 C 0.08 1.11 6.75 87.02 0.59 1.70 16 15 C -0.12 -0.65 7.12 32.15 0.23 -0.42 16 16 C -0.12 -0.51 5.98 31.78 0.19 -0.32 16 17 C 0.13 1.83 3.00 45.34 0.14 1.97 16 18 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 19 C 0.11 2.18 5.06 86.38 0.44 2.62 16 20 N -0.70 -8.38 5.39 -466.55 -2.51 -10.90 16 21 C 0.60 10.84 7.81 86.61 0.68 11.52 16 22 O -0.55 -15.74 16.92 -4.09 -0.07 -15.80 16 23 C -0.06 -0.85 7.17 40.41 0.29 -0.56 16 24 C 0.03 0.47 11.87 84.18 1.00 1.47 16 25 N -0.30 -5.70 12.35 -57.50 -0.71 -6.41 16 26 N -0.05 -0.81 13.35 37.02 0.49 -0.31 16 27 N -0.34 -2.90 6.97 -48.52 -0.34 -3.24 16 28 H 0.47 -0.65 8.32 -219.90 -1.83 -2.48 16 29 H 0.28 15.51 8.31 -92.71 -0.77 14.74 16 30 H 0.11 3.74 8.14 -2.40 -0.02 3.72 16 31 H 0.11 3.81 7.95 -2.40 -0.02 3.79 16 32 H 0.08 1.17 7.48 -2.39 -0.02 1.15 16 33 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 35 H 0.08 0.44 8.14 -2.39 -0.02 0.43 16 36 H 0.09 0.30 7.80 -2.39 -0.02 0.28 16 37 H 0.12 -0.27 8.14 -2.39 -0.02 -0.29 16 38 H 0.07 1.42 8.07 -2.39 -0.02 1.40 16 39 H 0.05 1.50 6.60 -2.39 -0.02 1.48 16 40 H 0.42 1.00 7.45 -92.71 -0.69 0.31 16 41 H 0.21 3.00 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -87.04 363.91 -0.17 -87.21 By element: Atomic # 1 Polarization: 0.74 SS G_CDS: -1.46 Total: -0.72 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: 5.73 Total: 6.93 kcal Atomic # 7 Polarization: -86.25 SS G_CDS: -5.18 Total: -91.43 kcal Atomic # 8 Polarization: -38.85 SS G_CDS: -0.11 Total: -38.96 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.90 Total: 46.97 kcal Atomic # 16 Polarization: -8.95 SS G_CDS: -1.05 Total: -10.00 kcal Total: -87.04 -0.17 -87.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721191642.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.550 kcal (2) G-P(sol) polarization free energy of solvation -87.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds