Wall clock time and date at job start Tue Mar 31 2020 22:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86806 * 120.00182 * 2 1 4 4 H 1.48502 * 109.46625 * 269.99955 * 3 2 1 5 5 H 1.48498 * 109.47027 * 29.99695 * 3 2 1 6 6 H 1.48501 * 109.47218 * 149.99983 * 3 2 1 7 7 C 1.38796 * 120.00098 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00182 * 179.97438 * 7 2 1 9 9 S 1.76203 * 120.00116 * 0.02562 * 7 2 1 10 10 C 1.80992 * 100.00283 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47304 * 179.97438 * 10 9 7 12 12 O 1.21286 * 120.00032 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00278 * 180.02562 * 11 10 9 14 14 C 1.46502 * 119.99949 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.46809 * 179.72518 * 14 13 11 16 16 N 1.46502 * 109.47199 * 179.97438 * 15 14 13 17 17 C 1.34779 * 119.99827 * 83.72018 * 16 15 14 18 18 O 1.21560 * 119.99790 * 185.50614 * 17 16 15 19 19 C 1.47870 * 120.00080 * 5.51029 * 17 16 15 20 20 N 1.34547 * 126.04900 * 353.95263 * 19 17 16 21 21 C 1.30871 * 107.26685 * 179.89762 * 20 19 17 22 22 N 1.34580 * 107.62901 * 0.36571 * 21 20 19 23 23 H 0.96995 * 125.75148 * 179.80522 * 22 21 20 24 24 N 1.28855 * 108.50036 * 359.76410 * 22 21 20 25 25 C 1.46494 * 120.00185 * 263.72434 * 16 15 14 26 26 C 1.52999 * 117.50305 * 196.66817 * 25 16 15 27 27 C 1.53000 * 117.50026 * 128.00661 * 25 16 15 28 28 H 0.96997 * 120.00188 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.46762 * 60.00112 * 10 9 7 30 30 H 1.09000 * 109.47795 * 300.00139 * 10 9 7 31 31 H 0.96998 * 119.99539 * 359.72557 * 13 11 10 32 32 H 1.08997 * 109.47299 * 299.72371 * 14 13 11 33 33 H 1.08996 * 109.47229 * 59.72592 * 14 13 11 34 34 H 1.09010 * 109.47359 * 299.99897 * 15 14 13 35 35 H 1.09000 * 109.47588 * 59.99857 * 15 14 13 36 36 H 1.08005 * 126.18048 * 180.13021 * 21 20 19 37 37 H 1.09004 * 115.54742 * 342.34045 * 25 16 15 38 38 H 1.09001 * 117.49473 * 0.02562 * 26 25 16 39 39 H 1.08997 * 117.50067 * 145.02070 * 26 25 16 40 40 H 1.09001 * 117.50130 * 214.98109 * 27 25 16 41 41 H 1.09004 * 117.49576 * 0.02562 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5157 -3.8914 0.0005 11 6 1.9873 -5.3027 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8440 -6.3431 0.0018 14 6 2.3302 -7.7151 0.0019 15 6 3.5023 -8.6985 -0.0043 16 7 2.9886 -10.0705 -0.0036 17 6 2.6277 -10.6555 -1.1630 18 8 2.1087 -11.7547 -1.1533 19 6 2.8632 -9.9603 -2.4466 20 7 3.3199 -8.7033 -2.5942 21 6 3.3913 -8.4643 -3.8789 22 7 2.9718 -9.5689 -4.5230 23 1 2.9156 -9.6770 -5.4852 24 7 2.6580 -10.4593 -3.6459 25 6 2.8670 -10.8066 1.2571 26 6 2.7064 -12.3259 1.1756 27 6 1.5151 -11.4502 1.5719 28 1 -0.4850 0.8400 -0.0004 29 1 3.1243 -3.7313 0.8906 30 1 3.1244 -3.7314 -0.8894 31 1 3.8008 -6.1835 -0.0022 32 1 1.7252 -7.8765 0.8940 33 1 1.7181 -7.8739 -0.8859 34 1 4.1074 -8.5372 -0.8966 35 1 4.1145 -8.5398 0.8834 36 1 3.7230 -7.5451 -4.3389 37 1 3.4401 -10.4052 2.0930 38 1 2.6917 -12.7779 0.1838 39 1 3.1736 -12.9241 1.9579 40 1 1.1990 -11.4727 2.6149 41 1 0.7163 -11.3263 0.8407 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001721223847.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:12 Heat of formation + Delta-G solvation = 75.547527 kcal Electronic energy + Delta-G solvation = -26422.584918 eV Core-core repulsion = 22468.163646 eV Total energy + Delta-G solvation = -3954.421271 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.87682 -40.58820 -39.03564 -36.80736 -35.79771 -34.03540 -33.31185 -32.42719 -31.71052 -30.05429 -27.77974 -25.74917 -25.46477 -23.43759 -23.00318 -22.54867 -22.34590 -20.43480 -19.94547 -18.76625 -17.89915 -17.28871 -16.80446 -16.56558 -16.07611 -15.92349 -15.67577 -15.24886 -14.92565 -14.83324 -14.79970 -14.11224 -13.93442 -13.78608 -13.18359 -13.11153 -12.67558 -12.53584 -12.45924 -12.06191 -11.66850 -11.52003 -11.28545 -11.06735 -11.02888 -11.01760 -10.76725 -10.69161 -10.40646 -10.18790 -9.97643 -9.81207 -9.37775 -9.06831 -8.79377 -8.73059 -8.21604 -6.49048 -6.21339 -3.91637 0.98823 1.68015 2.02547 2.52426 2.92266 3.09415 3.17383 3.21861 3.27981 3.32103 3.53152 3.73447 3.88596 4.13600 4.20766 4.40767 4.60357 4.68425 4.79939 4.88312 4.94968 5.13736 5.23419 5.26935 5.31679 5.57051 5.58867 5.66504 5.73994 5.79403 5.87689 5.93881 6.10404 6.12987 6.16125 6.31282 6.44339 6.66451 6.90673 7.49806 7.59652 7.78549 7.81270 8.35411 8.69268 9.23898 10.86073 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.016767 B = 0.002379 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.517379 B =11765.064472 C =12830.848599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.062 6.062 10 C -0.151 4.151 11 C 0.532 3.468 12 O -0.519 6.519 13 N -0.729 5.729 14 C 0.119 3.881 15 C 0.090 3.910 16 N -0.562 5.562 17 C 0.618 3.382 18 O -0.509 6.509 19 C 0.145 3.855 20 N -0.476 5.476 21 C 0.204 3.796 22 N -0.399 5.399 23 H 0.453 0.547 24 N -0.248 5.248 25 C 0.069 3.931 26 C -0.191 4.191 27 C -0.184 4.184 28 H 0.268 0.732 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.398 0.602 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.124 0.876 35 H 0.083 0.917 36 H 0.232 0.768 37 H 0.136 0.864 38 H 0.134 0.866 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.749 -21.751 -5.236 25.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.165 5.835 10 C -0.302 4.302 11 C 0.318 3.682 12 O -0.393 6.393 13 N -0.384 5.384 14 C -0.006 4.006 15 C -0.033 4.033 16 N -0.293 5.293 17 C 0.402 3.598 18 O -0.382 6.382 19 C -0.135 4.135 20 N -0.203 5.203 21 C -0.093 4.093 22 N -0.121 5.121 23 H 0.300 0.700 24 N -0.088 5.088 25 C -0.034 4.034 26 C -0.228 4.228 27 C -0.222 4.222 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.231 0.769 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.141 0.859 35 H 0.101 0.899 36 H 0.248 0.752 37 H 0.154 0.846 38 H 0.152 0.848 39 H 0.111 0.889 40 H 0.118 0.882 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 10.137 -23.000 -4.892 25.606 hybrid contribution 2.408 1.790 -0.827 3.112 sum 12.545 -21.210 -5.720 25.297 Atomic orbital electron populations 1.70016 1.05959 1.27426 1.46910 1.24992 0.95014 0.99020 0.94600 0.86176 0.79425 0.81628 0.78307 1.20313 1.20781 1.19690 1.22868 0.94890 0.91682 1.58845 0.90939 1.85434 1.05067 0.96310 1.96707 1.23511 1.06430 0.95394 1.04874 1.20264 0.86499 0.86179 0.75264 1.90711 1.15475 1.85571 1.47573 1.45725 1.09827 1.05074 1.77787 1.21446 0.96095 0.80879 1.02217 1.22267 0.96551 0.78848 1.05651 1.46843 1.63347 1.14294 1.04786 1.16386 0.78457 0.84037 0.80906 1.90696 1.42008 1.19464 1.85994 1.23715 1.05680 0.90712 0.93432 1.71458 1.19608 1.13617 1.15609 1.26830 0.99230 0.94618 0.88671 1.45271 1.45793 1.10031 1.11052 0.69980 1.74344 1.18130 1.17365 0.98915 1.21822 1.02018 0.93038 0.86568 1.23837 1.01385 0.92029 1.05585 1.23303 0.92485 1.04008 1.02427 0.92203 0.89263 0.89253 0.76871 0.92048 0.91622 0.85853 0.89888 0.75197 0.84637 0.84817 0.88914 0.88242 0.88292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.04 13.22 55.49 0.73 -25.31 16 2 C 0.07 2.06 5.49 -17.44 -0.10 1.97 16 3 Si 0.92 21.14 29.55 -169.99 -5.02 16.11 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.53 -15.03 9.50 30.94 0.29 -14.73 16 8 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 10 C -0.15 -2.97 6.16 36.00 0.22 -2.74 16 11 C 0.53 9.79 7.85 -10.99 -0.09 9.70 16 12 O -0.52 -11.97 15.86 5.55 0.09 -11.88 16 13 N -0.73 -9.37 5.56 -60.30 -0.33 -9.70 16 14 C 0.12 1.47 5.54 -4.04 -0.02 1.45 16 15 C 0.09 0.81 5.14 -4.04 -0.02 0.79 16 16 N -0.56 -5.82 2.85 -167.20 -0.48 -6.30 16 17 C 0.62 7.77 7.43 -12.32 -0.09 7.68 16 18 O -0.51 -7.44 12.82 5.31 0.07 -7.37 16 19 C 0.14 1.68 7.53 -156.36 -1.18 0.50 16 20 N -0.48 -4.53 6.79 -12.36 -0.08 -4.62 16 21 C 0.20 1.24 13.14 -90.49 -1.19 0.05 16 22 N -0.40 -2.41 6.93 29.56 0.20 -2.21 16 23 H 0.45 0.82 8.96 -190.21 -1.70 -0.88 16 24 N -0.25 -2.67 12.30 32.07 0.39 -2.27 16 25 C 0.07 0.63 6.61 -67.93 -0.45 0.18 16 26 C -0.19 -1.81 9.63 -26.69 -0.26 -2.07 16 27 C -0.18 -1.81 9.88 -26.69 -0.26 -2.08 16 28 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 29 H 0.09 1.61 8.14 -51.91 -0.42 1.18 16 30 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 31 H 0.40 3.74 8.47 -40.82 -0.35 3.39 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.98 7.25 -51.93 -0.38 0.60 16 34 H 0.12 1.08 5.19 -51.92 -0.27 0.81 16 35 H 0.08 0.56 7.94 -51.93 -0.41 0.15 16 36 H 0.23 0.39 8.06 -52.48 -0.42 -0.04 16 37 H 0.14 0.90 8.04 -51.93 -0.42 0.48 16 38 H 0.13 1.59 5.22 -52.12 -0.27 1.32 16 39 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.10 1.20 7.59 -51.93 -0.39 0.81 16 LS Contribution 365.22 15.07 5.50 5.50 Total: -1.00 -39.47 365.22 -10.55 -50.02 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -6.27 Total: 1.20 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: -3.14 Total: 0.70 kcal Atomic # 7 Polarization: -50.84 SS G_CDS: 0.44 Total: -50.41 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: 0.16 Total: -19.25 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -39.47 -10.55 -50.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721223847.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.567 kcal (2) G-P(sol) polarization free energy of solvation -39.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds