Wall clock time and date at job start Tue Mar 31 2020 22:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86806 * 120.00182 * 2 1 4 4 H 1.48502 * 109.46625 * 269.99955 * 3 2 1 5 5 H 1.48498 * 109.47027 * 29.99695 * 3 2 1 6 6 H 1.48501 * 109.47218 * 149.99983 * 3 2 1 7 7 C 1.38796 * 120.00098 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00182 * 179.97438 * 7 2 1 9 9 S 1.76203 * 120.00116 * 0.02562 * 7 2 1 10 10 C 1.80992 * 100.00283 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47304 * 179.97438 * 10 9 7 12 12 O 1.21286 * 120.00032 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00278 * 180.02562 * 11 10 9 14 14 C 1.46502 * 119.99949 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.46809 * 179.72518 * 14 13 11 16 16 N 1.46502 * 109.47199 * 179.97438 * 15 14 13 17 17 C 1.34779 * 119.99827 * 83.72018 * 16 15 14 18 18 O 1.21560 * 119.99790 * 185.50614 * 17 16 15 19 19 C 1.47870 * 120.00080 * 5.51029 * 17 16 15 20 20 N 1.34547 * 126.04900 * 353.95263 * 19 17 16 21 21 C 1.30871 * 107.26685 * 179.89762 * 20 19 17 22 22 N 1.34580 * 107.62901 * 0.36571 * 21 20 19 23 23 H 0.96995 * 125.75148 * 179.80522 * 22 21 20 24 24 N 1.28855 * 108.50036 * 359.76410 * 22 21 20 25 25 C 1.46494 * 120.00185 * 263.72434 * 16 15 14 26 26 C 1.52999 * 117.50305 * 196.66817 * 25 16 15 27 27 C 1.53000 * 117.50026 * 128.00661 * 25 16 15 28 28 H 0.96997 * 120.00188 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.46762 * 60.00112 * 10 9 7 30 30 H 1.09000 * 109.47795 * 300.00139 * 10 9 7 31 31 H 0.96998 * 119.99539 * 359.72557 * 13 11 10 32 32 H 1.08997 * 109.47299 * 299.72371 * 14 13 11 33 33 H 1.08996 * 109.47229 * 59.72592 * 14 13 11 34 34 H 1.09010 * 109.47359 * 299.99897 * 15 14 13 35 35 H 1.09000 * 109.47588 * 59.99857 * 15 14 13 36 36 H 1.08005 * 126.18048 * 180.13021 * 21 20 19 37 37 H 1.09004 * 115.54742 * 342.34045 * 25 16 15 38 38 H 1.09001 * 117.49473 * 0.02562 * 26 25 16 39 39 H 1.08997 * 117.50067 * 145.02070 * 26 25 16 40 40 H 1.09001 * 117.50130 * 214.98109 * 27 25 16 41 41 H 1.09004 * 117.49576 * 0.02562 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5157 -3.8914 0.0005 11 6 1.9873 -5.3027 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8440 -6.3431 0.0018 14 6 2.3302 -7.7151 0.0019 15 6 3.5023 -8.6985 -0.0043 16 7 2.9886 -10.0705 -0.0036 17 6 2.6277 -10.6555 -1.1630 18 8 2.1087 -11.7547 -1.1533 19 6 2.8632 -9.9603 -2.4466 20 7 3.3199 -8.7033 -2.5942 21 6 3.3913 -8.4643 -3.8789 22 7 2.9718 -9.5689 -4.5230 23 1 2.9156 -9.6770 -5.4852 24 7 2.6580 -10.4593 -3.6459 25 6 2.8670 -10.8066 1.2571 26 6 2.7064 -12.3259 1.1756 27 6 1.5151 -11.4502 1.5719 28 1 -0.4850 0.8400 -0.0004 29 1 3.1243 -3.7313 0.8906 30 1 3.1244 -3.7314 -0.8894 31 1 3.8008 -6.1835 -0.0022 32 1 1.7252 -7.8765 0.8940 33 1 1.7181 -7.8739 -0.8859 34 1 4.1074 -8.5372 -0.8966 35 1 4.1145 -8.5398 0.8834 36 1 3.7230 -7.5451 -4.3389 37 1 3.4401 -10.4052 2.0930 38 1 2.6917 -12.7779 0.1838 39 1 3.1736 -12.9241 1.9579 40 1 1.1990 -11.4727 2.6149 41 1 0.7163 -11.3263 0.8407 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001721223847.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:11 Heat of formation + Delta-G solvation = 46.703941 kcal Electronic energy + Delta-G solvation = -26423.835669 eV Core-core repulsion = 22468.163646 eV Total energy + Delta-G solvation = -3955.672023 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.51266 -41.44500 -40.46264 -37.71240 -36.72854 -35.06675 -34.54510 -34.09815 -32.37989 -31.44453 -28.95185 -27.60021 -26.52992 -24.15247 -23.85277 -23.29406 -23.08016 -21.79263 -20.69893 -19.85903 -19.37341 -18.26852 -17.66952 -17.47186 -17.27199 -17.08052 -16.84110 -16.54064 -16.37007 -15.99826 -15.57483 -15.50399 -15.19548 -14.69960 -14.64583 -14.38755 -13.92326 -13.66359 -13.44636 -13.17140 -13.11982 -12.86050 -12.61400 -12.56760 -12.36782 -12.06916 -11.71404 -11.68957 -11.41245 -11.14256 -11.10613 -10.96557 -10.92544 -10.74908 -10.20768 -10.03728 -9.57835 -8.62137 -8.30800 -6.08368 0.22425 1.08468 1.26528 1.37211 1.45403 1.52522 1.62171 1.70595 1.98520 2.10446 2.30898 2.42440 2.91545 3.00324 3.03541 3.38347 3.46910 3.84171 3.94606 3.98243 4.02061 4.09521 4.14699 4.20859 4.39647 4.53728 4.54871 4.59732 4.78890 4.85222 4.90070 5.02264 5.06729 5.31875 5.35269 5.46079 5.49157 5.66019 5.90107 6.09880 6.23951 6.61919 6.77160 7.04003 7.10736 7.35435 8.78363 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.016767 B = 0.002379 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.517379 B =11765.064472 C =12830.848599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.011 3.989 3 Si 0.998 3.002 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.256 1.256 7 C -0.541 4.541 8 H 0.086 0.914 9 S -0.159 6.159 10 C -0.125 4.125 11 C 0.534 3.466 12 O -0.574 6.574 13 N -0.696 5.696 14 C 0.127 3.873 15 C 0.100 3.900 16 N -0.559 5.559 17 C 0.606 3.394 18 O -0.542 6.542 19 C 0.122 3.878 20 N -0.495 5.495 21 C 0.217 3.783 22 N -0.383 5.383 23 H 0.471 0.529 24 N -0.279 5.279 25 C 0.070 3.930 26 C -0.189 4.189 27 C -0.195 4.195 28 H 0.270 0.730 29 H 0.112 0.888 30 H 0.115 0.885 31 H 0.420 0.580 32 H 0.046 0.954 33 H 0.039 0.961 34 H 0.133 0.867 35 H 0.118 0.882 36 H 0.277 0.723 37 H 0.172 0.828 38 H 0.107 0.893 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.375 -20.813 -5.172 26.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.193 4.193 3 Si 0.820 3.180 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.180 1.180 7 C -0.689 4.689 8 H 0.104 0.896 9 S 0.068 5.932 10 C -0.276 4.276 11 C 0.320 3.680 12 O -0.452 6.452 13 N -0.351 5.351 14 C 0.002 3.998 15 C -0.023 4.023 16 N -0.289 5.289 17 C 0.392 3.608 18 O -0.417 6.417 19 C -0.158 4.158 20 N -0.222 5.222 21 C -0.079 4.079 22 N -0.108 5.108 23 H 0.321 0.679 24 N -0.120 5.120 25 C -0.033 4.033 26 C -0.227 4.227 27 C -0.233 4.233 28 H 0.079 0.921 29 H 0.130 0.870 30 H 0.133 0.867 31 H 0.258 0.742 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.150 0.850 35 H 0.136 0.864 36 H 0.292 0.708 37 H 0.189 0.811 38 H 0.125 0.875 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 13.839 -22.086 -4.849 26.510 hybrid contribution 1.298 1.388 -0.935 2.118 sum 15.137 -20.698 -5.784 26.286 Atomic orbital electron populations 1.70192 1.08057 1.28502 1.48281 1.26136 0.95922 1.03377 0.93887 0.84954 0.78235 0.76021 0.78770 1.19285 1.20666 1.17997 1.23208 0.95398 0.91849 1.58460 0.89638 1.85680 1.11005 0.99453 1.97055 1.23339 1.03277 0.93829 1.07148 1.20093 0.86096 0.86732 0.75047 1.90706 1.17890 1.86160 1.50482 1.45343 1.10377 1.04143 1.75214 1.21400 0.97237 0.80936 1.00271 1.22287 0.95036 0.77102 1.07852 1.46947 1.62582 1.14660 1.04691 1.16758 0.78172 0.83900 0.81984 1.90685 1.43469 1.20917 1.86673 1.23606 1.07222 0.91717 0.93236 1.71371 1.20524 1.12748 1.17588 1.27677 0.97078 0.95365 0.87804 1.45246 1.44595 1.09339 1.11572 0.67866 1.74251 1.19066 1.19197 0.99501 1.22232 1.01412 0.92804 0.86822 1.23748 1.01345 0.92654 1.04923 1.23272 0.92139 1.05342 1.02575 0.92129 0.86967 0.86662 0.74187 0.93544 0.94229 0.84993 0.86359 0.70779 0.81086 0.87532 0.86388 0.86290 0.91555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.73 13.22 21.65 0.29 -55.45 16 2 C 0.01 0.63 5.49 84.86 0.47 1.09 16 3 Si 1.00 42.62 29.55 68.60 2.03 44.65 16 4 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 5 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 6 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 7 C -0.54 -30.10 9.50 67.95 0.65 -29.45 16 8 H 0.09 4.35 7.80 -2.91 -0.02 4.33 16 9 S -0.16 -8.67 20.57 -56.49 -1.16 -9.83 16 10 C -0.12 -4.64 6.16 71.23 0.44 -4.20 16 11 C 0.53 18.98 7.85 87.66 0.69 19.67 16 12 O -0.57 -26.88 15.86 -3.05 -0.05 -26.93 16 13 N -0.70 -16.08 5.56 -463.07 -2.57 -18.66 16 14 C 0.13 2.98 5.54 86.38 0.48 3.46 16 15 C 0.10 1.54 5.14 86.38 0.44 1.99 16 16 N -0.56 -11.09 2.85 -801.17 -2.29 -13.38 16 17 C 0.61 15.66 7.43 86.79 0.64 16.30 16 18 O -0.54 -16.90 12.82 -3.91 -0.05 -16.95 16 19 C 0.12 2.82 7.53 137.13 1.03 3.85 16 20 N -0.50 -8.64 6.79 -193.03 -1.31 -9.95 16 21 C 0.22 2.10 13.14 180.30 2.37 4.47 16 22 N -0.38 -4.08 6.93 -60.38 -0.42 -4.50 16 23 H 0.47 0.91 8.96 -219.80 -1.97 -1.06 16 24 N -0.28 -6.00 12.30 -52.44 -0.65 -6.65 16 25 C 0.07 1.18 6.61 44.99 0.30 1.48 16 26 C -0.19 -3.52 9.63 30.62 0.29 -3.22 16 27 C -0.19 -3.87 9.88 30.62 0.30 -3.57 16 28 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 29 H 0.11 3.69 8.14 -2.39 -0.02 3.67 16 30 H 0.12 3.72 8.14 -2.40 -0.02 3.70 16 31 H 0.42 6.11 8.47 -92.71 -0.79 5.32 16 32 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.04 1.18 7.25 -2.39 -0.02 1.16 16 34 H 0.13 1.94 5.19 -2.38 -0.01 1.92 16 35 H 0.12 1.06 7.94 -2.39 -0.02 1.04 16 36 H 0.28 -0.25 8.06 -2.91 -0.02 -0.27 16 37 H 0.17 1.62 8.04 -2.39 -0.02 1.60 16 38 H 0.11 2.68 5.22 -5.39 -0.03 2.65 16 39 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.07 1.75 7.59 -2.39 -0.02 1.74 16 Total: -1.00 -91.93 365.22 0.26 -91.67 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -1.66 Total: 14.10 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: 8.10 Total: 11.86 kcal Atomic # 7 Polarization: -101.63 SS G_CDS: -6.95 Total: -108.58 kcal Atomic # 8 Polarization: -43.78 SS G_CDS: -0.10 Total: -43.87 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Atomic # 16 Polarization: -8.67 SS G_CDS: -1.16 Total: -9.83 kcal Total: -91.93 0.26 -91.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721223847.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.376 kcal (2) G-P(sol) polarization free energy of solvation -91.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds