Wall clock time and date at job start Tue Mar 31 2020 22:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86807 * 119.99815 * 2 1 4 4 H 1.48509 * 109.46908 * 240.00024 * 3 2 1 5 5 H 1.48496 * 109.47426 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46953 * 120.00336 * 3 2 1 7 7 C 1.38794 * 120.00193 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00455 * 180.02562 * 7 2 1 9 9 S 1.76206 * 119.99924 * 359.97438 * 7 2 1 10 10 C 1.80989 * 100.00010 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47203 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99699 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00080 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99969 * 180.02562 * 13 11 10 15 15 C 1.53945 * 113.73910 * 253.46317 * 14 13 11 16 16 N 1.47812 * 86.03456 * 222.08214 * 15 14 13 17 17 C 1.34779 * 134.45416 * 204.64465 * 16 15 14 18 18 O 1.21278 * 119.99715 * 179.86628 * 17 16 15 19 19 C 1.50699 * 120.00191 * 359.86759 * 17 16 15 20 20 C 1.52996 * 109.46969 * 179.97438 * 19 17 16 21 21 C 1.50699 * 109.46969 * 180.02562 * 20 19 17 22 22 N 1.33240 * 125.53092 * 89.99998 * 21 20 19 23 23 C 1.30833 * 109.83482 * 180.02562 * 22 21 20 24 24 N 1.34431 * 108.07250 * 359.97438 * 23 22 21 25 25 H 0.97005 * 126.82008 * 179.97438 * 24 23 22 26 26 N 1.30716 * 125.52571 * 269.69252 * 21 20 19 27 27 C 1.47575 * 91.05141 * 24.55179 * 16 15 14 28 28 H 0.97004 * 119.99966 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.47307 * 60.00332 * 10 9 7 30 30 H 1.08998 * 109.47675 * 300.00200 * 10 9 7 31 31 H 0.97005 * 120.00161 * 359.72088 * 13 11 10 32 32 H 1.09003 * 112.94203 * 25.05174 * 14 13 11 33 33 H 1.09000 * 113.76882 * 336.34852 * 15 14 13 34 34 H 1.09003 * 113.76806 * 107.74612 * 15 14 13 35 35 H 1.09000 * 109.47100 * 299.99805 * 19 17 16 36 36 H 1.09004 * 109.47130 * 59.99614 * 19 17 16 37 37 H 1.08996 * 109.47447 * 300.00292 * 20 19 17 38 38 H 1.09002 * 109.47431 * 60.00456 * 20 19 17 39 39 H 1.07996 * 125.96057 * 179.97438 * 23 22 21 40 40 H 1.09004 * 113.77027 * 221.15697 * 27 16 15 41 41 H 1.08996 * 113.77596 * 89.75482 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6965 -1.2126 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8913 -0.0005 11 6 1.9873 -5.3027 -0.0012 12 8 0.7910 -5.5022 -0.0011 13 7 2.8441 -6.3430 -0.0008 14 6 2.3303 -7.7151 -0.0019 15 6 2.4872 -8.4367 1.3488 16 7 2.8960 -9.6149 0.5553 17 6 2.8807 -10.9461 0.7657 18 8 3.2903 -11.7002 -0.0914 19 6 2.3548 -11.4976 2.0658 20 6 2.4480 -13.0246 2.0469 21 6 1.9215 -13.5760 3.3468 22 7 0.6556 -13.9149 3.5880 23 6 0.5403 -14.3572 4.8139 24 7 1.7538 -14.3090 5.3905 25 1 1.9777 -14.5731 6.2966 26 7 2.6336 -13.8048 4.4188 27 6 3.3251 -8.7489 -0.5599 28 1 -0.4850 0.8401 0.0004 29 1 3.1244 -3.7313 0.8895 30 1 3.1245 -3.7313 -0.8905 31 1 3.8009 -6.1834 -0.0041 32 1 1.3302 -7.7939 -0.4281 33 1 3.2824 -8.0307 1.9741 34 1 1.5486 -8.5718 1.8863 35 1 2.9482 -11.1071 2.8926 36 1 1.3142 -11.1989 2.1927 37 1 1.8544 -13.4147 1.2202 38 1 3.4885 -13.3236 1.9200 39 1 -0.3707 -14.7009 5.2810 40 1 3.0543 -9.1327 -1.5435 41 1 4.3669 -8.4348 -0.4966 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001721327347.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:28 Heat of formation + Delta-G solvation = 19.245681 kcal Electronic energy + Delta-G solvation = -24863.494006 eV Core-core repulsion = 20906.631303 eV Total energy + Delta-G solvation = -3956.862703 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.08526 -41.64622 -40.34573 -38.86611 -35.30309 -34.90739 -34.54842 -33.02475 -31.89870 -31.15393 -29.41772 -27.63352 -27.38785 -25.93025 -23.67815 -22.89210 -21.77561 -21.16637 -20.09083 -19.72229 -19.26450 -18.25355 -18.02314 -17.53840 -17.11028 -16.84723 -16.63582 -16.39941 -16.16750 -16.12531 -15.73990 -14.90341 -14.82715 -14.58461 -14.25180 -14.18280 -13.83006 -13.74208 -13.50711 -13.29613 -13.13655 -13.12241 -13.08153 -12.84247 -12.60546 -12.34417 -12.22861 -11.72196 -11.20716 -11.10002 -11.08317 -11.07042 -10.88555 -10.66229 -10.23171 -10.16610 -9.82623 -8.62301 -8.31651 -6.08929 0.62834 1.27238 1.45025 1.45908 1.50588 1.54104 1.60816 1.66303 1.83592 1.91334 2.29865 2.39214 3.02665 3.04248 3.33682 3.35953 3.50501 3.68071 3.79015 3.95620 3.98751 4.07736 4.16233 4.27553 4.37494 4.40390 4.47646 4.54605 4.58437 4.62799 4.75585 4.86112 4.94974 4.95369 5.23166 5.35627 5.44573 5.45257 6.22650 6.25548 6.47082 6.57727 7.01068 7.09596 7.10099 7.25666 8.77025 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.022310 B = 0.001600 C = 0.001539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.758834 B =17493.093218 C =18189.678007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.996 3.004 4 H -0.263 1.263 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.546 4.546 8 H 0.084 0.916 9 S -0.152 6.152 10 C -0.131 4.131 11 C 0.540 3.460 12 O -0.561 6.561 13 N -0.699 5.699 14 C 0.113 3.887 15 C 0.094 3.906 16 N -0.645 5.645 17 C 0.542 3.458 18 O -0.578 6.578 19 C -0.115 4.115 20 C -0.006 4.006 21 C 0.219 3.781 22 N -0.580 5.580 23 C 0.277 3.723 24 N -0.476 5.476 25 H 0.458 0.542 26 N -0.343 5.343 27 C 0.105 3.895 28 H 0.270 0.730 29 H 0.114 0.886 30 H 0.111 0.889 31 H 0.422 0.578 32 H 0.106 0.894 33 H 0.116 0.884 34 H 0.095 0.905 35 H 0.109 0.891 36 H 0.107 0.893 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.272 0.728 40 H 0.087 0.913 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.327 -27.250 10.969 30.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.818 3.182 4 H -0.187 1.187 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.694 4.694 8 H 0.102 0.898 9 S 0.075 5.925 10 C -0.282 4.282 11 C 0.326 3.674 12 O -0.438 6.438 13 N -0.354 5.354 14 C 0.007 3.993 15 C -0.030 4.030 16 N -0.381 5.381 17 C 0.334 3.666 18 O -0.458 6.458 19 C -0.155 4.155 20 C -0.047 4.047 21 C -0.063 4.063 22 N -0.309 5.309 23 C -0.021 4.021 24 N -0.195 5.195 25 H 0.307 0.693 26 N -0.173 5.173 27 C -0.017 4.017 28 H 0.079 0.921 29 H 0.132 0.868 30 H 0.130 0.870 31 H 0.260 0.740 32 H 0.124 0.876 33 H 0.133 0.867 34 H 0.113 0.887 35 H 0.127 0.873 36 H 0.125 0.875 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.287 0.713 40 H 0.105 0.895 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 6.907 -27.955 10.341 30.596 hybrid contribution 1.769 1.027 0.620 2.138 sum 8.676 -26.927 10.961 30.340 Atomic orbital electron populations 1.70174 1.07942 1.28591 1.48054 1.26091 0.95916 1.03246 0.93831 0.85040 0.77814 0.75898 0.79470 1.18734 1.20618 1.18653 1.23188 0.95399 0.92081 1.58758 0.89793 1.85588 1.10630 0.99226 1.97065 1.23389 1.03534 0.94167 1.07126 1.20057 0.86197 0.86597 0.74501 1.90714 1.17450 1.85979 1.49702 1.45556 1.10486 1.03837 1.75474 1.22916 0.99523 0.79850 0.97057 1.23971 1.02320 0.81047 0.95639 1.49783 1.63329 1.03927 1.21058 1.20501 0.77196 0.79909 0.89041 1.90710 1.49950 1.57473 1.47655 1.21426 1.04267 0.95026 0.94821 1.19534 1.02245 0.93423 0.89449 1.24254 0.88092 0.98073 0.95914 1.70440 1.20297 1.22565 1.17630 1.27061 0.92410 0.93901 0.88740 1.48106 1.06573 1.49650 1.15177 0.69272 1.77937 1.17420 1.22290 0.99676 1.23604 0.99974 0.85849 0.92299 0.92073 0.86766 0.87035 0.73958 0.87551 0.86655 0.88657 0.87261 0.87510 0.89137 0.89235 0.71294 0.89501 0.86554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.99 13.22 21.65 0.29 -54.71 16 2 C 0.01 0.78 5.49 84.86 0.47 1.24 16 3 Si 1.00 42.56 29.55 68.60 2.03 44.59 16 4 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 5 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 6 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 7 C -0.55 -30.20 9.50 67.95 0.65 -29.55 16 8 H 0.08 4.26 7.80 -2.91 -0.02 4.24 16 9 S -0.15 -8.09 20.57 -56.49 -1.16 -9.25 16 10 C -0.13 -4.68 6.16 71.24 0.44 -4.24 16 11 C 0.54 17.36 7.85 87.66 0.69 18.05 16 12 O -0.56 -23.63 15.48 -3.03 -0.05 -23.68 16 13 N -0.70 -13.65 5.37 -447.39 -2.40 -16.05 16 14 C 0.11 2.04 4.40 46.75 0.21 2.25 16 15 C 0.09 1.34 8.43 86.44 0.73 2.07 16 16 N -0.65 -11.22 3.61 -836.57 -3.02 -14.24 16 17 C 0.54 11.34 8.06 87.66 0.71 12.05 16 18 O -0.58 -16.39 16.71 -3.02 -0.05 -16.44 16 19 C -0.11 -1.83 5.43 29.85 0.16 -1.67 16 20 C -0.01 -0.11 5.13 29.85 0.15 0.04 16 21 C 0.22 4.13 7.39 138.63 1.03 5.16 16 22 N -0.58 -10.10 11.19 -191.80 -2.15 -12.24 16 23 C 0.28 2.25 13.13 180.36 2.37 4.62 16 24 N -0.48 -4.20 7.45 -60.49 -0.45 -4.65 16 25 H 0.46 0.46 8.96 -213.09 -1.91 -1.45 16 26 N -0.34 -6.09 12.80 -51.33 -0.66 -6.74 16 27 C 0.11 1.58 8.59 86.49 0.74 2.33 16 28 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 29 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 30 H 0.11 3.55 8.14 -2.40 -0.02 3.53 16 31 H 0.42 5.08 8.71 -92.70 -0.81 4.28 16 32 H 0.11 2.50 7.50 -2.39 -0.02 2.48 16 33 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.10 1.34 8.14 -2.39 -0.02 1.33 16 35 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.09 1.81 8.10 -2.39 -0.02 1.79 16 38 H 0.09 1.69 8.10 -2.39 -0.02 1.67 16 39 H 0.27 -0.94 8.06 -2.91 -0.02 -0.97 16 40 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.12 1.18 8.11 -2.39 -0.02 1.16 16 Total: -1.00 -89.38 377.48 -0.92 -90.30 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -1.63 Total: 10.76 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: 8.33 Total: 12.35 kcal Atomic # 7 Polarization: -100.24 SS G_CDS: -8.39 Total: -108.63 kcal Atomic # 8 Polarization: -40.02 SS G_CDS: -0.10 Total: -40.11 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Atomic # 16 Polarization: -8.09 SS G_CDS: -1.16 Total: -9.25 kcal Total: -89.38 -0.92 -90.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721327347.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.545 kcal (2) G-P(sol) polarization free energy of solvation -89.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds