Wall clock time and date at job start Tue Mar 31 2020 22:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86809 * 119.99833 * 2 1 4 4 H 1.48500 * 109.47022 * 239.99859 * 3 2 1 5 5 H 1.48500 * 109.46787 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47071 * 119.99620 * 3 2 1 7 7 C 1.38795 * 120.00385 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00131 * 180.02562 * 7 2 1 9 9 S 1.76200 * 119.99866 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00233 * 180.02562 * 9 7 2 11 11 C 1.50693 * 109.47180 * 180.02562 * 10 9 7 12 12 O 1.21284 * 120.00456 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00090 * 179.97438 * 11 10 9 14 14 C 1.46504 * 120.00064 * 179.97438 * 13 11 10 15 15 C 1.53495 * 114.20428 * 155.00342 * 14 13 11 16 16 N 1.47066 * 87.98658 * 87.51928 * 15 14 13 17 17 C 1.34780 * 136.06263 * 206.86221 * 16 15 14 18 18 O 1.21282 * 119.99658 * 359.97438 * 17 16 15 19 19 C 1.50700 * 120.00120 * 180.02562 * 17 16 15 20 20 C 1.53003 * 109.46948 * 179.97438 * 19 17 16 21 21 C 1.50697 * 109.47315 * 180.02562 * 20 19 17 22 22 C 1.35342 * 126.91177 * 84.99960 * 21 20 19 23 23 N 1.33773 * 106.49829 * 179.97438 * 22 21 20 24 24 N 1.28635 * 108.88594 * 0.02562 * 23 22 21 25 25 N 1.28719 * 110.17703 * 359.75045 * 24 23 22 26 26 H 0.96994 * 125.87429 * 180.23633 * 25 24 23 27 27 C 1.47067 * 87.88528 * 27.11900 * 16 15 14 28 28 H 0.96999 * 120.00159 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.46848 * 59.99924 * 10 9 7 30 30 H 1.09000 * 109.46820 * 299.99938 * 10 9 7 31 31 H 0.96994 * 119.99541 * 0.02562 * 13 11 10 32 32 H 1.08994 * 113.28068 * 21.93803 * 14 13 11 33 33 H 1.09005 * 113.46950 * 332.74494 * 15 14 13 34 34 H 1.08994 * 113.52293 * 202.30979 * 15 14 13 35 35 H 1.08990 * 109.46997 * 299.99606 * 19 17 16 36 36 H 1.09001 * 109.47038 * 60.00166 * 19 17 16 37 37 H 1.08997 * 109.47259 * 300.00495 * 20 19 17 38 38 H 1.09008 * 109.46812 * 59.99730 * 20 19 17 39 39 H 1.07997 * 126.75412 * 359.94862 * 22 21 20 40 40 H 1.09007 * 113.46858 * 87.65629 * 27 16 15 41 41 H 1.08993 * 113.47208 * 218.09965 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1041 1.6965 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6966 1.2125 7 6 2.0104 -1.2019 0.0005 8 1 3.0903 -1.2019 0.0010 9 16 1.1294 -2.7279 0.0005 10 6 2.5160 -3.8914 0.0021 11 6 1.9876 -5.3026 0.0017 12 8 0.7913 -5.5023 0.0000 13 7 2.8443 -6.3430 0.0022 14 6 2.3306 -7.7150 0.0024 15 6 3.2984 -8.7495 -0.5887 16 7 3.8890 -8.8859 0.7512 17 6 5.0916 -9.2329 1.2511 18 8 5.9972 -9.5298 0.5010 19 6 5.3106 -9.2532 2.7419 20 6 6.7498 -9.6784 3.0402 21 6 6.9687 -9.6993 4.5311 22 6 6.6862 -10.7149 5.3799 23 7 7.0416 -10.2995 6.6009 24 7 7.5123 -9.1056 6.5138 25 7 7.4917 -8.7083 5.2897 26 1 7.7966 -7.8461 4.9667 27 6 2.5879 -8.4832 1.3061 28 1 -0.4850 0.8400 -0.0004 29 1 3.1239 -3.7309 0.8925 30 1 3.1253 -3.7317 -0.8875 31 1 3.8011 -6.1833 0.0032 32 1 1.3099 -7.7929 -0.3720 33 1 3.9847 -8.3309 -1.3249 34 1 2.8051 -9.6557 -0.9399 35 1 5.1338 -8.2576 3.1487 36 1 4.6205 -9.9611 3.2009 37 1 6.9262 -10.6741 2.6334 38 1 7.4402 -8.9708 2.5811 39 1 6.2578 -11.6723 5.1224 40 1 1.9044 -9.3183 1.4600 41 1 2.6699 -7.8383 2.1810 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001721327365.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:32 Heat of formation + Delta-G solvation = 59.084699 kcal Electronic energy + Delta-G solvation = -25365.487193 eV Core-core repulsion = 21410.352040 eV Total energy + Delta-G solvation = -3955.135153 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.74385 -41.08938 -39.28741 -38.09258 -34.94728 -33.69683 -33.58919 -32.49730 -31.00753 -29.89095 -28.51831 -26.59523 -25.57685 -25.18326 -23.41006 -22.42794 -21.78691 -20.70226 -19.30255 -18.74273 -18.00386 -17.48223 -16.93134 -16.66340 -16.21516 -16.07330 -16.05414 -15.12938 -15.00693 -14.86549 -14.65285 -14.49923 -13.98712 -13.50982 -13.41400 -13.28862 -13.20047 -12.94227 -12.61359 -12.37452 -12.21778 -12.04943 -11.86798 -11.36331 -11.29193 -11.12087 -11.09294 -11.02878 -10.83738 -10.31699 -9.90872 -9.66847 -9.62505 -9.26392 -9.14146 -9.09631 -8.34329 -6.58925 -6.28555 -4.00174 1.06702 2.09200 2.14527 2.25435 2.41243 2.80465 2.82632 3.18594 3.21230 3.24523 3.52001 3.71336 4.00950 4.11570 4.13598 4.26391 4.32390 4.44127 4.53614 4.69490 4.87726 4.89514 4.93649 4.95604 4.97990 5.06805 5.10200 5.22219 5.30790 5.37585 5.39425 5.41929 5.66842 5.66992 5.75391 6.01743 6.36033 6.38359 7.22785 7.46472 7.52648 7.66971 8.00611 8.27886 8.38341 9.16852 10.78733 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011341 B = 0.002118 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.319153 B =13215.946381 C =14907.265182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.538 4.538 8 H 0.072 0.928 9 S -0.057 6.057 10 C -0.154 4.154 11 C 0.537 3.463 12 O -0.511 6.511 13 N -0.719 5.719 14 C 0.113 3.887 15 C 0.095 3.905 16 N -0.648 5.648 17 C 0.544 3.456 18 O -0.540 6.540 19 C -0.132 4.132 20 C -0.032 4.032 21 C -0.009 4.009 22 C -0.045 4.045 23 N -0.266 5.266 24 N -0.079 5.079 25 N -0.388 5.388 26 H 0.449 0.551 27 C 0.081 3.919 28 H 0.270 0.730 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.401 0.599 32 H 0.130 0.870 33 H 0.085 0.915 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.088 0.912 39 H 0.191 0.809 40 H 0.100 0.900 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.599 -21.706 3.952 24.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.686 4.686 8 H 0.090 0.910 9 S 0.169 5.831 10 C -0.305 4.305 11 C 0.324 3.676 12 O -0.385 6.385 13 N -0.373 5.373 14 C 0.006 3.994 15 C -0.029 4.029 16 N -0.384 5.384 17 C 0.334 3.666 18 O -0.417 6.417 19 C -0.172 4.172 20 C -0.072 4.072 21 C -0.143 4.143 22 C -0.202 4.202 23 N -0.133 5.133 24 N -0.060 5.060 25 N -0.109 5.109 26 H 0.295 0.705 27 C -0.043 4.043 28 H 0.080 0.920 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.235 0.765 32 H 0.147 0.853 33 H 0.103 0.897 34 H 0.118 0.882 35 H 0.113 0.887 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.107 0.893 39 H 0.208 0.792 40 H 0.118 0.882 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.460 -21.890 5.180 24.808 hybrid contribution 2.311 1.582 -1.223 3.056 sum 12.771 -20.309 3.956 24.314 Atomic orbital electron populations 1.69998 1.05944 1.27677 1.46584 1.24991 0.95042 0.99050 0.94434 0.86222 0.79255 0.81201 0.78822 1.19910 1.20756 1.19936 1.22809 0.94858 0.91595 1.59330 0.90964 1.85394 1.04588 0.96331 1.96751 1.23536 1.06819 0.95075 1.05058 1.20385 0.86458 0.86209 0.74563 1.90715 1.15241 1.85452 1.47051 1.45647 1.10087 1.04039 1.77487 1.22083 0.99735 0.81961 0.95666 1.23438 0.94138 0.98397 0.86886 1.49740 1.09917 1.68125 1.10601 1.20091 0.80428 0.75682 0.90417 1.90746 1.41462 1.48629 1.60899 1.21604 0.98174 1.04690 0.92740 1.19871 0.96020 1.05520 0.85809 1.22282 1.04758 0.90545 0.96757 1.23464 1.06575 1.01389 0.88816 1.75136 1.12541 1.03145 1.22450 1.78343 1.19307 1.08592 0.99734 1.45192 1.42809 1.16420 1.06467 0.70548 1.23715 0.82860 0.98313 0.99437 0.92047 0.89183 0.89052 0.76471 0.85279 0.89663 0.88172 0.88661 0.88028 0.87734 0.89328 0.79162 0.88233 0.89662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.44 13.22 55.49 0.73 -24.71 16 2 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 20.84 29.55 -169.99 -5.02 15.82 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.54 -14.78 9.50 30.94 0.29 -14.49 16 8 H 0.07 1.87 7.80 -52.49 -0.41 1.47 16 9 S -0.06 -1.47 20.57 -107.50 -2.21 -3.68 16 10 C -0.15 -2.84 6.16 36.00 0.22 -2.62 16 11 C 0.54 8.70 7.85 -10.99 -0.09 8.62 16 12 O -0.51 -10.20 15.45 5.55 0.09 -10.11 16 13 N -0.72 -7.83 5.39 -53.62 -0.29 -8.12 16 14 C 0.11 0.94 4.61 -67.81 -0.31 0.63 16 15 C 0.09 0.65 8.38 -8.51 -0.07 0.58 16 16 N -0.65 -4.75 3.69 -185.24 -0.68 -5.43 16 17 C 0.54 4.47 8.08 -10.98 -0.09 4.38 16 18 O -0.54 -6.36 16.76 5.56 0.09 -6.27 16 19 C -0.13 -0.66 5.51 -27.88 -0.15 -0.82 16 20 C -0.03 -0.16 5.07 -27.88 -0.14 -0.30 16 21 C -0.01 -0.06 6.56 -82.09 -0.54 -0.59 16 22 C -0.05 -0.33 11.99 -17.74 -0.21 -0.55 16 23 N -0.27 -2.84 12.41 30.23 0.38 -2.47 16 24 N -0.08 -0.80 13.38 60.35 0.81 0.01 16 25 N -0.39 -2.52 6.98 33.54 0.23 -2.28 16 26 H 0.45 1.45 8.96 -190.40 -1.71 -0.26 16 27 C 0.08 0.51 8.23 -8.51 -0.07 0.44 16 28 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 29 H 0.09 1.53 8.14 -51.91 -0.42 1.10 16 30 H 0.09 1.57 8.14 -51.92 -0.42 1.14 16 31 H 0.40 3.70 8.76 -40.82 -0.36 3.34 16 32 H 0.13 1.17 7.45 -51.93 -0.39 0.78 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.10 0.50 8.10 -51.93 -0.42 0.08 16 38 H 0.09 0.43 8.10 -51.92 -0.42 0.01 16 39 H 0.19 0.84 8.06 -52.49 -0.42 0.42 16 40 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 376.83 15.07 5.68 5.68 Total: -1.00 -37.89 376.83 -8.10 -45.98 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -6.64 Total: -1.66 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: -1.26 Total: -2.75 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: 1.18 Total: -43.01 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: 0.18 Total: -16.38 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: -1.47 SS G_CDS: -2.21 Total: -3.68 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -37.89 -8.10 -45.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721327365.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.068 kcal (2) G-P(sol) polarization free energy of solvation -37.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds