Wall clock time and date at job start Tue Mar 31 2020 22:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86799 * 120.00001 * 2 1 4 4 H 1.48496 * 109.47263 * 270.00381 * 3 2 1 5 5 H 1.48504 * 109.47189 * 29.99939 * 3 2 1 6 6 H 1.48497 * 109.47133 * 150.00066 * 3 2 1 7 7 C 1.38795 * 120.00022 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00050 * 359.97438 * 7 2 1 9 9 S 1.76201 * 120.00046 * 179.97438 * 7 2 1 10 10 C 1.81000 * 100.00336 * 179.97438 * 9 7 2 11 11 C 1.50692 * 109.47129 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00478 * 359.97438 * 11 10 9 13 13 N 1.34785 * 119.99938 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00016 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.46985 * 179.97438 * 14 13 11 16 16 C 1.53500 * 114.20717 * 184.99871 * 15 14 13 17 17 N 1.47066 * 87.98253 * 220.15020 * 16 15 14 18 18 C 1.34774 * 136.05240 * 207.08405 * 17 16 15 19 19 O 1.21279 * 120.00472 * 0.02562 * 18 17 16 20 20 C 1.50706 * 120.00020 * 180.02562 * 18 17 16 21 21 N 1.46496 * 109.47106 * 179.97438 * 20 18 17 22 22 N 1.28595 * 124.62089 * 269.69268 * 21 20 18 23 23 C 1.31374 * 108.72111 * 179.83027 * 22 21 20 24 24 C 1.39674 * 105.90095 * 0.42070 * 23 22 21 25 25 N 1.28607 * 124.62005 * 90.00100 * 21 20 18 26 26 C 1.47068 * 87.88844 * 27.34268 * 17 16 15 27 27 H 0.96998 * 119.99795 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.46852 * 59.99782 * 10 9 7 29 29 H 1.08998 * 109.46685 * 300.00357 * 10 9 7 30 30 H 0.97002 * 119.99732 * 359.97438 * 13 11 10 31 31 H 1.09002 * 109.46923 * 60.00097 * 14 13 11 32 32 H 1.08997 * 109.46889 * 299.99866 * 14 13 11 33 33 H 1.09005 * 113.28415 * 318.06956 * 15 14 13 34 34 H 1.08995 * 113.46360 * 105.37082 * 16 15 14 35 35 H 1.08999 * 113.51829 * 334.93658 * 16 15 14 36 36 H 1.09001 * 109.46953 * 299.99667 * 20 18 17 37 37 H 1.09000 * 109.47318 * 59.99264 * 20 18 17 38 38 H 1.08001 * 127.05287 * 180.15932 * 23 22 21 39 39 H 1.08004 * 127.05420 * 179.76701 * 24 23 22 40 40 H 1.08998 * 113.46458 * 87.43503 * 26 17 16 41 41 H 1.08996 * 113.46737 * 217.87850 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1373 -0.0005 9 16 3.7723 -1.2020 -0.0012 10 6 4.0867 -2.9845 -0.0009 11 6 5.5731 -3.2324 -0.0021 12 8 6.3441 -2.2962 -0.0035 13 7 6.0458 -4.4946 -0.0026 14 6 7.4909 -4.7356 -0.0032 15 6 7.7566 -6.2424 -0.0031 16 6 9.2394 -6.6200 0.1184 17 7 8.9964 -7.6818 -0.8697 18 6 9.5414 -8.8796 -1.1609 19 8 10.4770 -9.2945 -0.5103 20 6 8.9881 -9.7035 -2.2951 21 7 9.7469 -10.9516 -2.4074 22 7 10.7946 -11.1065 -3.1367 23 6 11.2235 -12.3409 -3.0018 24 6 10.3358 -12.9601 -2.1189 25 7 9.4526 -12.0432 -1.7945 26 6 7.9012 -6.8586 -1.4043 27 1 -0.4850 0.8400 -0.0004 28 1 3.6434 -3.4317 -0.8907 29 1 3.6441 -3.4313 0.8893 30 1 5.4292 -5.2434 -0.0019 31 1 7.9341 -4.2888 0.8868 32 1 7.9334 -4.2883 -0.8932 33 1 7.0981 -6.7960 0.6663 34 1 9.5117 -6.9981 1.1037 35 1 9.9166 -5.8432 -0.2369 36 1 7.9399 -9.9313 -2.1010 37 1 9.0717 -9.1428 -3.2260 38 1 12.0835 -12.7869 -3.4792 39 1 10.3688 -13.9829 -1.7735 40 1 8.2249 -6.1442 -2.1613 41 1 7.0336 -7.4399 -1.7162 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001721381975.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:00 Heat of formation + Delta-G solvation = 89.242124 kcal Electronic energy + Delta-G solvation = -24990.159310 eV Core-core repulsion = 21036.331881 eV Total energy + Delta-G solvation = -3953.827429 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.94071 -41.14344 -39.39286 -38.52417 -34.74803 -34.24380 -32.80248 -32.48184 -31.52094 -29.79986 -28.48461 -26.66301 -25.92946 -25.54897 -23.28646 -22.51077 -21.41468 -20.60994 -19.75802 -18.23279 -18.01980 -17.87097 -16.94524 -16.65431 -16.47153 -16.05251 -15.88425 -15.42805 -15.29884 -15.00648 -14.82835 -14.61149 -14.06170 -13.93940 -13.57183 -13.34680 -13.21611 -12.94801 -12.84156 -12.72592 -12.04206 -12.02712 -11.91199 -11.31758 -11.23383 -11.19265 -11.04597 -10.77474 -10.70697 -10.65007 -9.90462 -9.74316 -9.64507 -9.39664 -9.13927 -9.03652 -8.55686 -6.97166 -6.33113 -4.05509 1.23645 1.65137 1.86957 2.12634 2.28126 2.67560 2.86622 3.17594 3.29710 3.46688 3.49772 3.58338 3.69448 3.72925 4.21908 4.26886 4.29056 4.36773 4.40271 4.60483 4.65134 4.70302 4.74066 4.81488 4.94236 5.01928 5.06065 5.07973 5.16854 5.32000 5.45703 5.57898 5.67954 5.70010 5.78369 5.94101 6.18075 6.36315 6.96395 7.38399 7.46338 7.89782 7.91595 8.36760 8.37507 9.13010 10.76045 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.034891 B = 0.001534 C = 0.001498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.313866 B =18245.707219 C =18691.094953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.523 4.523 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.125 4.125 11 C 0.531 3.469 12 O -0.518 6.518 13 N -0.737 5.737 14 C 0.133 3.867 15 C -0.135 4.135 16 C 0.117 3.883 17 N -0.647 5.647 18 C 0.533 3.467 19 O -0.519 6.519 20 C 0.131 3.869 21 N -0.148 5.148 22 N -0.282 5.282 23 C -0.022 4.022 24 C -0.022 4.022 25 N -0.281 5.281 26 C 0.098 3.902 27 H 0.271 0.729 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.401 0.599 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.116 0.884 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.199 0.801 39 H 0.200 0.800 40 H 0.098 0.902 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.857 -23.746 -5.190 30.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.275 4.275 11 C 0.317 3.683 12 O -0.392 6.392 13 N -0.392 5.392 14 C 0.009 3.991 15 C -0.154 4.154 16 C -0.005 4.005 17 N -0.383 5.383 18 C 0.320 3.680 19 O -0.394 6.394 20 C 0.006 3.994 21 N -0.048 5.048 22 N -0.123 5.123 23 C -0.206 4.206 24 C -0.206 4.206 25 N -0.122 5.122 26 C -0.025 4.025 27 H 0.081 0.919 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.235 0.765 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.134 0.866 34 H 0.104 0.896 35 H 0.113 0.887 36 H 0.156 0.844 37 H 0.156 0.844 38 H 0.216 0.784 39 H 0.216 0.784 40 H 0.116 0.884 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 19.867 -21.341 -4.794 29.549 hybrid contribution -0.585 -1.538 -0.128 1.650 sum 19.282 -22.879 -4.922 30.323 Atomic orbital electron populations 1.69937 1.05924 1.27808 1.47936 1.24711 0.94446 0.98970 0.93134 0.86736 0.81888 0.83292 0.79939 1.19203 1.19916 1.15934 1.22308 0.88229 0.97546 1.58951 0.89373 1.84811 1.09350 0.99964 1.97438 1.23277 0.93895 1.04499 1.05862 1.20295 0.90644 0.82195 0.75153 1.90714 1.58774 1.42203 1.47507 1.45931 1.07091 1.08201 1.78023 1.21143 0.82251 0.92445 1.03293 1.23289 0.97768 0.96579 0.97797 1.22987 0.95873 0.87800 0.93867 1.49450 1.36230 1.16185 1.36478 1.19968 0.82746 0.80485 0.84848 1.90816 1.27435 1.70038 1.51071 1.21548 0.96408 0.80645 1.00754 1.47292 1.18894 1.08861 1.29725 1.74052 1.01463 1.20920 1.15822 1.24824 1.03136 0.90074 1.02535 1.24829 0.93976 1.00882 1.00889 1.74061 1.25934 0.93869 1.18306 1.23423 0.89363 0.92542 0.97131 0.91908 0.88443 0.88404 0.76528 0.90578 0.90780 0.86589 0.89630 0.88738 0.84388 0.84386 0.78371 0.78361 0.88399 0.89486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.98 13.97 55.49 0.78 -25.21 16 2 C 0.10 2.75 5.50 -17.43 -0.10 2.65 16 3 Si 0.86 21.25 27.74 -169.99 -4.71 16.54 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.24 -5.82 6.74 56.52 0.38 -5.44 16 7 C -0.52 -14.60 10.04 30.94 0.31 -14.29 16 8 H 0.09 2.56 8.03 -52.49 -0.42 2.14 16 9 S -0.14 -3.44 18.55 -107.50 -1.99 -5.43 16 10 C -0.12 -2.19 6.16 36.00 0.22 -1.97 16 11 C 0.53 8.22 7.85 -10.99 -0.09 8.14 16 12 O -0.52 -10.16 15.86 5.56 0.09 -10.07 16 13 N -0.74 -7.04 5.56 -60.29 -0.33 -7.37 16 14 C 0.13 0.98 5.59 -4.04 -0.02 0.96 16 15 C -0.13 -0.60 4.11 -89.97 -0.37 -0.97 16 16 C 0.12 0.68 8.19 -8.49 -0.07 0.61 16 17 N -0.65 -4.23 3.69 -185.03 -0.68 -4.91 16 18 C 0.53 4.91 8.15 -10.98 -0.09 4.83 16 19 O -0.52 -7.39 17.21 5.56 0.10 -7.30 16 20 C 0.13 0.85 6.85 -5.19 -0.04 0.81 16 21 N -0.15 -1.47 3.44 -11.66 -0.04 -1.51 16 22 N -0.28 -2.92 12.05 30.67 0.37 -2.55 16 23 C -0.02 -0.17 12.20 -17.21 -0.21 -0.38 16 24 C -0.02 -0.17 12.20 -17.21 -0.21 -0.38 16 25 N -0.28 -2.91 12.05 30.67 0.37 -2.54 16 26 C 0.10 0.35 8.00 -8.36 -0.07 0.28 16 27 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 28 H 0.10 1.57 8.14 -51.91 -0.42 1.14 16 29 H 0.10 1.60 8.14 -51.92 -0.42 1.17 16 30 H 0.40 2.63 8.47 -40.82 -0.35 2.28 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.58 7.81 -51.93 -0.41 0.17 16 33 H 0.12 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.09 0.48 8.11 -51.93 -0.42 0.06 16 36 H 0.14 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.14 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.20 0.75 8.06 -52.49 -0.42 0.33 16 39 H 0.20 0.76 8.06 -52.48 -0.42 0.33 16 40 H 0.10 0.30 7.88 -51.93 -0.41 -0.11 16 41 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 LS Contribution 375.75 15.07 5.66 5.66 Total: -1.00 -40.70 375.75 -6.52 -47.21 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: -5.39 Total: -2.81 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: -0.72 Total: 0.28 kcal Atomic # 7 Polarization: -44.54 SS G_CDS: 0.46 Total: -44.09 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: 0.18 Total: -17.37 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.71 Total: 16.54 kcal Atomic # 16 Polarization: -3.44 SS G_CDS: -1.99 Total: -5.43 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -40.70 -6.52 -47.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721381975.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.456 kcal (2) G-P(sol) polarization free energy of solvation -40.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds