Wall clock time and date at job start Tue Mar 31 2020 22:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86799 * 120.00001 * 2 1 4 4 H 1.48496 * 109.47263 * 270.00381 * 3 2 1 5 5 H 1.48504 * 109.47189 * 29.99939 * 3 2 1 6 6 H 1.48497 * 109.47133 * 150.00066 * 3 2 1 7 7 C 1.38795 * 120.00022 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00050 * 359.97438 * 7 2 1 9 9 S 1.76201 * 120.00046 * 179.97438 * 7 2 1 10 10 C 1.81000 * 100.00336 * 179.97438 * 9 7 2 11 11 C 1.50692 * 109.47129 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00478 * 359.97438 * 11 10 9 13 13 N 1.34785 * 119.99938 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00016 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.46985 * 179.97438 * 14 13 11 16 16 C 1.53500 * 114.20717 * 184.99871 * 15 14 13 17 17 N 1.47066 * 87.98253 * 220.15020 * 16 15 14 18 18 C 1.34774 * 136.05240 * 207.08405 * 17 16 15 19 19 O 1.21279 * 120.00472 * 0.02562 * 18 17 16 20 20 C 1.50706 * 120.00020 * 180.02562 * 18 17 16 21 21 N 1.46496 * 109.47106 * 179.97438 * 20 18 17 22 22 N 1.28595 * 124.62089 * 269.69268 * 21 20 18 23 23 C 1.31374 * 108.72111 * 179.83027 * 22 21 20 24 24 C 1.39674 * 105.90095 * 0.42070 * 23 22 21 25 25 N 1.28607 * 124.62005 * 90.00100 * 21 20 18 26 26 C 1.47068 * 87.88844 * 27.34268 * 17 16 15 27 27 H 0.96998 * 119.99795 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.46852 * 59.99782 * 10 9 7 29 29 H 1.08998 * 109.46685 * 300.00357 * 10 9 7 30 30 H 0.97002 * 119.99732 * 359.97438 * 13 11 10 31 31 H 1.09002 * 109.46923 * 60.00097 * 14 13 11 32 32 H 1.08997 * 109.46889 * 299.99866 * 14 13 11 33 33 H 1.09005 * 113.28415 * 318.06956 * 15 14 13 34 34 H 1.08995 * 113.46360 * 105.37082 * 16 15 14 35 35 H 1.08999 * 113.51829 * 334.93658 * 16 15 14 36 36 H 1.09001 * 109.46953 * 299.99667 * 20 18 17 37 37 H 1.09000 * 109.47318 * 59.99264 * 20 18 17 38 38 H 1.08001 * 127.05287 * 180.15932 * 23 22 21 39 39 H 1.08004 * 127.05420 * 179.76701 * 24 23 22 40 40 H 1.08998 * 113.46458 * 87.43503 * 26 17 16 41 41 H 1.08996 * 113.46737 * 217.87850 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1373 -0.0005 9 16 3.7723 -1.2020 -0.0012 10 6 4.0867 -2.9845 -0.0009 11 6 5.5731 -3.2324 -0.0021 12 8 6.3441 -2.2962 -0.0035 13 7 6.0458 -4.4946 -0.0026 14 6 7.4909 -4.7356 -0.0032 15 6 7.7566 -6.2424 -0.0031 16 6 9.2394 -6.6200 0.1184 17 7 8.9964 -7.6818 -0.8697 18 6 9.5414 -8.8796 -1.1609 19 8 10.4770 -9.2945 -0.5103 20 6 8.9881 -9.7035 -2.2951 21 7 9.7469 -10.9516 -2.4074 22 7 10.7946 -11.1065 -3.1367 23 6 11.2235 -12.3409 -3.0018 24 6 10.3358 -12.9601 -2.1189 25 7 9.4526 -12.0432 -1.7945 26 6 7.9012 -6.8586 -1.4043 27 1 -0.4850 0.8400 -0.0004 28 1 3.6434 -3.4317 -0.8907 29 1 3.6441 -3.4313 0.8893 30 1 5.4292 -5.2434 -0.0019 31 1 7.9341 -4.2888 0.8868 32 1 7.9334 -4.2883 -0.8932 33 1 7.0981 -6.7960 0.6663 34 1 9.5117 -6.9981 1.1037 35 1 9.9166 -5.8432 -0.2369 36 1 7.9399 -9.9313 -2.1010 37 1 9.0717 -9.1428 -3.2260 38 1 12.0835 -12.7869 -3.4792 39 1 10.3688 -13.9829 -1.7735 40 1 8.2249 -6.1442 -2.1613 41 1 7.0336 -7.4399 -1.7162 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001721381975.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:59 Heat of formation + Delta-G solvation = 56.305895 kcal Electronic energy + Delta-G solvation = -24991.587532 eV Core-core repulsion = 21036.331881 eV Total energy + Delta-G solvation = -3955.255651 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.52029 -41.69437 -40.49713 -39.26466 -35.72039 -34.81354 -34.64565 -33.42473 -32.33973 -30.85722 -29.16207 -27.84436 -27.05551 -26.52075 -23.85233 -23.12369 -22.02315 -21.68705 -20.32550 -19.82111 -18.73920 -18.54920 -17.82779 -17.61243 -17.28188 -17.08122 -16.73142 -16.67487 -16.27894 -15.98349 -15.68426 -15.43273 -15.22090 -14.91163 -14.78119 -14.41736 -14.17766 -13.74445 -13.58330 -13.42991 -13.31117 -13.10840 -12.97106 -12.63138 -12.60913 -12.41912 -11.85809 -11.83664 -11.71747 -11.43379 -11.36728 -11.14791 -10.95356 -10.49155 -10.30714 -10.06322 -9.94348 -8.95781 -8.49338 -6.19404 0.65334 1.03316 1.15489 1.25639 1.33269 1.49304 1.58693 1.59124 1.63828 1.77732 2.25274 2.29182 2.74702 2.89350 3.06395 3.23533 3.25560 3.77804 3.87531 3.90693 3.97910 4.03530 4.12827 4.18966 4.29316 4.32068 4.53496 4.54574 4.55047 4.58068 4.68306 4.77004 4.83820 5.03066 5.19824 5.31655 5.47361 5.63169 5.72917 6.14071 6.43774 6.54410 6.77156 6.96440 7.27258 7.32296 8.62861 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.034891 B = 0.001534 C = 0.001498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.313866 B =18245.707219 C =18691.094953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.046 3.954 3 Si 0.913 3.087 4 H -0.263 1.263 5 H -0.262 1.262 6 H -0.236 1.236 7 C -0.528 4.528 8 H 0.063 0.937 9 S -0.180 6.180 10 C -0.112 4.112 11 C 0.536 3.464 12 O -0.564 6.564 13 N -0.708 5.708 14 C 0.135 3.865 15 C -0.116 4.116 16 C 0.108 3.892 17 N -0.644 5.644 18 C 0.528 3.472 19 O -0.582 6.582 20 C 0.127 3.873 21 N -0.160 5.160 22 N -0.314 5.314 23 C -0.025 4.025 24 C -0.025 4.025 25 N -0.313 5.313 26 C 0.101 3.899 27 H 0.276 0.724 28 H 0.116 0.884 29 H 0.113 0.887 30 H 0.420 0.580 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.129 0.871 34 H 0.074 0.926 35 H 0.101 0.899 36 H 0.166 0.834 37 H 0.164 0.836 38 H 0.231 0.769 39 H 0.231 0.769 40 H 0.110 0.890 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.476 -24.964 -5.991 32.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.160 4.160 3 Si 0.736 3.264 4 H -0.187 1.187 5 H -0.186 1.186 6 H -0.160 1.160 7 C -0.676 4.676 8 H 0.082 0.918 9 S 0.046 5.954 10 C -0.263 4.263 11 C 0.321 3.679 12 O -0.443 6.443 13 N -0.363 5.363 14 C 0.011 3.989 15 C -0.135 4.135 16 C -0.015 4.015 17 N -0.379 5.379 18 C 0.317 3.683 19 O -0.461 6.461 20 C 0.004 3.996 21 N -0.060 5.060 22 N -0.155 5.155 23 C -0.208 4.208 24 C -0.208 4.208 25 N -0.153 5.153 26 C -0.020 4.020 27 H 0.085 0.915 28 H 0.135 0.865 29 H 0.131 0.869 30 H 0.257 0.743 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.147 0.853 34 H 0.093 0.907 35 H 0.119 0.881 36 H 0.184 0.816 37 H 0.181 0.819 38 H 0.248 0.752 39 H 0.248 0.752 40 H 0.128 0.872 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 20.443 -22.582 -5.606 30.973 hybrid contribution -0.725 -1.332 0.138 1.523 sum 19.718 -23.914 -5.468 31.474 Atomic orbital electron populations 1.70019 1.07325 1.28945 1.49289 1.25551 0.95225 1.02219 0.92966 0.85876 0.80694 0.79693 0.80169 1.18721 1.18638 1.16017 1.22480 0.90388 0.96646 1.58037 0.91848 1.84745 1.06262 1.06770 1.97593 1.23284 0.96230 0.99188 1.07601 1.19884 0.89191 0.83503 0.75293 1.90709 1.59286 1.44020 1.50241 1.45645 1.08609 1.06677 1.75336 1.21239 0.80305 0.94331 1.03070 1.23097 0.96862 0.94553 0.98987 1.23122 0.96996 0.87887 0.93513 1.49516 1.36375 1.15620 1.36396 1.20472 0.82004 0.81018 0.84829 1.90778 1.30316 1.71639 1.53410 1.21882 0.97209 0.79813 1.00683 1.47585 1.19135 1.09468 1.29807 1.74004 1.02270 1.22301 1.16890 1.25469 1.03719 0.89413 1.02152 1.25473 0.93162 1.01923 1.00206 1.74011 1.27295 0.94732 1.19271 1.23646 0.89344 0.92381 0.96596 0.91461 0.86542 0.86860 0.74289 0.91452 0.90598 0.85302 0.90722 0.88088 0.81650 0.81861 0.75237 0.75223 0.87203 0.86523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.73 13.97 21.65 0.30 -54.42 16 2 C 0.05 2.61 5.50 84.86 0.47 3.08 16 3 Si 0.91 43.88 27.74 68.60 1.90 45.78 16 4 H -0.26 -12.29 7.11 99.48 0.71 -11.59 16 5 H -0.26 -11.88 7.11 99.48 0.71 -11.18 16 6 H -0.24 -11.30 6.74 99.48 0.67 -10.63 16 7 C -0.53 -29.64 10.04 67.95 0.68 -28.96 16 8 H 0.06 3.74 8.03 -2.91 -0.02 3.72 16 9 S -0.18 -8.62 18.55 -56.49 -1.05 -9.67 16 10 C -0.11 -3.72 6.16 71.23 0.44 -3.28 16 11 C 0.54 15.39 7.85 87.65 0.69 16.08 16 12 O -0.56 -21.43 15.86 -3.03 -0.05 -21.48 16 13 N -0.71 -11.17 5.56 -463.06 -2.57 -13.74 16 14 C 0.13 1.60 5.59 86.38 0.48 2.09 16 15 C -0.12 -0.67 4.11 -10.37 -0.04 -0.72 16 16 C 0.11 1.08 8.19 83.19 0.68 1.76 16 17 N -0.64 -7.17 3.69 -857.69 -3.16 -10.33 16 18 C 0.53 9.31 8.15 87.66 0.71 10.02 16 19 O -0.58 -16.97 17.21 -3.02 -0.05 -17.02 16 20 C 0.13 1.45 6.85 85.64 0.59 2.04 16 21 N -0.16 -3.06 3.44 -190.80 -0.66 -3.71 16 22 N -0.31 -6.30 12.05 -56.87 -0.69 -6.98 16 23 C -0.02 -0.35 12.20 85.11 1.04 0.69 16 24 C -0.02 -0.35 12.20 85.11 1.04 0.69 16 25 N -0.31 -6.23 12.05 -56.87 -0.69 -6.92 16 26 C 0.10 0.35 8.00 83.27 0.67 1.02 16 27 H 0.28 15.26 8.31 -92.71 -0.77 14.49 16 28 H 0.12 3.45 8.14 -2.39 -0.02 3.43 16 29 H 0.11 3.44 8.14 -2.40 -0.02 3.42 16 30 H 0.42 3.69 8.47 -92.71 -0.79 2.91 16 31 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.08 0.97 7.81 -2.39 -0.02 0.95 16 33 H 0.13 0.52 8.14 -2.38 -0.02 0.50 16 34 H 0.07 0.93 8.14 -2.39 -0.02 0.92 16 35 H 0.10 0.89 8.11 -2.39 -0.02 0.87 16 36 H 0.17 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.16 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.23 1.30 8.06 -2.91 -0.02 1.28 16 39 H 0.23 1.29 8.06 -2.91 -0.02 1.27 16 40 H 0.11 0.23 7.88 -2.39 -0.02 0.21 16 41 H 0.12 -0.19 8.14 -2.39 -0.02 -0.21 16 Total: -1.00 -92.00 375.75 0.98 -91.02 By element: Atomic # 1 Polarization: 2.74 SS G_CDS: 0.25 Total: 2.98 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: 7.44 Total: 4.50 kcal Atomic # 7 Polarization: -88.65 SS G_CDS: -7.46 Total: -96.11 kcal Atomic # 8 Polarization: -38.40 SS G_CDS: -0.10 Total: -38.50 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 1.90 Total: 45.78 kcal Atomic # 16 Polarization: -8.62 SS G_CDS: -1.05 Total: -9.67 kcal Total: -92.00 0.98 -91.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721381975.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.326 kcal (2) G-P(sol) polarization free energy of solvation -92.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds