Wall clock time and date at job start Tue Mar 31 2020 22:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86804 * 119.99619 * 2 1 4 4 H 1.48496 * 109.47342 * 270.00010 * 3 2 1 5 5 H 1.48502 * 109.47141 * 30.00289 * 3 2 1 6 6 H 1.48503 * 109.46769 * 149.99982 * 3 2 1 7 7 C 1.38796 * 120.00229 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00114 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99772 * 359.97438 * 7 2 1 10 10 C 1.80997 * 99.99829 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47357 * 180.02562 * 10 9 7 12 12 O 1.21290 * 119.99769 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00510 * 180.27227 * 11 10 9 14 14 C 1.47069 * 136.05248 * 354.31807 * 13 11 10 15 15 C 1.53758 * 87.88659 * 152.96079 * 14 13 11 16 16 C 1.47063 * 136.05909 * 174.68427 * 13 11 10 17 17 H 1.09005 * 113.46413 * 92.24956 * 16 13 11 18 18 C 1.52994 * 113.47202 * 321.86865 * 16 13 11 19 19 N 1.46493 * 109.47555 * 175.82929 * 18 16 13 20 20 C 1.34773 * 120.00444 * 184.96598 * 19 18 16 21 21 O 1.21280 * 119.99778 * 359.97438 * 20 19 18 22 22 C 1.50700 * 120.00416 * 179.97438 * 20 19 18 23 23 N 1.46502 * 109.47039 * 179.97438 * 22 20 19 24 24 C 1.34428 * 126.81945 * 124.71071 * 23 22 20 25 25 N 1.30835 * 108.07756 * 179.89294 * 24 23 22 26 26 C 1.33234 * 109.82629 * 0.37950 * 25 24 23 27 27 N 1.30718 * 108.95019 * 359.76225 * 26 25 24 28 28 H 0.97000 * 120.00289 * 0.02562 * 1 2 3 29 29 H 1.08992 * 109.47409 * 59.99754 * 10 9 7 30 30 H 1.09006 * 109.46818 * 299.99501 * 10 9 7 31 31 H 1.08999 * 113.46454 * 267.68853 * 14 13 11 32 32 H 1.08996 * 113.46624 * 38.13503 * 14 13 11 33 33 H 1.08998 * 114.39661 * 272.67713 * 15 14 13 34 34 H 1.08995 * 114.26877 * 139.78716 * 15 14 13 35 35 H 1.09001 * 109.46980 * 295.82864 * 18 16 13 36 36 H 1.09001 * 109.46907 * 55.82640 * 18 16 13 37 37 H 0.97008 * 119.99866 * 4.95689 * 19 18 16 38 38 H 1.09001 * 109.46895 * 299.99836 * 22 20 19 39 39 H 1.09000 * 109.47068 * 60.00070 * 22 20 19 40 40 H 1.08008 * 125.96509 * 0.03832 * 24 23 22 41 41 H 1.08007 * 125.52637 * 179.72778 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0466 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4403 0.7001 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1294 -2.7279 -0.0005 10 6 2.5159 -3.8913 -0.0005 11 6 1.9876 -5.3027 -0.0012 12 8 0.7912 -5.5023 -0.0011 13 7 2.8443 -6.3431 0.0043 14 6 4.3019 -6.5150 -0.0897 15 6 4.1422 -7.8198 0.7079 16 6 2.7326 -7.8063 0.1002 17 1 2.6719 -8.3015 -0.8690 18 6 1.6460 -8.2721 1.0713 19 7 1.5429 -9.7327 1.0248 20 6 0.5796 -10.3630 1.7257 21 8 -0.2016 -9.7210 2.3953 22 6 0.4732 -11.8654 1.6773 23 7 -0.6446 -12.3031 2.5172 24 6 -1.6852 -13.0661 2.1401 25 7 -2.4629 -13.2340 3.1787 26 6 -1.9585 -12.5894 4.2299 27 7 -0.8451 -12.0039 3.8746 28 1 -0.4850 0.8400 -0.0004 29 1 3.1245 -3.7313 0.8893 30 1 3.1245 -3.7312 -0.8906 31 1 4.6558 -6.6699 -1.1089 32 1 4.8646 -5.7467 0.4405 33 1 4.1635 -7.6915 1.7900 34 1 4.7715 -8.6383 0.3585 35 1 1.9038 -7.9582 2.0828 36 1 0.6907 -7.8312 0.7863 37 1 2.1679 -10.2462 0.4894 38 1 0.3023 -12.1847 0.6492 39 1 1.3989 -12.3073 2.0460 40 1 -1.8492 -13.4718 1.1526 41 1 -2.3985 -12.5556 5.2157 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001722051383.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:01 Heat of formation + Delta-G solvation = 74.078878 kcal Electronic energy + Delta-G solvation = -25535.898692 eV Core-core repulsion = 21581.413735 eV Total energy + Delta-G solvation = -3954.484957 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.34880 -40.71762 -39.69300 -37.60791 -35.04558 -34.37981 -32.44986 -31.47133 -30.91941 -29.60804 -28.27130 -27.55126 -25.49870 -23.64678 -22.51109 -22.27437 -22.16487 -21.00069 -19.09057 -17.99914 -17.80735 -17.65965 -16.74609 -16.40538 -16.19910 -15.60811 -15.36301 -15.25419 -14.85396 -14.82019 -14.51369 -14.30778 -14.01227 -13.94616 -13.81003 -13.17570 -12.92107 -12.78636 -12.52864 -12.27223 -12.10945 -11.99673 -11.73314 -11.08578 -11.05559 -10.90949 -10.78335 -10.64350 -10.30517 -10.04955 -9.87041 -9.84599 -9.55632 -9.31241 -9.08809 -8.75321 -8.26715 -6.53232 -6.23463 -3.94866 1.29736 1.81547 2.17760 2.42947 2.72914 2.86219 3.00051 3.20828 3.23077 3.28640 3.52280 3.96091 3.96738 4.02078 4.17828 4.19020 4.41126 4.45138 4.56722 4.58969 4.70449 4.85757 4.92677 5.06751 5.11608 5.24042 5.37511 5.47196 5.54393 5.71492 5.78580 5.87005 5.87639 5.89184 6.08821 6.12003 6.15768 6.39477 7.00895 7.57325 7.73092 7.77543 7.81627 8.33009 8.45450 9.21494 10.83933 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018281 B = 0.001962 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.284336 B =14266.060251 C =15427.900366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.920 3.080 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.059 6.059 10 C -0.144 4.144 11 C 0.561 3.439 12 O -0.508 6.508 13 N -0.647 5.647 14 C 0.101 3.899 15 C -0.152 4.152 16 C 0.124 3.876 17 H 0.095 0.905 18 C 0.113 3.887 19 N -0.724 5.724 20 C 0.496 3.504 21 O -0.500 6.500 22 C 0.114 3.886 23 N -0.372 5.372 24 C 0.255 3.745 25 N -0.544 5.544 26 C 0.194 3.806 27 N -0.289 5.289 28 H 0.269 0.731 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.400 0.600 38 H 0.131 0.869 39 H 0.120 0.880 40 H 0.220 0.780 41 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.178 -28.727 -0.458 30.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.294 4.294 11 C 0.351 3.649 12 O -0.381 6.381 13 N -0.388 5.388 14 C -0.022 4.022 15 C -0.190 4.190 16 C 0.019 3.981 17 H 0.113 0.887 18 C -0.011 4.011 19 N -0.378 5.378 20 C 0.279 3.721 21 O -0.372 6.372 22 C -0.013 4.013 23 N -0.164 5.164 24 C -0.042 4.042 25 N -0.271 5.271 26 C -0.109 4.109 27 N -0.116 5.116 28 H 0.079 0.921 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.116 0.884 34 H 0.108 0.892 35 H 0.093 0.907 36 H 0.109 0.891 37 H 0.234 0.766 38 H 0.149 0.851 39 H 0.138 0.862 40 H 0.236 0.764 41 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 7.664 -27.927 0.507 28.964 hybrid contribution 2.386 1.131 -0.710 2.734 sum 10.050 -26.796 -0.202 28.620 Atomic orbital electron populations 1.70019 1.05957 1.27521 1.46690 1.25005 0.95045 0.99063 0.94505 0.86152 0.79396 0.81513 0.78341 1.20256 1.20709 1.19688 1.22845 0.94877 0.91545 1.59137 0.90909 1.85455 1.04723 0.96362 1.96725 1.23467 1.06602 0.94497 1.04875 1.20043 0.85339 0.84958 0.74566 1.90736 1.14781 1.84810 1.47812 1.49768 1.08391 1.04901 1.75692 1.22934 0.82022 0.96918 1.00329 1.23647 0.95707 0.98291 1.01358 1.22746 0.94345 0.82712 0.98310 0.88725 1.21617 1.00976 0.78599 0.99864 1.45705 1.33705 1.08057 1.50319 1.20417 0.81634 0.89502 0.80580 1.90877 1.40593 1.66801 1.38978 1.21548 0.90098 0.93831 0.95827 1.49986 1.19545 1.38532 1.08344 1.26096 0.84526 0.93081 1.00491 1.70533 1.30351 1.26942 0.99233 1.26052 0.91379 0.93782 0.99692 1.78213 1.20569 1.22227 0.90543 0.92127 0.89200 0.89338 0.89671 0.89913 0.88379 0.89201 0.90721 0.89094 0.76619 0.85075 0.86247 0.76409 0.76640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.34 13.22 55.49 0.73 -25.61 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.46 29.55 -169.99 -5.02 16.44 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.54 -15.33 9.50 30.94 0.29 -15.03 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 10 C -0.14 -2.95 5.99 36.01 0.22 -2.73 16 11 C 0.56 10.66 7.97 -10.99 -0.09 10.57 16 12 O -0.51 -11.76 15.46 5.55 0.09 -11.68 16 13 N -0.65 -8.51 3.56 -177.26 -0.63 -9.14 16 14 C 0.10 0.83 8.43 -8.36 -0.07 0.76 16 15 C -0.15 -0.90 8.03 -26.08 -0.21 -1.10 16 16 C 0.12 1.11 4.06 -72.39 -0.29 0.82 16 17 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 18 C 0.11 1.28 5.47 -4.05 -0.02 1.26 16 19 N -0.72 -5.20 5.55 -60.30 -0.33 -5.53 16 20 C 0.50 4.81 7.87 -10.99 -0.09 4.73 16 21 O -0.50 -8.13 15.74 5.56 0.09 -8.05 16 22 C 0.11 0.56 7.03 -5.19 -0.04 0.53 16 23 N -0.37 -3.37 3.41 -63.81 -0.22 -3.59 16 24 C 0.25 1.99 12.63 -90.65 -1.14 0.85 16 25 N -0.54 -5.84 11.19 -15.83 -0.18 -6.02 16 26 C 0.19 2.11 13.03 -91.82 -1.20 0.91 16 27 N -0.29 -3.59 11.82 29.29 0.35 -3.25 16 28 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 29 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 30 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.10 0.65 7.95 -51.93 -0.41 0.23 16 34 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 35 H 0.07 0.96 7.89 -51.93 -0.41 0.55 16 36 H 0.09 1.46 7.15 -51.93 -0.37 1.09 16 37 H 0.40 1.02 8.48 -40.82 -0.35 0.68 16 38 H 0.13 0.04 8.09 -51.93 -0.42 -0.38 16 39 H 0.12 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.22 0.56 8.06 -52.48 -0.42 0.14 16 41 H 0.22 1.63 8.06 -52.48 -0.42 1.20 16 LS Contribution 375.67 15.07 5.66 5.66 Total: -1.00 -43.92 375.67 -9.72 -53.65 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -5.31 Total: -2.60 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: -2.73 Total: 3.55 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: -0.28 Total: -53.13 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: 0.17 Total: -19.72 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -43.92 -9.72 -53.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722051383.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.727 kcal (2) G-P(sol) polarization free energy of solvation -43.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds