Wall clock time and date at job start Tue Mar 31 2020 22:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86804 * 119.99619 * 2 1 4 4 H 1.48496 * 109.47342 * 270.00010 * 3 2 1 5 5 H 1.48502 * 109.47141 * 30.00289 * 3 2 1 6 6 H 1.48503 * 109.46769 * 149.99982 * 3 2 1 7 7 C 1.38796 * 120.00229 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00114 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99772 * 359.97438 * 7 2 1 10 10 C 1.80997 * 99.99829 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47357 * 180.02562 * 10 9 7 12 12 O 1.21290 * 119.99769 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00510 * 180.27227 * 11 10 9 14 14 C 1.47069 * 136.05248 * 354.31807 * 13 11 10 15 15 C 1.53758 * 87.88659 * 152.96079 * 14 13 11 16 16 C 1.47063 * 136.05909 * 174.68427 * 13 11 10 17 17 H 1.09005 * 113.46413 * 92.24956 * 16 13 11 18 18 C 1.52994 * 113.47202 * 321.86865 * 16 13 11 19 19 N 1.46493 * 109.47555 * 175.82929 * 18 16 13 20 20 C 1.34773 * 120.00444 * 184.96598 * 19 18 16 21 21 O 1.21280 * 119.99778 * 359.97438 * 20 19 18 22 22 C 1.50700 * 120.00416 * 179.97438 * 20 19 18 23 23 N 1.46502 * 109.47039 * 179.97438 * 22 20 19 24 24 C 1.34428 * 126.81945 * 124.71071 * 23 22 20 25 25 N 1.30835 * 108.07756 * 179.89294 * 24 23 22 26 26 C 1.33234 * 109.82629 * 0.37950 * 25 24 23 27 27 N 1.30718 * 108.95019 * 359.76225 * 26 25 24 28 28 H 0.97000 * 120.00289 * 0.02562 * 1 2 3 29 29 H 1.08992 * 109.47409 * 59.99754 * 10 9 7 30 30 H 1.09006 * 109.46818 * 299.99501 * 10 9 7 31 31 H 1.08999 * 113.46454 * 267.68853 * 14 13 11 32 32 H 1.08996 * 113.46624 * 38.13503 * 14 13 11 33 33 H 1.08998 * 114.39661 * 272.67713 * 15 14 13 34 34 H 1.08995 * 114.26877 * 139.78716 * 15 14 13 35 35 H 1.09001 * 109.46980 * 295.82864 * 18 16 13 36 36 H 1.09001 * 109.46907 * 55.82640 * 18 16 13 37 37 H 0.97008 * 119.99866 * 4.95689 * 19 18 16 38 38 H 1.09001 * 109.46895 * 299.99836 * 22 20 19 39 39 H 1.09000 * 109.47068 * 60.00070 * 22 20 19 40 40 H 1.08008 * 125.96509 * 0.03832 * 24 23 22 41 41 H 1.08007 * 125.52637 * 179.72778 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0466 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4403 0.7001 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1294 -2.7279 -0.0005 10 6 2.5159 -3.8913 -0.0005 11 6 1.9876 -5.3027 -0.0012 12 8 0.7912 -5.5023 -0.0011 13 7 2.8443 -6.3431 0.0043 14 6 4.3019 -6.5150 -0.0897 15 6 4.1422 -7.8198 0.7079 16 6 2.7326 -7.8063 0.1002 17 1 2.6719 -8.3015 -0.8690 18 6 1.6460 -8.2721 1.0713 19 7 1.5429 -9.7327 1.0248 20 6 0.5796 -10.3630 1.7257 21 8 -0.2016 -9.7210 2.3953 22 6 0.4732 -11.8654 1.6773 23 7 -0.6446 -12.3031 2.5172 24 6 -1.6852 -13.0661 2.1401 25 7 -2.4629 -13.2340 3.1787 26 6 -1.9585 -12.5894 4.2299 27 7 -0.8451 -12.0039 3.8746 28 1 -0.4850 0.8400 -0.0004 29 1 3.1245 -3.7313 0.8893 30 1 3.1245 -3.7312 -0.8906 31 1 4.6558 -6.6699 -1.1089 32 1 4.8646 -5.7467 0.4405 33 1 4.1635 -7.6915 1.7900 34 1 4.7715 -8.6383 0.3585 35 1 1.9038 -7.9582 2.0828 36 1 0.6907 -7.8312 0.7863 37 1 2.1679 -10.2462 0.4894 38 1 0.3023 -12.1847 0.6492 39 1 1.3989 -12.3073 2.0460 40 1 -1.8492 -13.4718 1.1526 41 1 -2.3985 -12.5556 5.2157 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001722051383.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:01 Heat of formation + Delta-G solvation = 39.399642 kcal Electronic energy + Delta-G solvation = -25537.402497 eV Core-core repulsion = 21581.413735 eV Total energy + Delta-G solvation = -3955.988761 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.00405 -41.65898 -40.57302 -38.93373 -35.90629 -35.01683 -34.62764 -32.25623 -32.15569 -30.42322 -29.48184 -28.24086 -27.67896 -24.38382 -23.29329 -23.07655 -22.89454 -21.75878 -20.31146 -19.55273 -18.66856 -18.39404 -17.96222 -17.27636 -17.02206 -16.91885 -16.67290 -16.46470 -16.07359 -15.84565 -15.67783 -15.40241 -15.01797 -14.89127 -14.58810 -14.54207 -13.96484 -13.86934 -13.65220 -13.41753 -13.19793 -13.00122 -12.91299 -12.75783 -12.64747 -12.41795 -11.77567 -11.69962 -11.42469 -11.17902 -11.02569 -10.90372 -10.78561 -10.55750 -10.33474 -10.25877 -9.80909 -8.73551 -8.38347 -6.18248 0.66352 1.14945 1.31721 1.40207 1.40436 1.46420 1.51791 1.52857 1.80903 2.02506 2.22715 2.24991 2.95659 3.17264 3.32474 3.51257 3.54131 3.64347 3.72031 3.74156 3.97742 4.01761 4.09259 4.16172 4.21241 4.40292 4.40872 4.47397 4.59017 4.66786 4.72588 4.98106 4.99455 5.21147 5.24526 5.35032 5.37207 5.45331 5.87926 6.15668 6.44007 6.58538 7.02200 7.07254 7.11341 7.18222 8.71062 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018281 B = 0.001962 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.284336 B =14266.060251 C =15427.900366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.011 3.989 3 Si 1.003 2.997 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.257 1.257 7 C -0.545 4.545 8 H 0.084 0.916 9 S -0.158 6.158 10 C -0.116 4.116 11 C 0.555 3.445 12 O -0.568 6.568 13 N -0.653 5.653 14 C 0.093 3.907 15 C -0.123 4.123 16 C 0.122 3.878 17 H 0.130 0.870 18 C 0.122 3.878 19 N -0.697 5.697 20 C 0.489 3.511 21 O -0.578 6.578 22 C 0.117 3.883 23 N -0.379 5.379 24 C 0.264 3.736 25 N -0.579 5.579 26 C 0.183 3.817 27 N -0.339 5.339 28 H 0.271 0.729 29 H 0.103 0.897 30 H 0.108 0.892 31 H 0.117 0.883 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.144 0.856 35 H 0.049 0.951 36 H 0.033 0.967 37 H 0.428 0.572 38 H 0.190 0.810 39 H 0.155 0.845 40 H 0.271 0.729 41 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.402 -31.063 -2.353 34.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.194 4.194 3 Si 0.824 3.176 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.181 1.181 7 C -0.693 4.693 8 H 0.102 0.898 9 S 0.070 5.930 10 C -0.268 4.268 11 C 0.345 3.655 12 O -0.446 6.446 13 N -0.390 5.390 14 C -0.028 4.028 15 C -0.160 4.160 16 C 0.019 3.981 17 H 0.147 0.853 18 C -0.003 4.003 19 N -0.353 5.353 20 C 0.274 3.726 21 O -0.456 6.456 22 C -0.008 4.008 23 N -0.170 5.170 24 C -0.032 4.032 25 N -0.307 5.307 26 C -0.120 4.120 27 N -0.166 5.166 28 H 0.080 0.920 29 H 0.121 0.879 30 H 0.126 0.874 31 H 0.135 0.865 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.162 0.838 35 H 0.068 0.932 36 H 0.052 0.948 37 H 0.268 0.732 38 H 0.207 0.793 39 H 0.173 0.827 40 H 0.286 0.714 41 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 12.021 -30.349 -1.433 32.674 hybrid contribution 1.166 1.686 -0.164 2.057 sum 13.188 -28.662 -1.597 31.591 Atomic orbital electron populations 1.70199 1.08092 1.28693 1.47899 1.26205 0.96013 1.03528 0.93642 0.84900 0.78144 0.75670 0.78924 1.19037 1.20338 1.18055 1.23179 0.95311 0.91729 1.59062 0.89792 1.85674 1.10754 0.99568 1.97050 1.23246 1.03276 0.93946 1.06286 1.19706 0.85168 0.85705 0.74956 1.90713 1.17298 1.85645 1.50988 1.49845 1.10512 1.05726 1.72913 1.23436 0.78440 0.98128 1.02774 1.23601 0.93168 0.98593 1.00670 1.23211 0.95370 0.79888 0.99627 0.85302 1.21238 0.99064 0.80915 0.99131 1.45408 1.33704 1.06356 1.49858 1.21426 0.80465 0.91636 0.79037 1.90861 1.43550 1.68853 1.42300 1.22038 0.90668 0.89616 0.98463 1.50191 1.20777 1.38565 1.07515 1.27078 0.83058 0.91519 1.01513 1.70517 1.31827 1.28220 1.00112 1.26450 0.91333 0.93531 1.00703 1.78102 1.21720 1.23689 0.93093 0.91955 0.87889 0.87413 0.86469 0.89637 0.89157 0.83798 0.93237 0.94815 0.73233 0.79321 0.82738 0.71390 0.75254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.36 13.22 21.65 0.29 -57.08 16 2 C 0.01 0.62 5.49 84.86 0.47 1.09 16 3 Si 1.00 44.15 29.55 68.60 2.03 46.17 16 4 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 5 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 6 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 7 C -0.55 -31.78 9.50 67.95 0.65 -31.13 16 8 H 0.08 4.51 7.80 -2.91 -0.02 4.49 16 9 S -0.16 -9.11 20.57 -56.49 -1.16 -10.27 16 10 C -0.12 -4.84 5.99 71.24 0.43 -4.41 16 11 C 0.56 21.70 7.97 87.66 0.70 22.40 16 12 O -0.57 -28.19 15.46 -3.06 -0.05 -28.24 16 13 N -0.65 -16.25 3.56 -833.11 -2.97 -19.22 16 14 C 0.09 1.13 8.43 83.27 0.70 1.83 16 15 C -0.12 -0.85 8.03 31.02 0.25 -0.60 16 16 C 0.12 1.87 4.06 41.80 0.17 2.04 16 17 H 0.13 1.19 8.14 -2.38 -0.02 1.17 16 18 C 0.12 2.79 5.47 86.38 0.47 3.26 16 19 N -0.70 -8.64 5.55 -463.09 -2.57 -11.21 16 20 C 0.49 9.05 7.87 87.66 0.69 9.74 16 21 O -0.58 -19.95 15.74 -3.03 -0.05 -20.00 16 22 C 0.12 0.75 7.03 85.63 0.60 1.35 16 23 N -0.38 -6.26 3.41 -355.79 -1.21 -7.48 16 24 C 0.26 3.58 12.63 180.36 2.28 5.86 16 25 N -0.58 -12.26 11.19 -203.99 -2.28 -14.54 16 26 C 0.18 4.15 13.03 180.77 2.36 6.50 16 27 N -0.34 -8.63 11.82 -61.24 -0.72 -9.36 16 28 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 29 H 0.10 3.94 8.14 -2.40 -0.02 3.92 16 30 H 0.11 4.00 8.14 -2.39 -0.02 3.98 16 31 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.09 0.86 7.95 -2.39 -0.02 0.84 16 34 H 0.14 -0.35 8.14 -2.39 -0.02 -0.37 16 35 H 0.05 1.36 7.89 -2.39 -0.02 1.34 16 36 H 0.03 1.19 7.15 -2.39 -0.02 1.17 16 37 H 0.43 0.22 8.48 -92.70 -0.79 -0.57 16 38 H 0.19 -1.01 8.09 -2.39 -0.02 -1.03 16 39 H 0.16 -0.03 8.14 -2.39 -0.02 -0.05 16 40 H 0.27 0.24 8.06 -2.91 -0.02 0.21 16 41 H 0.23 3.84 8.06 -2.91 -0.02 3.82 16 Total: -1.00 -110.35 375.67 1.34 -109.01 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: 0.28 Total: 4.28 kcal Atomic # 6 Polarization: 8.17 SS G_CDS: 9.75 Total: 17.93 kcal Atomic # 7 Polarization: -109.41 SS G_CDS: -9.47 Total: -118.88 kcal Atomic # 8 Polarization: -48.15 SS G_CDS: -0.09 Total: -48.24 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Atomic # 16 Polarization: -9.11 SS G_CDS: -1.16 Total: -10.27 kcal Total: -110.35 1.34 -109.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722051383.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.410 kcal (2) G-P(sol) polarization free energy of solvation -110.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -109.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds