Wall clock time and date at job start Tue Mar 31 2020 22:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86798 * 119.99820 * 2 1 4 4 H 1.48503 * 109.46916 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47079 * 299.99218 * 3 2 1 6 6 H 1.48493 * 109.47644 * 59.99644 * 3 2 1 7 7 C 1.38794 * 120.00059 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00163 * 179.97438 * 7 2 1 9 9 S 1.76203 * 120.00044 * 0.02562 * 7 2 1 10 10 C 1.81001 * 100.00049 * 179.97438 * 9 7 2 11 11 C 1.50695 * 109.46985 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00239 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99939 * 179.97438 * 11 10 9 14 14 C 1.47064 * 136.05821 * 354.63866 * 13 11 10 15 15 C 1.53244 * 88.08676 * 207.20560 * 14 13 11 16 16 C 1.47071 * 136.06048 * 175.01350 * 13 11 10 17 17 H 1.09004 * 113.46879 * 267.62592 * 16 13 11 18 18 C 1.53001 * 113.46631 * 38.00040 * 16 13 11 19 19 N 1.46505 * 109.47292 * 184.10591 * 18 16 13 20 20 C 1.34774 * 120.00132 * 184.97999 * 19 18 16 21 21 O 1.21285 * 120.00167 * 0.02562 * 20 19 18 22 22 C 1.50699 * 120.00081 * 180.02562 * 20 19 18 23 23 N 1.46498 * 109.46956 * 180.02562 * 22 20 19 24 24 C 1.34426 * 126.82158 * 125.00230 * 23 22 20 25 25 N 1.30836 * 108.07697 * 179.97438 * 24 23 22 26 26 C 1.33238 * 109.82821 * 359.97438 * 25 24 23 27 27 N 1.30712 * 108.94581 * 359.75816 * 26 25 24 28 28 H 0.97002 * 120.00329 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.46592 * 299.99559 * 10 9 7 30 30 H 1.08996 * 109.47503 * 59.99737 * 10 9 7 31 31 H 1.09003 * 113.46911 * 321.94221 * 14 13 11 32 32 H 1.09009 * 113.46964 * 92.37872 * 14 13 11 33 33 H 1.08998 * 114.32508 * 220.47409 * 15 14 13 34 34 H 1.09000 * 114.01216 * 87.71162 * 15 14 13 35 35 H 1.09000 * 109.47277 * 304.11096 * 18 16 13 36 36 H 1.08999 * 109.47338 * 64.10686 * 18 16 13 37 37 H 0.97005 * 119.99674 * 4.98572 * 19 18 16 38 38 H 1.09011 * 109.46589 * 300.00112 * 22 20 19 39 39 H 1.08993 * 109.46886 * 60.00040 * 22 20 19 40 40 H 1.08003 * 125.96539 * 359.97438 * 24 23 22 41 41 H 1.07999 * 125.52897 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9874 -5.3026 -0.0001 12 8 0.7911 -5.5022 0.0000 13 7 2.8441 -6.3430 -0.0007 14 6 4.3016 -6.5145 -0.0964 15 6 4.0474 -7.9003 -0.6992 16 6 2.7325 -7.8069 0.0873 17 1 2.8080 -8.1875 1.1059 18 6 1.5280 -8.3726 -0.6677 19 7 1.4450 -9.8178 -0.4423 20 6 0.5176 -10.5490 -1.0916 21 8 -0.2481 -10.0107 -1.8629 22 6 0.4319 -12.0355 -0.8592 23 7 -0.6476 -12.5959 -1.6758 24 6 -0.5485 -13.6023 -2.5615 25 7 -1.7323 -13.8038 -3.0810 26 6 -2.6086 -12.9498 -2.5539 27 7 -1.9929 -12.1930 -1.6839 28 1 -0.4851 0.8400 -0.0004 29 1 3.1243 -3.7313 -0.8895 30 1 3.1245 -3.7313 0.8904 31 1 4.7757 -5.8209 -0.7909 32 1 4.7994 -6.5475 0.8729 33 1 4.7262 -8.6757 -0.3444 34 1 3.9217 -7.8967 -1.7819 35 1 0.6165 -7.8956 -0.3072 36 1 1.6429 -8.1772 -1.7339 37 1 2.0576 -10.2484 0.1745 38 1 1.3772 -12.5017 -1.1375 39 1 0.2283 -12.2274 0.1942 40 1 0.3512 -14.1491 -2.8023 41 1 -3.6582 -12.8943 -2.8022 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001722051384.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:04 Heat of formation + Delta-G solvation = 73.976550 kcal Electronic energy + Delta-G solvation = -25519.166624 eV Core-core repulsion = 21564.677229 eV Total energy + Delta-G solvation = -3954.489394 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.35537 -40.73293 -39.69487 -37.60906 -35.04641 -34.38485 -32.45376 -31.47710 -30.93358 -29.61323 -28.27728 -27.54689 -25.50110 -23.64827 -22.50512 -22.27802 -22.18011 -21.01031 -19.08102 -18.00702 -17.80895 -17.63172 -16.73573 -16.47390 -16.04752 -15.74921 -15.41974 -15.23066 -14.86070 -14.82405 -14.41500 -14.36297 -14.02431 -13.95127 -13.80612 -13.19905 -12.91563 -12.74798 -12.55267 -12.22141 -12.12896 -11.98586 -11.73564 -11.08955 -11.06978 -10.96299 -10.78222 -10.64187 -10.31004 -10.05722 -9.86798 -9.83953 -9.56754 -9.27990 -9.09819 -8.74467 -8.26295 -6.53335 -6.23822 -3.95103 1.29843 1.80627 2.17205 2.43264 2.72220 2.87012 3.00666 3.19947 3.22899 3.29080 3.52100 3.94578 3.97607 4.00209 4.17414 4.18097 4.42723 4.46462 4.56109 4.58785 4.68944 4.85889 4.92241 5.06482 5.11396 5.23631 5.36802 5.46939 5.54237 5.73124 5.77528 5.87961 5.88804 5.89499 6.08875 6.12298 6.15888 6.39049 7.01064 7.57390 7.73128 7.77217 7.81372 8.32958 8.45680 9.21303 10.83642 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.020252 B = 0.001919 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.218473 B =14586.909742 C =15728.818176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.073 3.927 3 Si 0.920 3.080 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.059 6.059 10 C -0.144 4.144 11 C 0.561 3.439 12 O -0.507 6.507 13 N -0.647 5.647 14 C 0.101 3.899 15 C -0.152 4.152 16 C 0.124 3.876 17 H 0.096 0.904 18 C 0.114 3.886 19 N -0.724 5.724 20 C 0.496 3.504 21 O -0.501 6.501 22 C 0.113 3.887 23 N -0.372 5.372 24 C 0.253 3.747 25 N -0.544 5.544 26 C 0.194 3.806 27 N -0.287 5.287 28 H 0.268 0.732 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.400 0.600 38 H 0.131 0.869 39 H 0.120 0.880 40 H 0.219 0.781 41 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.473 -28.900 0.284 31.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.295 4.295 11 C 0.351 3.649 12 O -0.380 6.380 13 N -0.388 5.388 14 C -0.022 4.022 15 C -0.190 4.190 16 C 0.019 3.981 17 H 0.113 0.887 18 C -0.010 4.010 19 N -0.378 5.378 20 C 0.279 3.721 21 O -0.374 6.374 22 C -0.013 4.013 23 N -0.164 5.164 24 C -0.044 4.044 25 N -0.271 5.271 26 C -0.109 4.109 27 N -0.113 5.113 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.108 0.892 34 H 0.115 0.885 35 H 0.107 0.893 36 H 0.095 0.905 37 H 0.234 0.766 38 H 0.149 0.851 39 H 0.138 0.862 40 H 0.236 0.764 41 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 8.387 -28.089 -0.077 29.315 hybrid contribution 2.627 1.165 0.447 2.908 sum 11.015 -26.925 0.370 29.093 Atomic orbital electron populations 1.70027 1.05958 1.27415 1.46767 1.25004 0.95044 0.99074 0.94513 0.86101 0.79534 0.81822 0.77935 1.19624 1.20526 1.20541 1.22890 0.94911 0.91543 1.59030 0.90862 1.85464 1.04720 0.96376 1.96718 1.23475 1.06592 0.94546 1.04859 1.20031 0.85364 0.84912 0.74605 1.90737 1.14716 1.84760 1.47787 1.49744 1.08164 1.04972 1.75872 1.22837 0.82360 0.96099 1.00921 1.23551 0.96540 0.97670 1.01206 1.22756 0.94266 0.81947 0.99117 0.88677 1.21646 0.99704 0.78597 1.01038 1.45730 1.36268 1.08986 1.46816 1.20403 0.81319 0.88667 0.81699 1.90872 1.39720 1.72106 1.34675 1.21547 0.89365 0.92896 0.97524 1.49985 1.07429 1.26699 1.32283 1.26077 0.99000 0.90234 0.89057 1.70530 0.99796 1.28004 1.28765 1.26062 1.01116 0.90644 0.93115 1.78257 0.87566 1.21946 1.23556 0.92177 0.89317 0.89257 0.89977 0.89700 0.89169 0.88497 0.89254 0.90454 0.76627 0.85090 0.86239 0.76443 0.76622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.32 13.22 55.49 0.73 -25.59 16 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.45 29.55 -169.99 -5.02 16.42 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.54 -15.31 9.50 30.94 0.29 -15.02 16 8 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 9 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 10 C -0.14 -2.95 5.99 36.00 0.22 -2.73 16 11 C 0.56 10.64 8.02 -10.99 -0.09 10.55 16 12 O -0.51 -11.72 15.24 5.56 0.08 -11.63 16 13 N -0.65 -8.50 3.57 -177.62 -0.63 -9.13 16 14 C 0.10 0.82 8.40 -8.65 -0.07 0.75 16 15 C -0.15 -0.89 8.01 -26.35 -0.21 -1.10 16 16 C 0.12 1.11 4.09 -72.40 -0.30 0.81 16 17 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 18 C 0.11 1.29 5.39 -4.04 -0.02 1.27 16 19 N -0.72 -5.19 5.55 -60.29 -0.33 -5.53 16 20 C 0.50 4.77 7.87 -10.99 -0.09 4.68 16 21 O -0.50 -8.06 15.75 5.55 0.09 -7.97 16 22 C 0.11 0.55 7.03 -5.20 -0.04 0.52 16 23 N -0.37 -3.33 3.40 -63.81 -0.22 -3.55 16 24 C 0.25 1.88 12.63 -90.65 -1.14 0.74 16 25 N -0.54 -5.71 11.19 -15.83 -0.18 -5.88 16 26 C 0.19 2.11 13.03 -91.82 -1.20 0.92 16 27 N -0.29 -3.64 11.83 29.29 0.35 -3.29 16 28 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.09 1.69 8.14 -51.91 -0.42 1.26 16 30 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.54 8.14 -51.92 -0.42 0.11 16 33 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.10 0.64 7.95 -51.93 -0.41 0.23 16 35 H 0.09 1.44 7.05 -51.93 -0.37 1.07 16 36 H 0.08 1.01 7.89 -51.93 -0.41 0.60 16 37 H 0.40 1.05 8.48 -40.82 -0.35 0.70 16 38 H 0.13 -0.03 8.09 -51.92 -0.42 -0.45 16 39 H 0.12 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.22 0.43 8.06 -52.48 -0.42 0.01 16 41 H 0.22 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 375.33 15.07 5.66 5.66 Total: -1.00 -43.94 375.33 -9.73 -53.67 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: -5.30 Total: -2.72 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: -2.74 Total: 3.39 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: -0.28 Total: -52.97 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: 0.17 Total: -19.60 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -43.94 -9.73 -53.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722051384.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.645 kcal (2) G-P(sol) polarization free energy of solvation -43.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds