Wall clock time and date at job start Tue Mar 31 2020 22:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86798 * 119.99820 * 2 1 4 4 H 1.48503 * 109.46916 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47079 * 299.99218 * 3 2 1 6 6 H 1.48493 * 109.47644 * 59.99644 * 3 2 1 7 7 C 1.38794 * 120.00059 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00163 * 179.97438 * 7 2 1 9 9 S 1.76203 * 120.00044 * 0.02562 * 7 2 1 10 10 C 1.81001 * 100.00049 * 179.97438 * 9 7 2 11 11 C 1.50695 * 109.46985 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00239 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99939 * 179.97438 * 11 10 9 14 14 C 1.47064 * 136.05821 * 354.63866 * 13 11 10 15 15 C 1.53244 * 88.08676 * 207.20560 * 14 13 11 16 16 C 1.47071 * 136.06048 * 175.01350 * 13 11 10 17 17 H 1.09004 * 113.46879 * 267.62592 * 16 13 11 18 18 C 1.53001 * 113.46631 * 38.00040 * 16 13 11 19 19 N 1.46505 * 109.47292 * 184.10591 * 18 16 13 20 20 C 1.34774 * 120.00132 * 184.97999 * 19 18 16 21 21 O 1.21285 * 120.00167 * 0.02562 * 20 19 18 22 22 C 1.50699 * 120.00081 * 180.02562 * 20 19 18 23 23 N 1.46498 * 109.46956 * 180.02562 * 22 20 19 24 24 C 1.34426 * 126.82158 * 125.00230 * 23 22 20 25 25 N 1.30836 * 108.07697 * 179.97438 * 24 23 22 26 26 C 1.33238 * 109.82821 * 359.97438 * 25 24 23 27 27 N 1.30712 * 108.94581 * 359.75816 * 26 25 24 28 28 H 0.97002 * 120.00329 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.46592 * 299.99559 * 10 9 7 30 30 H 1.08996 * 109.47503 * 59.99737 * 10 9 7 31 31 H 1.09003 * 113.46911 * 321.94221 * 14 13 11 32 32 H 1.09009 * 113.46964 * 92.37872 * 14 13 11 33 33 H 1.08998 * 114.32508 * 220.47409 * 15 14 13 34 34 H 1.09000 * 114.01216 * 87.71162 * 15 14 13 35 35 H 1.09000 * 109.47277 * 304.11096 * 18 16 13 36 36 H 1.08999 * 109.47338 * 64.10686 * 18 16 13 37 37 H 0.97005 * 119.99674 * 4.98572 * 19 18 16 38 38 H 1.09011 * 109.46589 * 300.00112 * 22 20 19 39 39 H 1.08993 * 109.46886 * 60.00040 * 22 20 19 40 40 H 1.08003 * 125.96539 * 359.97438 * 24 23 22 41 41 H 1.07999 * 125.52897 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9874 -5.3026 -0.0001 12 8 0.7911 -5.5022 0.0000 13 7 2.8441 -6.3430 -0.0007 14 6 4.3016 -6.5145 -0.0964 15 6 4.0474 -7.9003 -0.6992 16 6 2.7325 -7.8069 0.0873 17 1 2.8080 -8.1875 1.1059 18 6 1.5280 -8.3726 -0.6677 19 7 1.4450 -9.8178 -0.4423 20 6 0.5176 -10.5490 -1.0916 21 8 -0.2481 -10.0107 -1.8629 22 6 0.4319 -12.0355 -0.8592 23 7 -0.6476 -12.5959 -1.6758 24 6 -0.5485 -13.6023 -2.5615 25 7 -1.7323 -13.8038 -3.0810 26 6 -2.6086 -12.9498 -2.5539 27 7 -1.9929 -12.1930 -1.6839 28 1 -0.4851 0.8400 -0.0004 29 1 3.1243 -3.7313 -0.8895 30 1 3.1245 -3.7313 0.8904 31 1 4.7757 -5.8209 -0.7909 32 1 4.7994 -6.5475 0.8729 33 1 4.7262 -8.6757 -0.3444 34 1 3.9217 -7.8967 -1.7819 35 1 0.6165 -7.8956 -0.3072 36 1 1.6429 -8.1772 -1.7339 37 1 2.0576 -10.2484 0.1745 38 1 1.3772 -12.5017 -1.1375 39 1 0.2283 -12.2274 0.1942 40 1 0.3512 -14.1491 -2.8023 41 1 -3.6582 -12.8943 -2.8022 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001722051384.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:03 Heat of formation + Delta-G solvation = 39.150351 kcal Electronic energy + Delta-G solvation = -25520.676801 eV Core-core repulsion = 21564.677229 eV Total energy + Delta-G solvation = -3955.999571 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.00038 -41.67012 -40.56627 -38.93485 -35.90192 -35.01230 -34.62992 -32.26571 -32.15765 -30.41793 -29.48506 -28.23648 -27.67926 -24.38260 -23.28167 -23.08568 -22.88324 -21.76651 -20.30857 -19.53249 -18.65233 -18.38634 -17.96122 -17.30190 -16.93252 -16.84537 -16.77537 -16.46269 -16.18281 -15.85748 -15.60143 -15.37466 -15.10338 -14.77632 -14.63695 -14.52754 -13.98335 -13.84977 -13.63807 -13.42742 -13.18968 -12.95285 -12.91595 -12.76523 -12.63840 -12.41844 -11.76198 -11.74252 -11.41876 -11.19775 -11.01920 -10.90052 -10.78663 -10.55403 -10.32744 -10.22938 -9.80206 -8.73531 -8.38524 -6.18340 0.68105 1.15065 1.31968 1.39263 1.40394 1.46588 1.52301 1.54375 1.81569 2.02868 2.22805 2.25698 2.95644 3.16999 3.33386 3.52587 3.54592 3.66030 3.70279 3.74143 3.98860 4.02670 4.10178 4.16502 4.20948 4.40469 4.42138 4.47191 4.59887 4.66919 4.73762 4.99198 4.99339 5.21879 5.24778 5.35752 5.37463 5.45309 5.90172 6.15839 6.44506 6.58946 7.02184 7.07736 7.11983 7.18577 8.71158 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.020252 B = 0.001919 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.218473 B =14586.909742 C =15728.818176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.010 3.990 3 Si 1.003 2.997 4 H -0.254 1.254 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.544 4.544 8 H 0.084 0.916 9 S -0.158 6.158 10 C -0.116 4.116 11 C 0.555 3.445 12 O -0.567 6.567 13 N -0.653 5.653 14 C 0.093 3.907 15 C -0.122 4.122 16 C 0.122 3.878 17 H 0.131 0.869 18 C 0.123 3.877 19 N -0.698 5.698 20 C 0.489 3.511 21 O -0.578 6.578 22 C 0.116 3.884 23 N -0.379 5.379 24 C 0.267 3.733 25 N -0.579 5.579 26 C 0.183 3.817 27 N -0.344 5.344 28 H 0.271 0.729 29 H 0.103 0.897 30 H 0.108 0.892 31 H 0.084 0.916 32 H 0.118 0.882 33 H 0.145 0.855 34 H 0.088 0.912 35 H 0.031 0.969 36 H 0.051 0.949 37 H 0.428 0.572 38 H 0.197 0.803 39 H 0.147 0.853 40 H 0.275 0.725 41 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.705 -31.290 1.207 35.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.194 4.194 3 Si 0.824 3.176 4 H -0.178 1.178 5 H -0.200 1.200 6 H -0.198 1.198 7 C -0.692 4.692 8 H 0.102 0.898 9 S 0.069 5.931 10 C -0.267 4.267 11 C 0.344 3.656 12 O -0.446 6.446 13 N -0.390 5.390 14 C -0.028 4.028 15 C -0.159 4.159 16 C 0.019 3.981 17 H 0.148 0.852 18 C -0.002 4.002 19 N -0.354 5.354 20 C 0.275 3.725 21 O -0.456 6.456 22 C -0.008 4.008 23 N -0.171 5.171 24 C -0.029 4.029 25 N -0.306 5.306 26 C -0.120 4.120 27 N -0.171 5.171 28 H 0.080 0.920 29 H 0.121 0.879 30 H 0.126 0.874 31 H 0.103 0.897 32 H 0.135 0.865 33 H 0.163 0.837 34 H 0.107 0.893 35 H 0.049 0.951 36 H 0.069 0.931 37 H 0.267 0.733 38 H 0.214 0.786 39 H 0.165 0.835 40 H 0.290 0.710 41 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 13.747 -30.556 0.897 33.518 hybrid contribution 1.125 1.729 0.165 2.069 sum 14.872 -28.827 1.062 32.455 Atomic orbital electron populations 1.70204 1.08109 1.28632 1.47965 1.26205 0.96010 1.03542 0.93652 0.84847 0.78628 0.75980 0.78115 1.17763 1.19953 1.19800 1.23217 0.95320 0.91719 1.58955 0.89770 1.85692 1.10787 0.99600 1.97046 1.23255 1.03249 0.93940 1.06299 1.19705 0.85195 0.85669 0.74994 1.90717 1.17271 1.85608 1.50977 1.49822 1.10367 1.05743 1.73080 1.23340 0.78996 0.97407 1.03069 1.23502 0.94429 0.97620 1.00363 1.23230 0.94660 0.78867 1.01353 0.85166 1.21247 0.98483 0.80887 0.99607 1.45435 1.36238 1.07077 1.46630 1.21408 0.80026 0.90847 0.80219 1.90856 1.42604 1.73959 1.38132 1.22035 0.90952 0.89034 0.98776 1.50177 1.06791 1.27067 1.33041 1.27125 0.99665 0.89150 0.86935 1.70518 1.01109 1.28878 1.30129 1.26421 1.02085 0.90518 0.92940 1.78146 0.90095 1.23689 1.25196 0.91959 0.87857 0.87409 0.89743 0.86458 0.83689 0.89308 0.95100 0.93068 0.73299 0.78590 0.83548 0.71004 0.75435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.39 13.22 21.65 0.29 -57.10 16 2 C 0.01 0.60 5.49 84.86 0.47 1.07 16 3 Si 1.00 44.13 29.55 68.60 2.03 46.16 16 4 H -0.25 -10.33 7.11 99.48 0.71 -9.63 16 5 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 6 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.54 -31.72 9.50 67.95 0.65 -31.07 16 8 H 0.08 4.53 7.80 -2.91 -0.02 4.51 16 9 S -0.16 -9.15 20.57 -56.49 -1.16 -10.31 16 10 C -0.12 -4.82 5.99 71.23 0.43 -4.40 16 11 C 0.56 21.71 8.02 87.66 0.70 22.41 16 12 O -0.57 -28.27 15.24 -3.04 -0.05 -28.32 16 13 N -0.65 -16.25 3.57 -834.24 -2.98 -19.23 16 14 C 0.09 1.12 8.40 83.09 0.70 1.82 16 15 C -0.12 -0.82 8.01 30.84 0.25 -0.57 16 16 C 0.12 1.86 4.09 41.78 0.17 2.03 16 17 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 18 C 0.12 2.84 5.39 86.38 0.47 3.30 16 19 N -0.70 -8.68 5.55 -463.05 -2.57 -11.25 16 20 C 0.49 8.96 7.87 87.66 0.69 9.65 16 21 O -0.58 -19.72 15.75 -3.04 -0.05 -19.76 16 22 C 0.12 0.73 7.03 85.63 0.60 1.34 16 23 N -0.38 -6.17 3.40 -355.80 -1.21 -7.38 16 24 C 0.27 3.30 12.63 180.36 2.28 5.57 16 25 N -0.58 -11.83 11.19 -204.00 -2.28 -14.11 16 26 C 0.18 4.20 13.03 180.77 2.36 6.56 16 27 N -0.34 -9.05 11.83 -61.25 -0.72 -9.78 16 28 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 29 H 0.10 3.91 8.14 -2.39 -0.02 3.90 16 30 H 0.11 4.01 8.14 -2.40 -0.02 3.99 16 31 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.12 0.79 8.14 -2.38 -0.02 0.77 16 33 H 0.15 -0.40 8.14 -2.39 -0.02 -0.42 16 34 H 0.09 0.84 7.95 -2.39 -0.02 0.82 16 35 H 0.03 1.09 7.05 -2.39 -0.02 1.08 16 36 H 0.05 1.43 7.89 -2.39 -0.02 1.41 16 37 H 0.43 0.31 8.48 -92.70 -0.79 -0.47 16 38 H 0.20 -1.39 8.09 -2.38 -0.02 -1.41 16 39 H 0.15 0.21 8.14 -2.39 -0.02 0.19 16 40 H 0.27 -0.32 8.06 -2.91 -0.02 -0.34 16 41 H 0.23 3.95 8.06 -2.91 -0.02 3.92 16 Total: -1.00 -111.12 375.33 1.32 -109.80 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: 0.28 Total: 3.57 kcal Atomic # 6 Polarization: 7.96 SS G_CDS: 9.75 Total: 17.71 kcal Atomic # 7 Polarization: -109.36 SS G_CDS: -9.48 Total: -118.84 kcal Atomic # 8 Polarization: -47.99 SS G_CDS: -0.09 Total: -48.08 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Atomic # 16 Polarization: -9.15 SS G_CDS: -1.16 Total: -10.31 kcal Total: -111.12 1.32 -109.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722051384.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.950 kcal (2) G-P(sol) polarization free energy of solvation -111.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -109.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds