Wall clock time and date at job start Tue Mar 31 2020 22:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86799 * 119.99734 * 2 1 4 4 H 1.48494 * 109.46887 * 269.99639 * 3 2 1 5 5 H 1.48496 * 109.47135 * 29.99994 * 3 2 1 6 6 H 1.48497 * 109.46874 * 149.99597 * 3 2 1 7 7 C 1.38796 * 119.99962 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00299 * 0.02562 * 7 2 1 9 9 S 1.76201 * 119.99991 * 180.02562 * 7 2 1 10 10 C 1.81001 * 100.00270 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47085 * 179.97438 * 10 9 7 12 12 O 1.21276 * 120.00096 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99951 * 179.97438 * 11 10 9 14 14 C 1.46498 * 119.99834 * 180.27682 * 13 11 10 15 15 C 1.53002 * 109.46733 * 185.67649 * 14 13 11 16 16 N 1.46501 * 115.55223 * 273.09788 * 15 14 13 17 17 C 1.34775 * 119.99941 * 294.92154 * 16 15 14 18 18 O 1.21280 * 120.00457 * 354.97181 * 17 16 15 19 19 C 1.50706 * 119.99768 * 174.97829 * 17 16 15 20 20 N 1.46503 * 109.46979 * 179.97438 * 19 17 16 21 21 N 1.28595 * 124.61408 * 269.69910 * 20 19 17 22 22 C 1.31385 * 108.71551 * 179.83103 * 21 20 19 23 23 C 1.39678 * 105.89944 * 0.40934 * 22 21 20 24 24 N 1.28594 * 124.62056 * 89.99827 * 20 19 17 25 25 C 1.52997 * 117.49607 * 127.43073 * 15 14 13 26 26 C 1.53006 * 117.49872 * 58.77296 * 15 14 13 27 27 H 0.96996 * 120.00170 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.46872 * 60.00071 * 10 9 7 29 29 H 1.08997 * 109.47195 * 300.00160 * 10 9 7 30 30 H 0.97006 * 119.99784 * 0.02562 * 13 11 10 31 31 H 1.08992 * 109.47040 * 305.67696 * 14 13 11 32 32 H 1.09005 * 109.47179 * 65.68394 * 14 13 11 33 33 H 0.97002 * 119.99720 * 114.91682 * 16 15 14 34 34 H 1.09009 * 109.46694 * 299.99294 * 19 17 16 35 35 H 1.08996 * 109.47155 * 59.99387 * 19 17 16 36 36 H 1.08002 * 127.04873 * 180.15764 * 22 21 20 37 37 H 1.07998 * 127.05079 * 179.76272 * 23 22 21 38 38 H 1.09001 * 117.50020 * 359.97438 * 25 15 14 39 39 H 1.09004 * 117.50183 * 145.01814 * 25 15 14 40 40 H 1.09001 * 117.49685 * 214.97588 * 26 15 14 41 41 H 1.08996 * 117.49655 * 359.96848 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7723 -1.2020 0.0012 10 6 4.0867 -2.9845 0.0009 11 6 5.5731 -3.2324 0.0008 12 8 6.3441 -2.2962 0.0014 13 7 6.0458 -4.4946 0.0011 14 6 7.4908 -4.7356 0.0072 15 6 7.7583 -6.2352 -0.1364 16 7 7.7712 -6.9974 1.1146 17 6 8.7232 -6.7599 2.0386 18 8 9.6215 -5.9815 1.7976 19 6 8.6716 -7.4618 3.3712 20 7 9.8090 -7.0372 4.1911 21 7 10.9547 -7.6211 4.2093 22 6 11.7402 -6.9823 5.0466 23 6 10.9745 -5.9366 5.5675 24 7 9.7962 -6.0333 4.9947 25 6 8.7161 -6.6790 -1.2440 26 6 7.2132 -6.9338 -1.3838 27 1 -0.4850 0.8400 -0.0004 28 1 3.6441 -3.4314 -0.8894 29 1 3.6434 -3.4318 0.8906 30 1 5.4292 -5.2434 0.0011 31 1 7.9514 -4.2030 -0.8248 32 1 7.9147 -4.3792 0.9461 33 1 7.0946 -7.6730 1.2779 34 1 7.7416 -7.2075 3.8799 35 1 8.7180 -8.5396 3.2162 36 1 12.7662 -7.2197 5.2862 37 1 11.2871 -5.1996 6.2924 38 1 9.1553 -5.9027 -1.8705 39 1 9.3555 -7.5383 -1.0420 40 1 6.8645 -7.9606 -1.2736 41 1 6.6636 -6.3251 -2.1017 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001722056578.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:17 Heat of formation + Delta-G solvation = 76.625570 kcal Electronic energy + Delta-G solvation = -25887.055583 eV Core-core repulsion = 21932.681060 eV Total energy + Delta-G solvation = -3954.374524 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.83226 -40.65482 -39.23506 -37.85608 -34.27551 -34.04905 -33.30337 -32.69070 -32.44877 -29.93935 -28.80680 -26.56312 -25.58205 -23.43602 -23.17731 -22.88591 -21.30837 -20.44810 -20.26650 -18.33380 -18.06964 -17.78509 -16.92537 -16.44589 -16.28839 -16.07337 -15.71295 -15.23759 -15.08710 -14.94698 -14.88314 -14.56155 -14.23651 -13.84718 -13.32846 -13.28936 -13.01678 -12.83787 -12.75168 -12.02143 -11.93312 -11.92344 -11.42007 -11.27295 -11.07776 -11.01346 -10.97191 -10.63983 -10.59243 -10.56864 -9.88303 -9.73378 -9.61582 -9.43630 -9.04269 -8.98700 -8.50804 -6.92939 -6.30055 -4.01826 1.37009 1.77433 1.96720 2.23624 2.53533 2.68027 2.95597 3.06072 3.32673 3.42960 3.51005 3.68331 3.79178 3.90724 4.13101 4.31713 4.32622 4.36854 4.42623 4.48362 4.73227 4.75792 5.00954 5.07965 5.09111 5.16416 5.24094 5.42326 5.45099 5.63159 5.68400 5.73065 5.75657 5.89225 5.97741 5.98828 6.27747 6.44516 6.81590 7.55771 7.58932 7.92974 8.02477 8.39925 8.46368 9.16271 10.79082 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.014716 B = 0.002267 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.270492 B =12347.342349 C =13491.055377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.095 3.905 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.141 6.141 10 C -0.123 4.123 11 C 0.529 3.471 12 O -0.517 6.517 13 N -0.735 5.735 14 C 0.155 3.845 15 C 0.084 3.916 16 N -0.695 5.695 17 C 0.504 3.496 18 O -0.503 6.503 19 C 0.124 3.876 20 N -0.147 5.147 21 N -0.284 5.284 22 C -0.023 4.023 23 C -0.022 4.022 24 N -0.278 5.278 25 C -0.156 4.156 26 C -0.162 4.162 27 H 0.271 0.729 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.398 0.602 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.406 0.594 34 H 0.140 0.860 35 H 0.137 0.863 36 H 0.199 0.801 37 H 0.199 0.801 38 H 0.107 0.893 39 H 0.101 0.899 40 H 0.105 0.895 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.943 -23.034 5.199 30.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.273 4.273 11 C 0.315 3.685 12 O -0.391 6.391 13 N -0.390 5.390 14 C 0.030 3.970 15 C -0.004 4.004 16 N -0.348 5.348 17 C 0.287 3.713 18 O -0.376 6.376 19 C -0.001 4.001 20 N -0.047 5.047 21 N -0.125 5.125 22 C -0.206 4.206 23 C -0.205 4.205 24 N -0.118 5.118 25 C -0.195 4.195 26 C -0.200 4.200 27 H 0.081 0.919 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.232 0.768 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.241 0.759 34 H 0.158 0.842 35 H 0.155 0.845 36 H 0.215 0.785 37 H 0.216 0.784 38 H 0.125 0.875 39 H 0.119 0.881 40 H 0.123 0.877 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 19.635 -21.174 4.277 29.192 hybrid contribution -0.676 -0.765 0.647 1.208 sum 18.959 -21.939 4.924 29.411 Atomic orbital electron populations 1.69935 1.05902 1.27782 1.48065 1.24713 0.94462 0.98985 0.93168 0.86734 0.81926 0.83261 0.79950 1.19200 1.19928 1.15900 1.22308 0.88260 0.97515 1.58803 0.89394 1.84845 1.09258 0.99981 1.97416 1.23266 0.93863 1.04469 1.05741 1.20305 0.90629 0.82205 0.75339 1.90720 1.58771 1.42167 1.47419 1.45964 1.07015 1.08071 1.77926 1.20899 0.81797 0.90513 1.03757 1.20811 1.07840 0.91352 0.80356 1.45171 1.31389 1.41026 1.17212 1.20511 0.82323 0.83052 0.85384 1.90835 1.33556 1.34555 1.78610 1.21638 0.87335 1.01886 0.89199 1.47255 1.09441 1.18505 1.29510 1.74021 0.93760 1.24172 1.20519 1.24801 1.01708 0.96152 0.97950 1.24840 0.89755 1.02018 1.03909 1.74112 1.24756 1.07244 1.05690 1.23382 0.92737 1.03746 0.99617 1.23398 0.97478 1.01818 0.97269 0.91935 0.88497 0.88516 0.76795 0.89993 0.90628 0.75862 0.84209 0.84479 0.78452 0.78398 0.87471 0.88065 0.87702 0.86868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.48 13.97 55.49 0.78 -25.70 16 2 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 3 Si 0.86 21.87 27.74 -169.99 -4.72 17.16 16 4 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16 6 H -0.24 -6.02 6.74 56.52 0.38 -5.64 16 7 C -0.52 -14.95 10.04 30.94 0.31 -14.64 16 8 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 9 S -0.14 -3.59 18.55 -107.50 -1.99 -5.58 16 10 C -0.12 -2.33 6.16 36.01 0.22 -2.11 16 11 C 0.53 9.35 7.85 -10.98 -0.09 9.27 16 12 O -0.52 -11.42 15.85 5.56 0.09 -11.33 16 13 N -0.73 -9.01 5.43 -60.30 -0.33 -9.33 16 14 C 0.16 1.87 5.66 -4.04 -0.02 1.85 16 15 C 0.08 0.67 1.74 -131.82 -0.23 0.44 16 16 N -0.69 -4.31 5.45 -47.60 -0.26 -4.57 16 17 C 0.50 4.61 7.58 -10.98 -0.08 4.52 16 18 O -0.50 -7.23 15.63 5.56 0.09 -7.14 16 19 C 0.12 0.81 7.02 -5.19 -0.04 0.77 16 20 N -0.15 -1.56 3.44 -11.65 -0.04 -1.60 16 21 N -0.28 -3.07 12.05 30.68 0.37 -2.70 16 22 C -0.02 -0.20 12.20 -17.21 -0.21 -0.41 16 23 C -0.02 -0.20 12.20 -17.21 -0.21 -0.41 16 24 N -0.28 -3.28 12.05 30.67 0.37 -2.91 16 25 C -0.16 -1.15 10.11 -26.69 -0.27 -1.42 16 26 C -0.16 -0.90 9.91 -26.69 -0.26 -1.17 16 27 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 28 H 0.10 1.68 8.14 -51.91 -0.42 1.25 16 29 H 0.10 1.70 8.14 -51.92 -0.42 1.28 16 30 H 0.40 3.55 8.35 -40.82 -0.34 3.21 16 31 H 0.08 1.08 7.87 -51.93 -0.41 0.67 16 32 H 0.08 1.15 7.15 -51.93 -0.37 0.78 16 33 H 0.41 0.96 8.83 -40.82 -0.36 0.60 16 34 H 0.14 0.57 8.14 -51.92 -0.42 0.15 16 35 H 0.14 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.20 0.92 8.06 -52.49 -0.42 0.50 16 37 H 0.20 1.11 8.06 -52.49 -0.42 0.68 16 38 H 0.11 0.83 8.04 -51.93 -0.42 0.41 16 39 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.11 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 376.76 15.07 5.68 5.68 Total: -1.00 -41.29 376.76 -6.23 -47.52 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -5.28 Total: 1.11 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: -0.98 Total: -0.61 kcal Atomic # 7 Polarization: -47.69 SS G_CDS: 0.89 Total: -46.81 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: 0.18 Total: -18.47 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.72 Total: 17.16 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -1.99 Total: -5.58 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -41.29 -6.23 -47.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722056578.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.141 kcal (2) G-P(sol) polarization free energy of solvation -41.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds