Wall clock time and date at job start Tue Mar 31 2020 22:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86799 * 119.99734 * 2 1 4 4 H 1.48494 * 109.46887 * 269.99639 * 3 2 1 5 5 H 1.48496 * 109.47135 * 29.99994 * 3 2 1 6 6 H 1.48497 * 109.46874 * 149.99597 * 3 2 1 7 7 C 1.38796 * 119.99962 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00299 * 0.02562 * 7 2 1 9 9 S 1.76201 * 119.99991 * 180.02562 * 7 2 1 10 10 C 1.81001 * 100.00270 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47085 * 179.97438 * 10 9 7 12 12 O 1.21276 * 120.00096 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99951 * 179.97438 * 11 10 9 14 14 C 1.46498 * 119.99834 * 180.27682 * 13 11 10 15 15 C 1.53002 * 109.46733 * 185.67649 * 14 13 11 16 16 N 1.46501 * 115.55223 * 273.09788 * 15 14 13 17 17 C 1.34775 * 119.99941 * 294.92154 * 16 15 14 18 18 O 1.21280 * 120.00457 * 354.97181 * 17 16 15 19 19 C 1.50706 * 119.99768 * 174.97829 * 17 16 15 20 20 N 1.46503 * 109.46979 * 179.97438 * 19 17 16 21 21 N 1.28595 * 124.61408 * 269.69910 * 20 19 17 22 22 C 1.31385 * 108.71551 * 179.83103 * 21 20 19 23 23 C 1.39678 * 105.89944 * 0.40934 * 22 21 20 24 24 N 1.28594 * 124.62056 * 89.99827 * 20 19 17 25 25 C 1.52997 * 117.49607 * 127.43073 * 15 14 13 26 26 C 1.53006 * 117.49872 * 58.77296 * 15 14 13 27 27 H 0.96996 * 120.00170 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.46872 * 60.00071 * 10 9 7 29 29 H 1.08997 * 109.47195 * 300.00160 * 10 9 7 30 30 H 0.97006 * 119.99784 * 0.02562 * 13 11 10 31 31 H 1.08992 * 109.47040 * 305.67696 * 14 13 11 32 32 H 1.09005 * 109.47179 * 65.68394 * 14 13 11 33 33 H 0.97002 * 119.99720 * 114.91682 * 16 15 14 34 34 H 1.09009 * 109.46694 * 299.99294 * 19 17 16 35 35 H 1.08996 * 109.47155 * 59.99387 * 19 17 16 36 36 H 1.08002 * 127.04873 * 180.15764 * 22 21 20 37 37 H 1.07998 * 127.05079 * 179.76272 * 23 22 21 38 38 H 1.09001 * 117.50020 * 359.97438 * 25 15 14 39 39 H 1.09004 * 117.50183 * 145.01814 * 25 15 14 40 40 H 1.09001 * 117.49685 * 214.97588 * 26 15 14 41 41 H 1.08996 * 117.49655 * 359.96848 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7723 -1.2020 0.0012 10 6 4.0867 -2.9845 0.0009 11 6 5.5731 -3.2324 0.0008 12 8 6.3441 -2.2962 0.0014 13 7 6.0458 -4.4946 0.0011 14 6 7.4908 -4.7356 0.0072 15 6 7.7583 -6.2352 -0.1364 16 7 7.7712 -6.9974 1.1146 17 6 8.7232 -6.7599 2.0386 18 8 9.6215 -5.9815 1.7976 19 6 8.6716 -7.4618 3.3712 20 7 9.8090 -7.0372 4.1911 21 7 10.9547 -7.6211 4.2093 22 6 11.7402 -6.9823 5.0466 23 6 10.9745 -5.9366 5.5675 24 7 9.7962 -6.0333 4.9947 25 6 8.7161 -6.6790 -1.2440 26 6 7.2132 -6.9338 -1.3838 27 1 -0.4850 0.8400 -0.0004 28 1 3.6441 -3.4314 -0.8894 29 1 3.6434 -3.4318 0.8906 30 1 5.4292 -5.2434 0.0011 31 1 7.9514 -4.2030 -0.8248 32 1 7.9147 -4.3792 0.9461 33 1 7.0946 -7.6730 1.2779 34 1 7.7416 -7.2075 3.8799 35 1 8.7180 -8.5396 3.2162 36 1 12.7662 -7.2197 5.2862 37 1 11.2871 -5.1996 6.2924 38 1 9.1553 -5.9027 -1.8705 39 1 9.3555 -7.5383 -1.0420 40 1 6.8645 -7.9606 -1.2736 41 1 6.6636 -6.3251 -2.1017 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001722056578.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:16 Heat of formation + Delta-G solvation = 42.108526 kcal Electronic energy + Delta-G solvation = -25888.552355 eV Core-core repulsion = 21932.681060 eV Total energy + Delta-G solvation = -3955.871295 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.49802 -41.43052 -40.50434 -38.66897 -35.33899 -34.86394 -34.67255 -33.93813 -33.40263 -31.38511 -29.40174 -27.98093 -27.47964 -24.08960 -23.83557 -23.49220 -21.97275 -21.79617 -21.02056 -19.90939 -18.95957 -18.57576 -18.02066 -17.63551 -17.22020 -17.07893 -16.78734 -16.59230 -16.47004 -15.81190 -15.67217 -15.58942 -15.23812 -14.96487 -14.91736 -14.62949 -14.41035 -13.68414 -13.51017 -13.38149 -13.33782 -13.02053 -12.68070 -12.59543 -12.49513 -12.05114 -11.88174 -11.81248 -11.69480 -11.34153 -11.32781 -11.17820 -11.04332 -10.53420 -10.31403 -10.26395 -10.18943 -9.00818 -8.52154 -6.22761 0.69970 0.96991 1.22303 1.30101 1.31600 1.45534 1.51539 1.53342 1.59369 1.95554 2.06757 2.24251 2.66217 2.79274 2.86168 3.28476 3.30212 3.51090 3.68286 3.79576 3.92243 3.95875 4.01021 4.15568 4.21696 4.35593 4.45306 4.51496 4.57444 4.68113 4.70635 4.94118 5.03983 5.13726 5.26975 5.32065 5.33666 5.65052 5.70623 6.11285 6.31258 6.41909 6.93515 7.02557 7.14865 7.34120 8.59949 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.014716 B = 0.002267 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.270492 B =12347.342349 C =13491.055377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.046 3.954 3 Si 0.912 3.088 4 H -0.262 1.262 5 H -0.259 1.259 6 H -0.240 1.240 7 C -0.525 4.525 8 H 0.066 0.934 9 S -0.183 6.183 10 C -0.107 4.107 11 C 0.533 3.467 12 O -0.567 6.567 13 N -0.703 5.703 14 C 0.161 3.839 15 C 0.069 3.931 16 N -0.673 5.673 17 C 0.502 3.498 18 O -0.564 6.564 19 C 0.118 3.882 20 N -0.157 5.157 21 N -0.308 5.308 22 C -0.025 4.025 23 C -0.029 4.029 24 N -0.317 5.317 25 C -0.165 4.165 26 C -0.128 4.128 27 H 0.277 0.723 28 H 0.120 0.880 29 H 0.116 0.884 30 H 0.419 0.581 31 H 0.067 0.933 32 H 0.042 0.958 33 H 0.428 0.572 34 H 0.164 0.836 35 H 0.175 0.825 36 H 0.231 0.769 37 H 0.226 0.774 38 H 0.096 0.904 39 H 0.106 0.894 40 H 0.138 0.862 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.281 -25.376 5.214 32.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.159 4.159 3 Si 0.734 3.266 4 H -0.187 1.187 5 H -0.184 1.184 6 H -0.164 1.164 7 C -0.673 4.673 8 H 0.084 0.916 9 S 0.043 5.957 10 C -0.258 4.258 11 C 0.318 3.682 12 O -0.445 6.445 13 N -0.357 5.357 14 C 0.036 3.964 15 C -0.019 4.019 16 N -0.327 5.327 17 C 0.287 3.713 18 O -0.441 6.441 19 C -0.005 4.005 20 N -0.057 5.057 21 N -0.148 5.148 22 C -0.207 4.207 23 C -0.212 4.212 24 N -0.157 5.157 25 C -0.203 4.203 26 C -0.165 4.165 27 H 0.086 0.914 28 H 0.138 0.862 29 H 0.134 0.866 30 H 0.257 0.743 31 H 0.085 0.915 32 H 0.060 0.940 33 H 0.268 0.732 34 H 0.181 0.819 35 H 0.193 0.807 36 H 0.248 0.752 37 H 0.242 0.758 38 H 0.115 0.885 39 H 0.125 0.875 40 H 0.156 0.844 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 19.909 -23.616 4.287 31.184 hybrid contribution -0.722 -0.187 0.636 0.980 sum 19.187 -23.803 4.923 30.967 Atomic orbital electron populations 1.70004 1.07152 1.28972 1.49174 1.25520 0.95262 1.02110 0.93023 0.85903 0.80625 0.79902 0.80174 1.18713 1.18359 1.16404 1.22432 0.89984 0.96757 1.58087 0.91562 1.84855 1.06737 1.06498 1.97600 1.23240 0.95239 0.99470 1.07807 1.20095 0.89652 0.83251 0.75160 1.90712 1.59564 1.44077 1.50189 1.45643 1.07793 1.06903 1.75400 1.20777 0.80640 0.93586 1.01404 1.20554 1.10103 0.89397 0.81840 1.44978 1.31092 1.40625 1.16053 1.21044 0.81719 0.82169 0.86417 1.90810 1.36098 1.37323 1.79856 1.22051 0.87386 1.03634 0.87444 1.47595 1.10089 1.18264 1.29732 1.73975 0.94388 1.25078 1.21374 1.25431 1.02879 0.95489 0.96942 1.25420 0.89223 1.02556 1.03968 1.74056 1.26309 1.08407 1.06972 1.23414 0.94208 1.03665 0.99047 1.23531 0.95686 1.03031 0.94269 0.91375 0.86202 0.86591 0.74289 0.91454 0.93990 0.73204 0.81901 0.80724 0.75225 0.75787 0.88530 0.87549 0.84417 0.86760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.31 13.97 21.65 0.30 -55.01 16 2 C 0.05 2.71 5.50 84.86 0.47 3.18 16 3 Si 0.91 45.27 27.74 68.60 1.90 47.17 16 4 H -0.26 -12.72 7.11 99.48 0.71 -12.01 16 5 H -0.26 -12.08 7.11 99.48 0.71 -11.37 16 6 H -0.24 -12.03 6.74 99.48 0.67 -11.36 16 7 C -0.52 -30.23 10.04 67.95 0.68 -29.55 16 8 H 0.07 3.98 8.03 -2.91 -0.02 3.95 16 9 S -0.18 -9.28 18.55 -56.49 -1.05 -10.33 16 10 C -0.11 -3.89 6.16 71.24 0.44 -3.45 16 11 C 0.53 18.30 7.85 87.66 0.69 18.99 16 12 O -0.57 -25.32 15.85 -3.02 -0.05 -25.37 16 13 N -0.70 -15.99 5.43 -463.07 -2.51 -18.50 16 14 C 0.16 3.81 5.66 86.38 0.49 4.30 16 15 C 0.07 0.98 1.74 3.61 0.01 0.98 16 16 N -0.67 -6.76 5.45 -422.91 -2.31 -9.07 16 17 C 0.50 8.66 7.58 87.66 0.66 9.33 16 18 O -0.56 -16.56 15.63 -3.03 -0.05 -16.61 16 19 C 0.12 1.33 7.02 85.63 0.60 1.93 16 20 N -0.16 -3.20 3.44 -190.79 -0.66 -3.86 16 21 N -0.31 -6.39 12.05 -56.86 -0.69 -7.07 16 22 C -0.02 -0.40 12.20 85.11 1.04 0.64 16 23 C -0.03 -0.51 12.20 85.11 1.04 0.53 16 24 N -0.32 -7.42 12.05 -56.87 -0.69 -8.10 16 25 C -0.16 -2.15 10.11 30.62 0.31 -1.84 16 26 C -0.13 -0.96 9.91 30.62 0.30 -0.66 16 27 H 0.28 15.50 8.31 -92.71 -0.77 14.73 16 28 H 0.12 3.85 8.14 -2.39 -0.02 3.83 16 29 H 0.12 3.82 8.14 -2.40 -0.02 3.80 16 30 H 0.42 6.06 8.35 -92.70 -0.77 5.29 16 31 H 0.07 1.81 7.87 -2.39 -0.02 1.79 16 32 H 0.04 1.32 7.15 -2.38 -0.02 1.30 16 33 H 0.43 0.39 8.83 -92.71 -0.82 -0.43 16 34 H 0.16 0.98 8.14 -2.38 -0.02 0.96 16 35 H 0.18 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.23 1.72 8.06 -2.91 -0.02 1.70 16 37 H 0.23 2.27 8.06 -2.91 -0.02 2.25 16 38 H 0.10 1.46 8.04 -2.39 -0.02 1.44 16 39 H 0.11 1.30 8.14 -2.39 -0.02 1.29 16 40 H 0.14 0.21 8.14 -2.39 -0.02 0.19 16 41 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -94.02 376.76 0.40 -93.62 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -0.54 Total: 8.74 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: 6.73 Total: 4.39 kcal Atomic # 7 Polarization: -95.07 SS G_CDS: -6.54 Total: -101.61 kcal Atomic # 8 Polarization: -41.88 SS G_CDS: -0.10 Total: -41.98 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.90 Total: 47.17 kcal Atomic # 16 Polarization: -9.28 SS G_CDS: -1.05 Total: -10.33 kcal Total: -94.02 0.40 -93.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722056578.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.729 kcal (2) G-P(sol) polarization free energy of solvation -94.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds