Wall clock time and date at job start Tue Mar 31 2020 22:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86798 * 119.99638 * 2 1 4 4 H 1.48502 * 109.46752 * 239.99626 * 3 2 1 5 5 H 1.48493 * 109.47321 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47456 * 119.99995 * 3 2 1 7 7 C 1.38797 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99660 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00330 * 0.02562 * 7 2 1 10 10 C 1.80994 * 100.00030 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47187 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00069 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00106 * 179.97438 * 11 10 9 14 14 C 1.46507 * 119.99984 * 175.46218 * 13 11 10 15 15 C 1.52999 * 115.54616 * 294.47958 * 14 13 11 16 16 N 1.46497 * 109.47461 * 324.38868 * 15 14 13 17 17 C 1.34774 * 120.00202 * 174.51904 * 16 15 14 18 18 O 1.21287 * 119.99803 * 0.02562 * 17 16 15 19 19 C 1.50692 * 120.00150 * 179.97438 * 17 16 15 20 20 C 1.50701 * 109.47446 * 180.02562 * 19 17 16 21 21 N 1.33248 * 125.52764 * 89.99958 * 20 19 17 22 22 C 1.30828 * 109.82976 * 180.02562 * 21 20 19 23 23 N 1.34426 * 108.07830 * 359.97438 * 22 21 20 24 24 H 0.97001 * 126.82418 * 180.02562 * 23 22 21 25 25 N 1.30715 * 125.52964 * 269.69811 * 20 19 17 26 26 C 1.52993 * 117.49990 * 148.80951 * 14 13 11 27 27 C 1.52999 * 117.49914 * 80.14739 * 14 13 11 28 28 H 0.96995 * 120.00197 * 0.02562 * 1 2 3 29 29 H 1.09008 * 109.47401 * 60.00125 * 10 9 7 30 30 H 1.08999 * 109.47705 * 299.99752 * 10 9 7 31 31 H 0.97001 * 120.00110 * 355.18850 * 13 11 10 32 32 H 1.09005 * 109.46957 * 84.39267 * 15 14 13 33 33 H 1.08997 * 109.47016 * 204.38643 * 15 14 13 34 34 H 0.97002 * 120.00165 * 354.52474 * 16 15 14 35 35 H 1.09003 * 109.47601 * 300.00164 * 19 17 16 36 36 H 1.09002 * 109.47102 * 60.00570 * 19 17 16 37 37 H 1.08001 * 125.96080 * 179.97438 * 22 21 20 38 38 H 1.09005 * 117.49674 * 359.97438 * 26 14 13 39 39 H 1.09001 * 117.50250 * 145.01693 * 26 14 13 40 40 H 1.08994 * 117.50200 * 214.97932 * 27 14 13 41 41 H 1.09002 * 117.49893 * 359.97438 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6966 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8913 0.0005 11 6 1.9875 -5.3027 0.0012 12 8 0.7913 -5.5023 0.0011 13 7 2.8443 -6.3431 0.0008 14 6 2.3338 -7.7126 0.1018 15 6 1.6465 -8.0647 1.4225 16 7 2.3248 -7.3779 2.5245 17 6 1.8247 -7.4510 3.7738 18 8 0.8133 -8.0859 3.9860 19 6 2.5229 -6.7450 4.9074 20 6 1.7671 -6.9835 6.1892 21 7 1.9742 -7.9932 7.0338 22 6 1.1479 -7.9032 8.0441 23 7 0.3827 -6.8131 7.8614 24 1 -0.3195 -6.4909 8.4478 25 7 0.8060 -6.2303 6.6558 26 6 3.1299 -8.8166 -0.5967 27 6 1.7878 -8.3588 -1.1731 28 1 -0.4850 0.8400 -0.0004 29 1 3.1246 -3.7313 0.8906 30 1 3.1246 -3.7313 -0.8894 31 1 3.7988 -6.1853 -0.0704 32 1 0.6037 -7.7494 1.3848 33 1 1.6947 -9.1420 1.5812 34 1 3.1339 -6.8704 2.3549 35 1 3.5371 -7.1318 5.0068 36 1 2.5604 -5.6754 4.7011 37 1 1.0905 -8.5856 8.8792 38 1 4.0334 -8.5240 -1.1318 39 1 3.1638 -9.7941 -0.1155 40 1 0.9392 -9.0352 -1.0708 41 1 1.8080 -7.7648 -2.0868 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001722103705.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:55 Heat of formation + Delta-G solvation = 44.790893 kcal Electronic energy + Delta-G solvation = -26194.549298 eV Core-core repulsion = 22238.794319 eV Total energy + Delta-G solvation = -3955.754979 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.25919 -40.16135 -39.14497 -37.29129 -34.22307 -33.46635 -32.82377 -32.43650 -31.84969 -29.64136 -28.98440 -26.66722 -25.49439 -23.01859 -22.80062 -21.59095 -21.35520 -20.11288 -19.57203 -18.52669 -17.88493 -17.42418 -16.77617 -16.32961 -15.83958 -15.47956 -15.35667 -15.03331 -14.87293 -14.81505 -14.49938 -14.04122 -13.58649 -13.51987 -13.36829 -13.22369 -12.77974 -12.39951 -12.28708 -12.11025 -12.06506 -11.69360 -11.06567 -11.05673 -11.02497 -10.79312 -10.44989 -10.35436 -10.21975 -10.04141 -9.83830 -9.70442 -9.44008 -9.08266 -9.04952 -8.95703 -8.25168 -6.51318 -6.22371 -3.93393 1.45826 2.45855 2.58571 2.65916 2.85850 3.02113 3.21095 3.22507 3.27122 3.29589 3.54688 3.61303 3.89646 4.19211 4.40773 4.44440 4.62287 4.66562 4.74545 4.88240 5.10384 5.12737 5.21066 5.31758 5.38106 5.39401 5.50379 5.65161 5.75836 5.82955 5.87602 5.93057 6.02552 6.08158 6.19803 6.31711 6.62160 6.84670 7.42679 7.57668 7.61918 7.89812 8.19042 8.33585 8.57468 9.22666 10.84899 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.008209 B = 0.003255 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3410.170220 B = 8600.532730 C =11355.482866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.056 6.056 10 C -0.153 4.153 11 C 0.534 3.466 12 O -0.500 6.500 13 N -0.712 5.712 14 C 0.091 3.909 15 C 0.156 3.844 16 N -0.719 5.719 17 C 0.525 3.475 18 O -0.532 6.532 19 C -0.050 4.050 20 C 0.248 3.752 21 N -0.536 5.536 22 C 0.259 3.741 23 N -0.483 5.483 24 H 0.442 0.558 25 N -0.295 5.295 26 C -0.170 4.170 27 C -0.161 4.161 28 H 0.269 0.731 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.400 0.600 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.401 0.599 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.222 0.778 38 H 0.101 0.899 39 H 0.105 0.895 40 H 0.103 0.897 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.570 -18.820 9.924 23.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.744 3.256 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.170 5.830 10 C -0.304 4.304 11 C 0.320 3.680 12 O -0.372 6.372 13 N -0.368 5.368 14 C 0.002 3.998 15 C 0.031 3.969 16 N -0.372 5.372 17 C 0.309 3.691 18 O -0.407 6.407 19 C -0.093 4.093 20 C -0.036 4.036 21 N -0.265 5.265 22 C -0.040 4.040 23 N -0.201 5.201 24 H 0.287 0.713 25 N -0.124 5.124 26 C -0.207 4.207 27 C -0.200 4.200 28 H 0.079 0.921 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.235 0.765 32 H 0.103 0.897 33 H 0.092 0.908 34 H 0.236 0.764 35 H 0.140 0.860 36 H 0.140 0.860 37 H 0.238 0.762 38 H 0.119 0.881 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 6.662 -19.106 9.661 22.422 hybrid contribution 2.290 1.719 0.431 2.896 sum 8.952 -17.387 10.091 22.006 Atomic orbital electron populations 1.70006 1.05956 1.27601 1.46645 1.24988 0.95011 0.99015 0.94516 0.86233 0.79247 0.81293 0.78784 1.19956 1.20819 1.19917 1.22819 0.94840 0.91692 1.59198 0.90992 1.85479 1.04585 0.96212 1.96707 1.23536 1.06733 0.95267 1.04867 1.20367 0.86634 0.85958 0.75073 1.90725 1.15241 1.85263 1.45979 1.45467 1.09929 1.03526 1.77861 1.20690 1.03272 0.82269 0.93526 1.21029 0.97450 0.96305 0.82135 1.45662 1.30151 1.54253 1.07106 1.20110 0.84768 0.80863 0.83326 1.90732 1.24467 1.41820 1.83731 1.19884 0.99164 1.03792 0.86428 1.23254 0.93989 0.89901 0.96416 1.70327 1.27265 1.24911 1.03959 1.26028 0.88724 0.90564 0.98684 1.48101 1.31330 1.21479 1.19193 0.71252 1.78101 1.15969 1.21949 0.96375 1.23445 0.96345 0.97851 1.03109 1.23318 0.96928 1.02668 0.97070 0.92103 0.89225 0.89301 0.76452 0.89654 0.90772 0.76439 0.86002 0.86006 0.76168 0.88106 0.87630 0.87846 0.87920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.11 13.22 55.49 0.73 -25.38 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.24 29.55 -169.99 -5.02 16.21 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.54 -15.07 9.50 30.94 0.29 -14.78 16 8 H 0.07 1.89 7.80 -52.48 -0.41 1.49 16 9 S -0.06 -1.50 20.57 -107.50 -2.21 -3.71 16 10 C -0.15 -2.91 6.16 36.01 0.22 -2.69 16 11 C 0.53 9.22 7.70 -10.98 -0.08 9.14 16 12 O -0.50 -10.91 15.38 5.56 0.09 -10.82 16 13 N -0.71 -8.29 4.44 -47.61 -0.21 -8.50 16 14 C 0.09 0.98 1.97 -131.82 -0.26 0.72 16 15 C 0.16 1.95 5.43 -4.04 -0.02 1.93 16 16 N -0.72 -8.54 5.40 -60.30 -0.33 -8.86 16 17 C 0.52 7.44 7.82 -10.99 -0.09 7.36 16 18 O -0.53 -9.83 16.03 5.55 0.09 -9.74 16 19 C -0.05 -0.58 6.33 -29.04 -0.18 -0.76 16 20 C 0.25 3.44 6.63 -156.85 -1.04 2.40 16 21 N -0.54 -6.78 11.19 -11.98 -0.13 -6.91 16 22 C 0.26 2.26 13.13 -90.66 -1.19 1.07 16 23 N -0.48 -4.66 7.45 29.53 0.22 -4.44 16 24 H 0.44 2.52 8.96 -182.34 -1.63 0.89 16 25 N -0.29 -4.27 12.80 32.42 0.41 -3.86 16 26 C -0.17 -1.28 10.11 -26.70 -0.27 -1.55 16 27 C -0.16 -1.65 10.18 -26.69 -0.27 -1.92 16 28 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 29 H 0.09 1.53 8.14 -51.91 -0.42 1.11 16 30 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 31 H 0.40 3.33 8.83 -40.82 -0.36 2.97 16 32 H 0.09 1.40 7.90 -51.93 -0.41 0.99 16 33 H 0.07 0.83 7.91 -51.93 -0.41 0.41 16 34 H 0.40 3.76 7.78 -40.82 -0.32 3.44 16 35 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.12 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.22 0.67 8.06 -52.49 -0.42 0.24 16 38 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.11 0.66 8.06 -51.93 -0.42 0.25 16 40 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 378.41 15.07 5.70 5.70 Total: -1.00 -41.77 378.41 -10.13 -51.89 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -6.48 Total: 5.50 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: -2.99 Total: 2.91 kcal Atomic # 7 Polarization: -58.64 SS G_CDS: 0.70 Total: -57.95 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: 0.17 Total: -20.56 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.21 Total: -3.71 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -41.77 -10.13 -51.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722103705.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.684 kcal (2) G-P(sol) polarization free energy of solvation -41.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds