Wall clock time and date at job start Tue Mar 31 2020 22:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86798 * 119.99638 * 2 1 4 4 H 1.48502 * 109.46752 * 239.99626 * 3 2 1 5 5 H 1.48493 * 109.47321 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47456 * 119.99995 * 3 2 1 7 7 C 1.38797 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99660 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00330 * 0.02562 * 7 2 1 10 10 C 1.80994 * 100.00030 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47187 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00069 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00106 * 179.97438 * 11 10 9 14 14 C 1.46507 * 119.99984 * 175.46218 * 13 11 10 15 15 C 1.52999 * 115.54616 * 294.47958 * 14 13 11 16 16 N 1.46497 * 109.47461 * 324.38868 * 15 14 13 17 17 C 1.34774 * 120.00202 * 174.51904 * 16 15 14 18 18 O 1.21287 * 119.99803 * 0.02562 * 17 16 15 19 19 C 1.50692 * 120.00150 * 179.97438 * 17 16 15 20 20 C 1.50701 * 109.47446 * 180.02562 * 19 17 16 21 21 N 1.33248 * 125.52764 * 89.99958 * 20 19 17 22 22 C 1.30828 * 109.82976 * 180.02562 * 21 20 19 23 23 N 1.34426 * 108.07830 * 359.97438 * 22 21 20 24 24 H 0.97001 * 126.82418 * 180.02562 * 23 22 21 25 25 N 1.30715 * 125.52964 * 269.69811 * 20 19 17 26 26 C 1.52993 * 117.49990 * 148.80951 * 14 13 11 27 27 C 1.52999 * 117.49914 * 80.14739 * 14 13 11 28 28 H 0.96995 * 120.00197 * 0.02562 * 1 2 3 29 29 H 1.09008 * 109.47401 * 60.00125 * 10 9 7 30 30 H 1.08999 * 109.47705 * 299.99752 * 10 9 7 31 31 H 0.97001 * 120.00110 * 355.18850 * 13 11 10 32 32 H 1.09005 * 109.46957 * 84.39267 * 15 14 13 33 33 H 1.08997 * 109.47016 * 204.38643 * 15 14 13 34 34 H 0.97002 * 120.00165 * 354.52474 * 16 15 14 35 35 H 1.09003 * 109.47601 * 300.00164 * 19 17 16 36 36 H 1.09002 * 109.47102 * 60.00570 * 19 17 16 37 37 H 1.08001 * 125.96080 * 179.97438 * 22 21 20 38 38 H 1.09005 * 117.49674 * 359.97438 * 26 14 13 39 39 H 1.09001 * 117.50250 * 145.01693 * 26 14 13 40 40 H 1.08994 * 117.50200 * 214.97932 * 27 14 13 41 41 H 1.09002 * 117.49893 * 359.97438 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6966 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8913 0.0005 11 6 1.9875 -5.3027 0.0012 12 8 0.7913 -5.5023 0.0011 13 7 2.8443 -6.3431 0.0008 14 6 2.3338 -7.7126 0.1018 15 6 1.6465 -8.0647 1.4225 16 7 2.3248 -7.3779 2.5245 17 6 1.8247 -7.4510 3.7738 18 8 0.8133 -8.0859 3.9860 19 6 2.5229 -6.7450 4.9074 20 6 1.7671 -6.9835 6.1892 21 7 1.9742 -7.9932 7.0338 22 6 1.1479 -7.9032 8.0441 23 7 0.3827 -6.8131 7.8614 24 1 -0.3195 -6.4909 8.4478 25 7 0.8060 -6.2303 6.6558 26 6 3.1299 -8.8166 -0.5967 27 6 1.7878 -8.3588 -1.1731 28 1 -0.4850 0.8400 -0.0004 29 1 3.1246 -3.7313 0.8906 30 1 3.1246 -3.7313 -0.8894 31 1 3.7988 -6.1853 -0.0704 32 1 0.6037 -7.7494 1.3848 33 1 1.6947 -9.1420 1.5812 34 1 3.1339 -6.8704 2.3549 35 1 3.5371 -7.1318 5.0068 36 1 2.5604 -5.6754 4.7011 37 1 1.0905 -8.5856 8.8792 38 1 4.0334 -8.5240 -1.1318 39 1 3.1638 -9.7941 -0.1155 40 1 0.9392 -9.0352 -1.0708 41 1 1.8080 -7.7648 -2.0868 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001722103705.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:54 Heat of formation + Delta-G solvation = 11.219881 kcal Electronic energy + Delta-G solvation = -26196.005047 eV Core-core repulsion = 22238.794319 eV Total energy + Delta-G solvation = -3957.210727 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.08913 -41.27644 -40.34336 -38.42658 -35.29659 -34.57576 -34.33518 -34.04018 -32.71326 -30.63142 -30.38600 -27.71771 -27.56868 -23.79729 -23.60162 -22.67663 -22.36316 -21.16900 -20.64995 -19.82921 -19.30847 -18.44604 -17.78994 -17.74880 -16.86919 -16.83091 -16.51817 -16.46421 -16.16561 -15.86871 -15.82858 -15.32810 -14.84741 -14.57195 -14.55072 -14.36384 -14.26174 -13.65572 -13.41062 -13.15786 -13.15200 -13.02904 -12.85911 -12.61959 -12.38670 -11.95255 -11.75234 -11.41088 -11.28996 -11.11789 -11.11020 -11.00735 -10.81424 -10.68122 -10.24106 -10.17637 -10.02277 -8.64918 -8.33400 -6.11145 0.64634 1.26666 1.44131 1.46573 1.53903 1.56048 1.64215 1.68771 1.84642 2.12009 2.28640 2.35945 2.76201 3.00883 3.13844 3.31894 3.54603 3.65533 3.78668 3.87846 3.92646 4.07014 4.16141 4.34330 4.41723 4.48779 4.52880 4.55765 4.61655 4.76512 4.78941 5.02172 5.22417 5.22769 5.29228 5.32831 5.42560 5.57389 6.20500 6.25661 6.45088 6.54245 7.07294 7.07949 7.16302 7.31607 8.75433 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.008209 B = 0.003255 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3410.170220 B = 8600.532730 C =11355.482866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.012 3.988 3 Si 0.997 3.003 4 H -0.261 1.261 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.544 4.544 8 H 0.085 0.915 9 S -0.156 6.156 10 C -0.128 4.128 11 C 0.537 3.463 12 O -0.553 6.553 13 N -0.682 5.682 14 C 0.068 3.932 15 C 0.160 3.840 16 N -0.706 5.706 17 C 0.520 3.480 18 O -0.583 6.583 19 C -0.047 4.047 20 C 0.232 3.768 21 N -0.569 5.569 22 C 0.275 3.725 23 N -0.477 5.477 24 H 0.457 0.543 25 N -0.349 5.349 26 C -0.120 4.120 27 C -0.180 4.180 28 H 0.270 0.730 29 H 0.114 0.886 30 H 0.111 0.889 31 H 0.422 0.578 32 H 0.036 0.964 33 H 0.090 0.910 34 H 0.415 0.585 35 H 0.157 0.843 36 H 0.128 0.872 37 H 0.277 0.723 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.102 0.898 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.301 -19.844 10.434 26.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.193 4.193 3 Si 0.819 3.181 4 H -0.185 1.185 5 H -0.207 1.207 6 H -0.185 1.185 7 C -0.691 4.691 8 H 0.103 0.897 9 S 0.071 5.929 10 C -0.280 4.280 11 C 0.323 3.677 12 O -0.430 6.430 13 N -0.338 5.338 14 C -0.020 4.020 15 C 0.034 3.966 16 N -0.359 5.359 17 C 0.306 3.694 18 O -0.462 6.462 19 C -0.089 4.089 20 C -0.051 4.051 21 N -0.298 5.298 22 C -0.023 4.023 23 N -0.197 5.197 24 H 0.305 0.695 25 N -0.179 5.179 26 C -0.157 4.157 27 C -0.218 4.218 28 H 0.079 0.921 29 H 0.132 0.868 30 H 0.129 0.871 31 H 0.261 0.739 32 H 0.054 0.946 33 H 0.108 0.892 34 H 0.252 0.748 35 H 0.175 0.825 36 H 0.146 0.854 37 H 0.292 0.708 38 H 0.144 0.856 39 H 0.146 0.854 40 H 0.121 0.879 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 10.474 -20.143 10.167 24.876 hybrid contribution 1.129 1.864 0.314 2.202 sum 11.603 -18.279 10.481 24.054 Atomic orbital electron populations 1.70191 1.08070 1.28577 1.48163 1.26135 0.95905 1.03388 0.93837 0.85020 0.77791 0.75720 0.79579 1.18530 1.20717 1.18525 1.23177 0.95377 0.91937 1.58654 0.89667 1.85715 1.10746 0.99385 1.97048 1.23373 1.03439 0.94135 1.07023 1.20101 0.86290 0.86420 0.74844 1.90727 1.17596 1.85848 1.48795 1.45058 1.10310 1.02868 1.75526 1.20758 1.05971 0.82282 0.92985 1.20915 0.95217 0.97118 0.83307 1.45579 1.30185 1.53724 1.06381 1.20636 0.84166 0.80215 0.84364 1.90700 1.26722 1.44239 1.84576 1.19998 1.00284 1.03908 0.84733 1.23637 0.94059 0.90224 0.97192 1.70323 1.29116 1.25239 1.05113 1.27084 0.86566 0.90006 0.98638 1.48031 1.31777 1.21619 1.18231 0.69484 1.77976 1.17208 1.24047 0.98717 1.23592 0.95382 0.96883 0.99828 1.23369 0.99303 1.03099 0.96059 0.92128 0.86760 0.87122 0.73875 0.94550 0.89153 0.74802 0.82524 0.85360 0.70811 0.85625 0.85373 0.87916 0.89032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.59 13.22 21.65 0.29 -56.30 16 2 C 0.01 0.68 5.49 84.86 0.47 1.14 16 3 Si 1.00 43.36 29.55 68.60 2.03 45.39 16 4 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 5 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 6 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 7 C -0.54 -30.61 9.50 67.95 0.65 -29.97 16 8 H 0.09 4.38 7.80 -2.91 -0.02 4.36 16 9 S -0.16 -8.57 20.57 -56.49 -1.16 -9.74 16 10 C -0.13 -4.76 6.16 71.24 0.44 -4.32 16 11 C 0.54 18.37 7.70 87.66 0.68 19.04 16 12 O -0.55 -25.09 15.38 -3.02 -0.05 -25.14 16 13 N -0.68 -14.41 4.44 -422.92 -1.88 -16.29 16 14 C 0.07 1.35 1.97 3.60 0.01 1.36 16 15 C 0.16 3.98 5.43 86.38 0.47 4.45 16 16 N -0.71 -16.30 5.40 -463.07 -2.50 -18.79 16 17 C 0.52 14.92 7.82 87.65 0.69 15.60 16 18 O -0.58 -22.45 16.03 -3.05 -0.05 -22.50 16 19 C -0.05 -1.07 6.33 29.10 0.18 -0.89 16 20 C 0.23 6.46 6.63 138.63 0.92 7.38 16 21 N -0.57 -13.86 11.19 -191.80 -2.15 -16.01 16 22 C 0.27 4.32 13.13 180.36 2.37 6.69 16 23 N -0.48 -8.93 7.45 -60.49 -0.45 -9.38 16 24 H 0.46 4.92 8.96 -213.10 -1.91 3.01 16 25 N -0.35 -10.34 12.80 -51.33 -0.66 -11.00 16 26 C -0.12 -1.32 10.11 30.62 0.31 -1.01 16 27 C -0.18 -3.43 10.18 30.62 0.31 -3.12 16 28 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 29 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 30 H 0.11 3.63 8.14 -2.40 -0.02 3.61 16 31 H 0.42 5.37 8.83 -92.71 -0.82 4.55 16 32 H 0.04 1.28 7.90 -2.38 -0.02 1.26 16 33 H 0.09 1.94 7.91 -2.39 -0.02 1.92 16 34 H 0.41 6.96 7.78 -92.71 -0.72 6.23 16 35 H 0.16 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.13 2.65 8.14 -2.39 -0.02 2.64 16 37 H 0.28 0.67 8.06 -2.91 -0.02 0.64 16 38 H 0.13 0.87 8.14 -2.38 -0.02 0.85 16 39 H 0.13 0.96 8.06 -2.39 -0.02 0.94 16 40 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -98.65 378.41 -1.44 -100.08 By element: Atomic # 1 Polarization: 25.66 SS G_CDS: -2.34 Total: 23.32 kcal Atomic # 6 Polarization: 8.88 SS G_CDS: 7.48 Total: 16.36 kcal Atomic # 7 Polarization: -120.43 SS G_CDS: -7.34 Total: -127.78 kcal Atomic # 8 Polarization: -47.54 SS G_CDS: -0.10 Total: -47.64 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 16 Polarization: -8.57 SS G_CDS: -1.16 Total: -9.74 kcal Total: -98.65 -1.44 -100.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722103705.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.300 kcal (2) G-P(sol) polarization free energy of solvation -98.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds