Wall clock time and date at job start Tue Mar 31 2020 22:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46501 * 110.91535 * 2 1 4 4 C 1.34778 * 120.00108 * 297.55135 * 3 2 1 5 5 O 1.21284 * 119.99711 * 0.02562 * 4 3 2 6 6 C 1.50693 * 120.00162 * 179.97438 * 4 3 2 7 7 S 1.80994 * 109.47459 * 180.02562 * 6 4 3 8 8 C 1.76200 * 100.00458 * 180.02562 * 7 6 4 9 9 H 1.08009 * 119.99494 * 0.02562 * 8 7 6 10 10 C 1.38794 * 120.00396 * 180.02562 * 8 7 6 11 11 N 1.31628 * 119.99931 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 120.00124 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47372 * 359.97438 * 12 10 8 14 14 H 1.48504 * 109.47392 * 119.99570 * 12 10 8 15 15 H 1.48495 * 109.47323 * 239.99581 * 12 10 8 16 16 C 1.55158 * 111.00727 * 123.90498 * 2 1 3 17 17 C 1.54316 * 102.94139 * 153.57557 * 16 2 1 18 18 N 1.47020 * 107.27568 * 337.80546 * 17 16 2 19 19 C 1.34776 * 125.65281 * 178.97789 * 18 17 16 20 20 O 1.21617 * 120.00031 * 179.97438 * 19 18 17 21 21 C 1.47232 * 119.99783 * 359.95712 * 19 18 17 22 22 C 1.37010 * 127.18838 * 180.02562 * 21 19 18 23 23 N 1.33328 * 106.37128 * 179.97438 * 22 21 19 24 24 N 1.28513 * 109.43612 * 359.97438 * 23 22 21 25 25 N 1.28714 * 110.64144 * 359.75613 * 24 23 22 26 26 H 0.96997 * 126.03604 * 180.26995 * 25 24 23 27 27 C 1.47422 * 108.70191 * 358.94070 * 18 17 16 28 28 H 1.09004 * 109.47256 * 182.44497 * 1 2 3 29 29 H 1.08998 * 109.47483 * 302.44509 * 1 2 3 30 30 H 1.08999 * 109.47641 * 62.44696 * 1 2 3 31 31 H 0.97001 * 119.99694 * 117.55288 * 3 2 1 32 32 H 1.09008 * 109.47401 * 300.00491 * 6 4 3 33 33 H 1.09008 * 109.47330 * 60.00110 * 6 4 3 34 34 H 0.96999 * 120.00228 * 180.02562 * 11 10 8 35 35 H 1.09003 * 110.71801 * 271.94078 * 16 2 1 36 36 H 1.09003 * 110.71814 * 35.20983 * 16 2 1 37 37 H 1.09000 * 109.88340 * 97.22892 * 17 16 2 38 38 H 1.09003 * 109.88233 * 218.38857 * 17 16 2 39 39 H 1.08003 * 126.81448 * 359.92793 * 22 21 19 40 40 H 1.08998 * 110.36873 * 265.28987 * 27 18 17 41 41 H 1.09005 * 110.36491 * 142.96394 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0529 1.3685 0.0000 4 6 1.7892 2.1907 -1.0348 5 8 1.1185 1.7978 -1.9658 6 6 2.3267 3.5985 -1.0346 7 16 1.8043 4.4441 -2.5472 8 6 2.5501 6.0197 -2.2903 9 1 3.1230 6.2062 -1.3938 10 6 2.4014 7.0211 -3.2397 11 7 1.7037 6.7936 -4.3324 12 14 3.1928 8.6911 -2.9676 13 1 3.9176 8.6902 -1.6715 14 1 4.1482 8.9717 -4.0693 15 1 2.1413 9.7395 -2.9454 16 6 2.0862 -0.8080 1.2022 17 6 3.4674 -1.2741 0.6959 18 7 3.4271 -1.2430 -0.7735 19 6 4.4475 -1.5615 -1.5942 20 8 4.3002 -1.4997 -2.7999 21 6 5.7407 -1.9838 -1.0312 22 6 6.8691 -2.3380 -1.7230 23 7 7.7898 -2.6443 -0.8087 24 7 7.2910 -2.4974 0.3665 25 7 6.0693 -2.0985 0.2942 26 1 5.4839 -1.9139 1.0453 27 6 2.0852 -0.8066 -1.2004 28 1 -0.3634 -1.0268 0.0438 29 1 -0.3634 0.5513 0.8672 30 1 -0.3634 0.4753 -0.9111 31 1 2.5890 1.6828 0.7448 32 1 1.9410 4.1346 -0.1673 33 1 3.4155 3.5718 -0.9904 34 1 1.6001 7.4933 -4.9962 35 1 2.1922 -0.1700 2.0796 36 1 1.4468 -1.6632 1.4209 37 1 4.2425 -0.5998 1.0598 38 1 3.6650 -2.2894 1.0399 39 1 6.9887 -2.3646 -2.7961 40 1 1.4518 -1.6704 -1.4025 41 1 2.1559 -0.1719 -2.0838 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001722183635.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:49 Heat of formation + Delta-G solvation = 41.033356 kcal Electronic energy + Delta-G solvation = -27012.249320 eV Core-core repulsion = 23056.331402 eV Total energy + Delta-G solvation = -3955.917918 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.77000 -40.93451 -39.28763 -37.74368 -34.82868 -33.73334 -32.46445 -32.14974 -31.53711 -30.39777 -28.69497 -27.26598 -25.52546 -25.06299 -23.25991 -23.15062 -21.50770 -21.24291 -19.73397 -18.68672 -17.86743 -17.40195 -17.00688 -16.65171 -16.37366 -16.06006 -15.72600 -15.05860 -14.83662 -14.74651 -14.47604 -14.13520 -13.92441 -13.55375 -13.41208 -12.99292 -12.84207 -12.74034 -12.57998 -12.51588 -12.19041 -11.90259 -11.85182 -11.59613 -11.21434 -11.15546 -11.09613 -11.04591 -10.79046 -10.58281 -9.93119 -9.84899 -9.46635 -9.28071 -9.11118 -9.02033 -8.28468 -6.54053 -6.25233 -3.96107 0.48705 1.91246 1.95323 2.35311 2.68421 2.85988 2.93070 3.19292 3.24165 3.28876 3.56630 3.61298 3.78562 3.91977 4.16303 4.16720 4.28571 4.45704 4.59230 4.60912 4.76251 4.92967 4.98619 5.10291 5.13127 5.20390 5.33595 5.43007 5.55778 5.57814 5.63264 5.71085 5.77406 5.81156 6.04827 6.12060 6.13651 6.47504 6.85392 7.51000 7.54689 7.56439 7.85718 8.31566 8.45651 9.20368 10.82196 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012406 B = 0.002923 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.381812 B = 9576.968930 C =10845.801081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.167 3.833 3 N -0.728 5.728 4 C 0.536 3.464 5 O -0.508 6.508 6 C -0.154 4.154 7 S -0.056 6.056 8 C -0.537 4.537 9 H 0.072 0.928 10 C 0.074 3.926 11 N -0.866 5.866 12 Si 0.919 3.081 13 H -0.272 1.272 14 H -0.279 1.279 15 H -0.280 1.280 16 C -0.128 4.128 17 C 0.079 3.921 18 N -0.612 5.612 19 C 0.608 3.392 20 O -0.500 6.500 21 C -0.060 4.060 22 C 0.036 3.964 23 N -0.268 5.268 24 N -0.050 5.050 25 N -0.380 5.380 26 H 0.448 0.552 27 C 0.098 3.902 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.398 0.602 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.268 0.732 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.207 0.793 40 H 0.083 0.917 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.189 -19.489 16.118 25.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.079 3.921 3 N -0.384 5.384 4 C 0.323 3.677 5 O -0.381 6.381 6 C -0.305 4.305 7 S 0.171 5.829 8 C -0.685 4.685 9 H 0.091 0.909 10 C -0.136 4.136 11 N -0.502 5.502 12 Si 0.745 3.255 13 H -0.196 1.196 14 H -0.205 1.205 15 H -0.205 1.205 16 C -0.166 4.166 17 C -0.044 4.044 18 N -0.347 5.347 19 C 0.394 3.606 20 O -0.371 6.371 21 C -0.194 4.194 22 C -0.124 4.124 23 N -0.133 5.133 24 N -0.032 5.032 25 N -0.111 5.111 26 H 0.299 0.701 27 C -0.024 4.024 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.104 0.896 31 H 0.232 0.768 32 H 0.108 0.892 33 H 0.106 0.894 34 H 0.078 0.922 35 H 0.114 0.886 36 H 0.118 0.882 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.223 0.777 40 H 0.101 0.899 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 2.207 -20.464 14.472 25.161 hybrid contribution 0.402 2.143 1.567 2.685 sum 2.608 -18.321 16.038 24.488 Atomic orbital electron populations 1.22036 0.92073 1.02591 1.04640 1.21282 0.94838 0.82155 0.93814 1.45993 1.56665 1.11773 1.23942 1.20307 0.79414 0.86678 0.81295 1.90685 1.37176 1.75950 1.34287 1.23537 1.04004 0.94955 1.08000 1.85411 1.69304 1.09909 1.18324 1.22893 1.38513 0.97937 1.09141 0.90942 1.24989 0.95110 0.99022 0.94430 1.70019 1.37781 1.33869 1.08487 0.86119 0.78951 0.82081 0.78356 1.19650 1.20507 1.20541 1.22961 0.94526 1.01074 0.98063 1.22314 0.99946 1.00897 0.81266 1.48291 1.13193 1.67134 1.06114 1.16340 0.80615 0.77973 0.85720 1.90942 1.81234 1.52093 1.12875 1.22347 0.99121 1.13645 0.84330 1.23978 0.87455 0.99025 1.01920 1.75018 1.25984 1.17758 0.94536 1.78204 0.92092 1.13846 1.19102 1.46170 1.11906 1.44793 1.08254 0.70088 1.22857 0.80963 0.98839 0.99724 0.91501 0.91652 0.89578 0.76755 0.89233 0.89444 0.92181 0.88564 0.88166 0.91183 0.90860 0.77662 0.89909 0.87411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 8.59 37.15 0.32 -1.05 16 2 C 0.17 1.43 0.82 -129.67 -0.11 1.33 16 3 N -0.73 -7.81 5.17 -45.62 -0.24 -8.05 16 4 C 0.54 8.90 7.24 -10.99 -0.08 8.82 16 5 O -0.51 -10.21 12.67 5.55 0.07 -10.14 16 6 C -0.15 -2.94 6.16 36.00 0.22 -2.72 16 7 S -0.06 -1.48 20.57 -107.50 -2.21 -3.69 16 8 C -0.54 -15.08 9.50 30.94 0.29 -14.79 16 9 H 0.07 1.93 7.80 -52.48 -0.41 1.53 16 10 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 11 N -0.87 -25.93 13.22 55.49 0.73 -25.20 16 12 Si 0.92 21.27 29.55 -169.99 -5.02 16.24 16 13 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 14 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 15 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 16 C -0.13 -0.51 5.99 -24.90 -0.15 -0.66 16 17 C 0.08 0.37 5.12 -3.07 -0.02 0.35 16 18 N -0.61 -5.75 3.33 -171.86 -0.57 -6.32 16 19 C 0.61 7.28 7.84 -12.61 -0.10 7.18 16 20 O -0.50 -8.06 17.18 5.26 0.09 -7.97 16 21 C -0.06 -0.61 6.98 -82.33 -0.57 -1.18 16 22 C 0.04 0.38 11.87 -17.35 -0.21 0.17 16 23 N -0.27 -3.14 12.35 30.48 0.38 -2.76 16 24 N -0.05 -0.52 13.35 60.35 0.81 0.28 16 25 N -0.38 -2.95 6.60 33.31 0.22 -2.73 16 26 H 0.45 1.87 5.14 -190.33 -0.98 0.89 16 27 C 0.10 1.08 5.78 -2.53 -0.01 1.06 16 28 H 0.07 0.43 8.11 -51.93 -0.42 0.01 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.09 1.08 6.54 -51.93 -0.34 0.74 16 31 H 0.40 3.13 8.49 -40.82 -0.35 2.78 16 32 H 0.09 1.56 8.14 -51.91 -0.42 1.13 16 33 H 0.09 1.58 8.14 -51.91 -0.42 1.16 16 34 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.10 0.21 8.05 -51.93 -0.42 -0.21 16 36 H 0.10 0.25 8.01 -51.93 -0.42 -0.17 16 37 H 0.07 0.24 7.12 -51.93 -0.37 -0.13 16 38 H 0.07 0.17 7.30 -51.93 -0.38 -0.21 16 39 H 0.21 1.81 8.06 -52.48 -0.42 1.39 16 40 H 0.08 0.79 8.04 -51.93 -0.42 0.38 16 41 H 0.11 1.70 6.21 -51.93 -0.32 1.38 16 LS Contribution 358.29 15.07 5.40 5.40 Total: -1.00 -37.67 358.29 -6.50 -44.16 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -5.64 Total: 0.25 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -0.51 Total: 0.51 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: 1.33 Total: -44.77 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: 0.16 Total: -18.10 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -1.48 SS G_CDS: -2.21 Total: -3.69 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -37.67 -6.50 -44.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722183635.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.196 kcal (2) G-P(sol) polarization free energy of solvation -37.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds