Wall clock time and date at job start Tue Mar 31 2020 22:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46501 * 110.91535 * 2 1 4 4 C 1.34778 * 120.00108 * 297.55135 * 3 2 1 5 5 O 1.21284 * 119.99711 * 0.02562 * 4 3 2 6 6 C 1.50693 * 120.00162 * 179.97438 * 4 3 2 7 7 S 1.80994 * 109.47459 * 180.02562 * 6 4 3 8 8 C 1.76200 * 100.00458 * 180.02562 * 7 6 4 9 9 H 1.08009 * 119.99494 * 0.02562 * 8 7 6 10 10 C 1.38794 * 120.00396 * 180.02562 * 8 7 6 11 11 N 1.31628 * 119.99931 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 120.00124 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47372 * 359.97438 * 12 10 8 14 14 H 1.48504 * 109.47392 * 119.99570 * 12 10 8 15 15 H 1.48495 * 109.47323 * 239.99581 * 12 10 8 16 16 C 1.55158 * 111.00727 * 123.90498 * 2 1 3 17 17 C 1.54316 * 102.94139 * 153.57557 * 16 2 1 18 18 N 1.47020 * 107.27568 * 337.80546 * 17 16 2 19 19 C 1.34776 * 125.65281 * 178.97789 * 18 17 16 20 20 O 1.21617 * 120.00031 * 179.97438 * 19 18 17 21 21 C 1.47232 * 119.99783 * 359.95712 * 19 18 17 22 22 C 1.37010 * 127.18838 * 180.02562 * 21 19 18 23 23 N 1.33328 * 106.37128 * 179.97438 * 22 21 19 24 24 N 1.28513 * 109.43612 * 359.97438 * 23 22 21 25 25 N 1.28714 * 110.64144 * 359.75613 * 24 23 22 26 26 H 0.96997 * 126.03604 * 180.26995 * 25 24 23 27 27 C 1.47422 * 108.70191 * 358.94070 * 18 17 16 28 28 H 1.09004 * 109.47256 * 182.44497 * 1 2 3 29 29 H 1.08998 * 109.47483 * 302.44509 * 1 2 3 30 30 H 1.08999 * 109.47641 * 62.44696 * 1 2 3 31 31 H 0.97001 * 119.99694 * 117.55288 * 3 2 1 32 32 H 1.09008 * 109.47401 * 300.00491 * 6 4 3 33 33 H 1.09008 * 109.47330 * 60.00110 * 6 4 3 34 34 H 0.96999 * 120.00228 * 180.02562 * 11 10 8 35 35 H 1.09003 * 110.71801 * 271.94078 * 16 2 1 36 36 H 1.09003 * 110.71814 * 35.20983 * 16 2 1 37 37 H 1.09000 * 109.88340 * 97.22892 * 17 16 2 38 38 H 1.09003 * 109.88233 * 218.38857 * 17 16 2 39 39 H 1.08003 * 126.81448 * 359.92793 * 22 21 19 40 40 H 1.08998 * 110.36873 * 265.28987 * 27 18 17 41 41 H 1.09005 * 110.36491 * 142.96394 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0529 1.3685 0.0000 4 6 1.7892 2.1907 -1.0348 5 8 1.1185 1.7978 -1.9658 6 6 2.3267 3.5985 -1.0346 7 16 1.8043 4.4441 -2.5472 8 6 2.5501 6.0197 -2.2903 9 1 3.1230 6.2062 -1.3938 10 6 2.4014 7.0211 -3.2397 11 7 1.7037 6.7936 -4.3324 12 14 3.1928 8.6911 -2.9676 13 1 3.9176 8.6902 -1.6715 14 1 4.1482 8.9717 -4.0693 15 1 2.1413 9.7395 -2.9454 16 6 2.0862 -0.8080 1.2022 17 6 3.4674 -1.2741 0.6959 18 7 3.4271 -1.2430 -0.7735 19 6 4.4475 -1.5615 -1.5942 20 8 4.3002 -1.4997 -2.7999 21 6 5.7407 -1.9838 -1.0312 22 6 6.8691 -2.3380 -1.7230 23 7 7.7898 -2.6443 -0.8087 24 7 7.2910 -2.4974 0.3665 25 7 6.0693 -2.0985 0.2942 26 1 5.4839 -1.9139 1.0453 27 6 2.0852 -0.8066 -1.2004 28 1 -0.3634 -1.0268 0.0438 29 1 -0.3634 0.5513 0.8672 30 1 -0.3634 0.4753 -0.9111 31 1 2.5890 1.6828 0.7448 32 1 1.9410 4.1346 -0.1673 33 1 3.4155 3.5718 -0.9904 34 1 1.6001 7.4933 -4.9962 35 1 2.1922 -0.1700 2.0796 36 1 1.4468 -1.6632 1.4209 37 1 4.2425 -0.5998 1.0598 38 1 3.6650 -2.2894 1.0399 39 1 6.9887 -2.3646 -2.7961 40 1 1.4518 -1.6704 -1.4025 41 1 2.1559 -0.1719 -2.0838 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001722183635.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:48 Heat of formation + Delta-G solvation = 9.792459 kcal Electronic energy + Delta-G solvation = -27013.604027 eV Core-core repulsion = 23056.331402 eV Total energy + Delta-G solvation = -3957.272625 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.55465 -41.79770 -40.39226 -38.74143 -35.75719 -34.61829 -34.57827 -33.14060 -32.39096 -31.03072 -30.01506 -28.07351 -27.67987 -25.77684 -24.02451 -23.86771 -22.49928 -22.02363 -20.74981 -19.92842 -19.31969 -18.21277 -17.83180 -17.68846 -17.48046 -16.90341 -16.85634 -16.73909 -16.30802 -15.91025 -15.49219 -15.09643 -14.86742 -14.71370 -14.53688 -14.24550 -13.98119 -13.65672 -13.41782 -13.31325 -13.18013 -13.12125 -12.92801 -12.71495 -12.59765 -12.49872 -12.34073 -11.92909 -11.88496 -11.72409 -11.55297 -11.17882 -10.77312 -10.74953 -10.28547 -10.26586 -9.88218 -8.67790 -8.36862 -6.14471 -0.31891 1.07616 1.21623 1.25300 1.39380 1.45449 1.55962 1.60926 1.65600 1.82076 2.21122 2.26409 2.94565 2.97512 3.20086 3.30579 3.31296 3.53022 3.78490 3.81553 3.93973 3.96333 4.02874 4.22199 4.25437 4.29576 4.46792 4.54744 4.70585 4.75743 4.80760 4.81380 4.87181 4.99233 5.06603 5.37615 5.39522 5.54695 5.55211 6.08120 6.17507 6.51093 6.67573 7.04716 7.05882 7.26468 8.72492 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012406 B = 0.002923 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.381812 B = 9576.968930 C =10845.801081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.163 3.837 3 N -0.702 5.702 4 C 0.536 3.464 5 O -0.550 6.550 6 C -0.131 4.131 7 S -0.150 6.150 8 C -0.546 4.546 9 H 0.082 0.918 10 C 0.013 3.987 11 N -0.911 5.911 12 Si 0.998 3.002 13 H -0.256 1.256 14 H -0.276 1.276 15 H -0.272 1.272 16 C -0.109 4.109 17 C 0.063 3.937 18 N -0.607 5.607 19 C 0.605 3.395 20 O -0.557 6.557 21 C -0.059 4.059 22 C 0.028 3.972 23 N -0.292 5.292 24 N -0.053 5.053 25 N -0.350 5.350 26 H 0.465 0.535 27 C 0.095 3.905 28 H 0.095 0.905 29 H 0.078 0.922 30 H 0.039 0.961 31 H 0.417 0.583 32 H 0.111 0.889 33 H 0.099 0.901 34 H 0.271 0.729 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.090 0.910 38 H 0.108 0.892 39 H 0.213 0.787 40 H 0.094 0.906 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.010 -20.092 20.576 28.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.076 3.924 3 N -0.357 5.357 4 C 0.322 3.678 5 O -0.427 6.427 6 C -0.282 4.282 7 S 0.077 5.923 8 C -0.694 4.694 9 H 0.100 0.900 10 C -0.192 4.192 11 N -0.547 5.547 12 Si 0.820 3.180 13 H -0.180 1.180 14 H -0.201 1.201 15 H -0.198 1.198 16 C -0.146 4.146 17 C -0.059 4.059 18 N -0.339 5.339 19 C 0.391 3.609 20 O -0.433 6.433 21 C -0.194 4.194 22 C -0.132 4.132 23 N -0.157 5.157 24 N -0.035 5.035 25 N -0.085 5.085 26 H 0.320 0.680 27 C -0.028 4.028 28 H 0.113 0.887 29 H 0.097 0.903 30 H 0.058 0.942 31 H 0.255 0.745 32 H 0.129 0.871 33 H 0.118 0.882 34 H 0.080 0.920 35 H 0.147 0.853 36 H 0.147 0.853 37 H 0.108 0.892 38 H 0.126 0.874 39 H 0.230 0.770 40 H 0.112 0.888 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.034 -21.091 19.062 28.590 hybrid contribution 0.097 2.209 0.273 2.228 sum 3.130 -18.882 19.335 27.206 Atomic orbital electron populations 1.22001 0.92031 1.04116 1.02849 1.21507 0.94867 0.80652 0.95412 1.45708 1.55523 1.12029 1.22464 1.19946 0.79272 0.86376 0.82239 1.90693 1.39235 1.76464 1.36309 1.23381 1.04651 0.96125 1.04073 1.85591 1.70579 1.11584 1.24575 1.23228 1.38412 0.98225 1.09525 0.90033 1.26123 0.95541 1.03580 0.93946 1.70186 1.39469 1.35400 1.09684 0.84918 0.77977 0.76301 0.78832 1.17984 1.20114 1.19775 1.23046 0.93692 1.01504 0.96374 1.22818 1.01390 1.03764 0.77882 1.48337 1.11890 1.65427 1.08289 1.16558 0.81462 0.77604 0.85279 1.90914 1.82269 1.54779 1.15372 1.21990 0.98121 1.14095 0.85145 1.24225 0.87640 0.98835 1.02515 1.75022 1.26721 1.18941 0.94999 1.78138 0.92789 1.13867 1.18693 1.46088 1.11332 1.43145 1.07955 0.67999 1.22767 0.82245 0.98803 0.98953 0.88667 0.90274 0.94165 0.74508 0.87069 0.88234 0.92009 0.85259 0.85313 0.89172 0.87389 0.76996 0.88787 0.92978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 8.59 71.98 0.62 -1.76 16 2 C 0.16 2.37 0.82 5.00 0.00 2.38 16 3 N -0.70 -13.54 5.17 -416.65 -2.16 -15.70 16 4 C 0.54 17.88 7.24 87.65 0.63 18.51 16 5 O -0.55 -23.42 12.67 -3.04 -0.04 -23.46 16 6 C -0.13 -4.97 6.16 71.23 0.44 -4.53 16 7 S -0.15 -8.29 20.57 -56.49 -1.16 -9.45 16 8 C -0.55 -31.13 9.50 67.95 0.65 -30.49 16 9 H 0.08 4.32 7.80 -2.91 -0.02 4.30 16 10 C 0.01 0.73 5.49 84.86 0.47 1.20 16 11 N -0.91 -56.22 13.22 21.65 0.29 -55.94 16 12 Si 1.00 43.70 29.55 68.60 2.03 45.73 16 13 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 14 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 15 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 16 C -0.11 -0.24 5.99 31.78 0.19 -0.05 16 17 C 0.06 0.28 5.12 86.73 0.44 0.72 16 18 N -0.61 -10.31 3.33 -815.89 -2.71 -13.02 16 19 C 0.60 14.32 7.84 86.61 0.68 14.99 16 20 O -0.56 -19.04 17.18 -4.08 -0.07 -19.11 16 21 C -0.06 -1.11 6.98 40.41 0.28 -0.83 16 22 C 0.03 0.58 11.87 84.18 1.00 1.58 16 23 N -0.29 -6.56 12.35 -57.49 -0.71 -7.26 16 24 N -0.05 -0.97 13.35 37.02 0.49 -0.48 16 25 N -0.35 -4.40 6.60 -48.52 -0.32 -4.72 16 26 H 0.46 1.79 5.14 -219.90 -1.13 0.66 16 27 C 0.10 2.05 5.78 86.86 0.50 2.55 16 28 H 0.09 0.94 8.11 -2.39 -0.02 0.92 16 29 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.04 1.03 6.54 -2.39 -0.02 1.02 16 31 H 0.42 4.89 8.49 -92.71 -0.79 4.10 16 32 H 0.11 3.71 8.14 -2.39 -0.02 3.69 16 33 H 0.10 3.52 8.14 -2.39 -0.02 3.50 16 34 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 35 H 0.13 -0.41 8.05 -2.39 -0.02 -0.43 16 36 H 0.13 -0.27 8.01 -2.39 -0.02 -0.29 16 37 H 0.09 0.10 7.12 -2.39 -0.02 0.08 16 38 H 0.11 -0.15 7.30 -2.39 -0.02 -0.17 16 39 H 0.21 3.89 8.06 -2.91 -0.02 3.87 16 40 H 0.09 1.76 8.04 -2.39 -0.02 1.75 16 41 H 0.05 1.76 6.21 -2.38 -0.01 1.75 16 Total: -1.00 -91.02 358.29 0.73 -90.29 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -0.81 Total: 8.83 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: 5.90 Total: 4.28 kcal Atomic # 7 Polarization: -92.00 SS G_CDS: -5.12 Total: -97.12 kcal Atomic # 8 Polarization: -42.46 SS G_CDS: -0.11 Total: -42.57 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: -8.29 SS G_CDS: -1.16 Total: -9.45 kcal Total: -91.02 0.73 -90.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722183635.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.086 kcal (2) G-P(sol) polarization free energy of solvation -91.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds