Wall clock time and date at job start Tue Mar 31 2020 22:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46497 * 110.88711 * 2 1 4 4 C 1.34780 * 119.99566 * 59.30485 * 3 2 1 5 5 O 1.21280 * 120.00423 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99795 * 180.02562 * 4 3 2 7 7 S 1.81002 * 109.47156 * 179.97438 * 6 4 3 8 8 C 1.76193 * 100.00049 * 180.02562 * 7 6 4 9 9 H 1.08005 * 120.00026 * 359.97438 * 8 7 6 10 10 C 1.38806 * 120.00056 * 180.02562 * 8 7 6 11 11 N 1.31631 * 120.00121 * 179.97438 * 10 8 7 12 12 Si 1.86799 * 119.99856 * 0.02562 * 10 8 7 13 13 H 1.48489 * 109.47437 * 89.99924 * 12 10 8 14 14 H 1.48500 * 109.46931 * 210.00082 * 12 10 8 15 15 H 1.48503 * 109.46655 * 329.99597 * 12 10 8 16 16 C 1.55156 * 111.00398 * 236.12182 * 2 1 3 17 17 C 1.54426 * 102.89614 * 206.40572 * 16 2 1 18 18 N 1.47019 * 107.27728 * 22.18862 * 17 16 2 19 19 C 1.34780 * 125.64388 * 181.02270 * 18 17 16 20 20 O 1.21620 * 119.99539 * 180.02562 * 19 18 17 21 21 C 1.47226 * 120.00259 * 0.04267 * 19 18 17 22 22 C 1.37005 * 127.19124 * 179.68399 * 21 19 18 23 23 N 1.33323 * 106.37323 * 179.90304 * 22 21 19 24 24 N 1.28504 * 109.43635 * 0.37089 * 23 22 21 25 25 N 1.28710 * 110.64326 * 359.76127 * 24 23 22 26 26 H 0.97000 * 126.03696 * 179.97438 * 25 24 23 27 27 C 1.47418 * 108.70769 * 1.05873 * 18 17 16 28 28 H 1.09000 * 109.46915 * 60.70003 * 1 2 3 29 29 H 1.08999 * 109.46883 * 180.70005 * 1 2 3 30 30 H 1.09000 * 109.46815 * 300.69826 * 1 2 3 31 31 H 0.96995 * 120.00423 * 239.29791 * 3 2 1 32 32 H 1.09002 * 109.47060 * 299.99722 * 6 4 3 33 33 H 1.09001 * 109.47380 * 59.99809 * 6 4 3 34 34 H 0.96999 * 120.00138 * 179.97438 * 11 10 8 35 35 H 1.09001 * 110.72049 * 324.75450 * 16 2 1 36 36 H 1.09007 * 110.71926 * 88.02107 * 16 2 1 37 37 H 1.08994 * 109.87577 * 262.76623 * 17 16 2 38 38 H 1.09008 * 110.00651 * 141.67750 * 17 16 2 39 39 H 1.08006 * 126.81564 * 0.02562 * 22 21 19 40 40 H 1.09001 * 110.36978 * 217.03190 * 27 18 17 41 41 H 1.09001 * 110.36815 * 94.71411 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0524 1.3687 0.0000 4 6 1.7359 2.2107 1.0037 5 8 1.0184 1.8354 1.9067 6 6 2.2727 3.6188 1.0035 7 16 1.6734 4.4932 2.4706 8 6 2.4301 6.0646 2.2207 9 1 3.0477 6.2344 1.3510 10 6 2.2335 7.0841 3.1419 11 7 2.7992 8.2579 2.9555 12 14 1.1671 6.7898 4.6471 13 1 2.0101 6.2838 5.7598 14 1 0.5229 8.0643 5.0542 15 1 0.1203 5.7873 4.3237 16 6 2.0862 -0.8074 -1.2026 17 6 3.4684 -1.2732 -0.6953 18 7 3.4275 -1.2420 0.7740 19 6 4.4480 -1.5600 1.5950 20 8 4.3003 -1.4983 2.8006 21 6 5.7415 -1.9817 1.0325 22 6 6.8715 -2.3301 1.7245 23 7 7.7911 -2.6409 0.8105 24 7 7.2923 -2.4950 -0.3647 25 7 6.0687 -2.1022 -0.2928 26 1 5.4818 -1.9228 -1.0440 27 6 2.0854 -0.8063 1.2005 28 1 -0.3633 0.5029 -0.8962 29 1 -0.3633 -1.0276 0.0126 30 1 -0.3633 0.5246 0.8837 31 1 2.6260 1.6690 -0.7222 32 1 3.3623 3.5923 1.0157 33 1 1.9319 4.1375 0.1074 34 1 2.6615 8.9704 3.5991 35 1 1.4471 -1.6629 -1.4213 36 1 2.1916 -0.1692 -2.0799 37 1 4.2433 -0.5984 -1.0590 38 1 3.6693 -2.2879 -1.0391 39 1 6.9927 -2.3509 2.7975 40 1 2.1554 -0.1716 2.0839 41 1 1.4523 -1.6703 1.4026 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001722183636.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:52 Heat of formation + Delta-G solvation = 41.370052 kcal Electronic energy + Delta-G solvation = -27038.696051 eV Core-core repulsion = 23082.792733 eV Total energy + Delta-G solvation = -3955.903318 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.80693 -41.00521 -39.38875 -37.83444 -34.89346 -33.78231 -32.47809 -32.22958 -31.59917 -30.45876 -28.83047 -27.32666 -25.65545 -25.11684 -23.30662 -23.19490 -21.62123 -21.28961 -19.82517 -18.74225 -17.91009 -17.44891 -17.04945 -16.71498 -16.48671 -16.10691 -15.79724 -15.18414 -15.00797 -14.78858 -14.52828 -14.06089 -13.99818 -13.60938 -13.55137 -13.07074 -12.91278 -12.83083 -12.66123 -12.59292 -12.30130 -11.99555 -11.94202 -11.63621 -11.32703 -11.24822 -11.18887 -11.03694 -10.66353 -10.64088 -9.97051 -9.89183 -9.56320 -9.39800 -9.10652 -9.03056 -8.55890 -6.96554 -6.32562 -4.04908 0.44679 1.87882 1.91236 2.29823 2.61214 2.64620 2.79456 3.15738 3.31493 3.47173 3.55192 3.56336 3.73146 3.87162 4.11762 4.23951 4.29695 4.40327 4.54553 4.55423 4.65751 4.72901 4.86572 5.01996 5.06652 5.12487 5.17815 5.30437 5.42886 5.51059 5.54960 5.64305 5.65501 5.70329 5.91500 6.08002 6.09354 6.38245 6.78889 7.40354 7.48555 7.82533 7.90288 8.32106 8.37379 9.13458 10.76683 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013328 B = 0.002962 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.375446 B = 9451.160342 C =10509.973835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.167 3.833 3 N -0.726 5.726 4 C 0.535 3.465 5 O -0.510 6.510 6 C -0.125 4.125 7 S -0.137 6.137 8 C -0.523 4.523 9 H 0.088 0.912 10 C 0.096 3.904 11 N -0.880 5.880 12 Si 0.857 3.143 13 H -0.266 1.266 14 H -0.274 1.274 15 H -0.235 1.235 16 C -0.128 4.128 17 C 0.079 3.921 18 N -0.613 5.613 19 C 0.609 3.391 20 O -0.501 6.501 21 C -0.061 4.061 22 C 0.036 3.964 23 N -0.268 5.268 24 N -0.049 5.049 25 N -0.380 5.380 26 H 0.448 0.552 27 C 0.100 3.900 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.400 0.600 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.271 0.729 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.207 0.793 40 H 0.104 0.896 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.112 -23.260 -13.253 26.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.079 3.921 3 N -0.381 5.381 4 C 0.322 3.678 5 O -0.383 6.383 6 C -0.276 4.276 7 S 0.089 5.911 8 C -0.671 4.671 9 H 0.106 0.894 10 C -0.113 4.113 11 N -0.516 5.516 12 Si 0.681 3.319 13 H -0.191 1.191 14 H -0.199 1.199 15 H -0.159 1.159 16 C -0.166 4.166 17 C -0.045 4.045 18 N -0.348 5.348 19 C 0.394 3.606 20 O -0.373 6.373 21 C -0.196 4.196 22 C -0.123 4.123 23 N -0.133 5.133 24 N -0.031 5.031 25 N -0.111 5.111 26 H 0.299 0.701 27 C -0.022 4.022 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.234 0.766 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.081 0.919 35 H 0.119 0.881 36 H 0.115 0.885 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.223 0.777 40 H 0.122 0.878 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.070 -24.084 -11.767 26.805 hybrid contribution -0.315 1.225 -0.707 1.449 sum -0.385 -22.859 -12.474 26.044 Atomic orbital electron populations 1.22060 0.91927 1.02843 1.04684 1.21298 0.94969 0.81986 0.93834 1.45945 1.53763 1.11347 1.27082 1.20282 0.79918 0.86597 0.81014 1.90678 1.35650 1.76919 1.35085 1.23284 1.04383 0.94358 1.05563 1.84799 1.67047 1.11458 1.27796 1.22302 1.35860 0.95280 1.13634 0.89446 1.24715 0.94875 0.93982 0.97697 1.69934 1.42407 1.02743 1.36529 0.86735 0.82362 0.79371 0.83390 1.19141 1.19906 1.15920 1.22979 0.94481 1.01105 0.98035 1.22343 0.99969 1.00990 0.81178 1.48290 1.13131 1.67184 1.06167 1.16340 0.80618 0.77898 0.85696 1.90937 1.81272 1.52177 1.12902 1.22323 0.99067 1.13802 0.84366 1.23977 0.87476 0.98942 1.01926 1.75021 1.26060 1.17653 0.94533 1.78208 0.91981 1.13845 1.19086 1.46174 1.11779 1.44912 1.08244 0.70075 1.22829 0.81051 0.98842 0.99503 0.91644 0.91470 0.89295 0.76591 0.88701 0.88452 0.91887 0.88104 0.88454 0.91114 0.90812 0.77670 0.87797 0.89847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 8.57 37.16 0.32 -0.98 16 2 C 0.17 1.33 0.82 -129.67 -0.11 1.22 16 3 N -0.73 -7.26 5.18 -45.62 -0.24 -7.49 16 4 C 0.54 8.33 7.22 -10.98 -0.08 8.25 16 5 O -0.51 -9.59 12.67 5.56 0.07 -9.52 16 6 C -0.13 -2.27 6.16 36.01 0.22 -2.05 16 7 S -0.14 -3.37 18.55 -107.50 -1.99 -5.37 16 8 C -0.52 -14.85 10.04 30.94 0.31 -14.54 16 9 H 0.09 2.59 8.03 -52.48 -0.42 2.17 16 10 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 11 N -0.88 -26.39 13.97 55.49 0.78 -25.61 16 12 Si 0.86 21.61 27.74 -169.99 -4.72 16.90 16 13 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 14 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 15 H -0.24 -5.88 6.74 56.52 0.38 -5.50 16 16 C -0.13 -0.45 5.99 -24.84 -0.15 -0.59 16 17 C 0.08 0.32 5.13 -3.01 -0.02 0.31 16 18 N -0.61 -5.35 3.33 -171.80 -0.57 -5.92 16 19 C 0.61 6.91 7.84 -12.61 -0.10 6.81 16 20 O -0.50 -7.72 17.18 5.26 0.09 -7.63 16 21 C -0.06 -0.59 6.98 -82.34 -0.57 -1.17 16 22 C 0.04 0.37 11.87 -17.35 -0.21 0.16 16 23 N -0.27 -3.06 12.35 30.48 0.38 -2.68 16 24 N -0.05 -0.49 13.35 60.35 0.81 0.31 16 25 N -0.38 -2.81 6.60 33.31 0.22 -2.59 16 26 H 0.45 1.70 5.14 -190.33 -0.98 0.72 16 27 C 0.10 1.02 5.81 -2.53 -0.01 1.00 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.41 8.13 -51.93 -0.42 -0.01 16 30 H 0.09 1.07 6.23 -51.93 -0.32 0.75 16 31 H 0.40 2.90 8.50 -40.82 -0.35 2.55 16 32 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 33 H 0.10 1.62 8.14 -51.91 -0.42 1.20 16 34 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 35 H 0.10 0.21 8.04 -51.93 -0.42 -0.21 16 36 H 0.10 0.18 8.07 -51.93 -0.42 -0.24 16 37 H 0.07 0.21 7.13 -51.93 -0.37 -0.16 16 38 H 0.07 0.14 7.27 -51.92 -0.38 -0.24 16 39 H 0.21 1.72 8.06 -52.48 -0.42 1.30 16 40 H 0.10 1.53 6.48 -51.93 -0.34 1.19 16 41 H 0.08 0.74 8.03 -51.93 -0.42 0.32 16 LS Contribution 355.62 15.07 5.36 5.36 Total: -1.00 -37.34 355.62 -5.98 -43.33 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -5.68 Total: -0.20 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: -0.49 Total: 1.12 kcal Atomic # 7 Polarization: -45.35 SS G_CDS: 1.37 Total: -43.98 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: 0.16 Total: -17.15 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.72 Total: 16.90 kcal Atomic # 16 Polarization: -3.37 SS G_CDS: -1.99 Total: -5.37 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -37.34 -5.98 -43.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722183636.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.695 kcal (2) G-P(sol) polarization free energy of solvation -37.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds