Wall clock time and date at job start Tue Mar 31 2020 22:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46497 * 110.88711 * 2 1 4 4 C 1.34780 * 119.99566 * 59.30485 * 3 2 1 5 5 O 1.21280 * 120.00423 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99795 * 180.02562 * 4 3 2 7 7 S 1.81002 * 109.47156 * 179.97438 * 6 4 3 8 8 C 1.76193 * 100.00049 * 180.02562 * 7 6 4 9 9 H 1.08005 * 120.00026 * 359.97438 * 8 7 6 10 10 C 1.38806 * 120.00056 * 180.02562 * 8 7 6 11 11 N 1.31631 * 120.00121 * 179.97438 * 10 8 7 12 12 Si 1.86799 * 119.99856 * 0.02562 * 10 8 7 13 13 H 1.48489 * 109.47437 * 89.99924 * 12 10 8 14 14 H 1.48500 * 109.46931 * 210.00082 * 12 10 8 15 15 H 1.48503 * 109.46655 * 329.99597 * 12 10 8 16 16 C 1.55156 * 111.00398 * 236.12182 * 2 1 3 17 17 C 1.54426 * 102.89614 * 206.40572 * 16 2 1 18 18 N 1.47019 * 107.27728 * 22.18862 * 17 16 2 19 19 C 1.34780 * 125.64388 * 181.02270 * 18 17 16 20 20 O 1.21620 * 119.99539 * 180.02562 * 19 18 17 21 21 C 1.47226 * 120.00259 * 0.04267 * 19 18 17 22 22 C 1.37005 * 127.19124 * 179.68399 * 21 19 18 23 23 N 1.33323 * 106.37323 * 179.90304 * 22 21 19 24 24 N 1.28504 * 109.43635 * 0.37089 * 23 22 21 25 25 N 1.28710 * 110.64326 * 359.76127 * 24 23 22 26 26 H 0.97000 * 126.03696 * 179.97438 * 25 24 23 27 27 C 1.47418 * 108.70769 * 1.05873 * 18 17 16 28 28 H 1.09000 * 109.46915 * 60.70003 * 1 2 3 29 29 H 1.08999 * 109.46883 * 180.70005 * 1 2 3 30 30 H 1.09000 * 109.46815 * 300.69826 * 1 2 3 31 31 H 0.96995 * 120.00423 * 239.29791 * 3 2 1 32 32 H 1.09002 * 109.47060 * 299.99722 * 6 4 3 33 33 H 1.09001 * 109.47380 * 59.99809 * 6 4 3 34 34 H 0.96999 * 120.00138 * 179.97438 * 11 10 8 35 35 H 1.09001 * 110.72049 * 324.75450 * 16 2 1 36 36 H 1.09007 * 110.71926 * 88.02107 * 16 2 1 37 37 H 1.08994 * 109.87577 * 262.76623 * 17 16 2 38 38 H 1.09008 * 110.00651 * 141.67750 * 17 16 2 39 39 H 1.08006 * 126.81564 * 0.02562 * 22 21 19 40 40 H 1.09001 * 110.36978 * 217.03190 * 27 18 17 41 41 H 1.09001 * 110.36815 * 94.71411 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0524 1.3687 0.0000 4 6 1.7359 2.2107 1.0037 5 8 1.0184 1.8354 1.9067 6 6 2.2727 3.6188 1.0035 7 16 1.6734 4.4932 2.4706 8 6 2.4301 6.0646 2.2207 9 1 3.0477 6.2344 1.3510 10 6 2.2335 7.0841 3.1419 11 7 2.7992 8.2579 2.9555 12 14 1.1671 6.7898 4.6471 13 1 2.0101 6.2838 5.7598 14 1 0.5229 8.0643 5.0542 15 1 0.1203 5.7873 4.3237 16 6 2.0862 -0.8074 -1.2026 17 6 3.4684 -1.2732 -0.6953 18 7 3.4275 -1.2420 0.7740 19 6 4.4480 -1.5600 1.5950 20 8 4.3003 -1.4983 2.8006 21 6 5.7415 -1.9817 1.0325 22 6 6.8715 -2.3301 1.7245 23 7 7.7911 -2.6409 0.8105 24 7 7.2923 -2.4950 -0.3647 25 7 6.0687 -2.1022 -0.2928 26 1 5.4818 -1.9228 -1.0440 27 6 2.0854 -0.8063 1.2005 28 1 -0.3633 0.5029 -0.8962 29 1 -0.3633 -1.0276 0.0126 30 1 -0.3633 0.5246 0.8837 31 1 2.6260 1.6690 -0.7222 32 1 3.3623 3.5923 1.0157 33 1 1.9319 4.1375 0.1074 34 1 2.6615 8.9704 3.5991 35 1 1.4471 -1.6629 -1.4213 36 1 2.1916 -0.1692 -2.0799 37 1 4.2433 -0.5984 -1.0590 38 1 3.6693 -2.2879 -1.0391 39 1 6.9927 -2.3509 2.7975 40 1 2.1554 -0.1716 2.0839 41 1 1.4523 -1.6703 1.4026 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001722183636.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:51 Heat of formation + Delta-G solvation = 10.404746 kcal Electronic energy + Delta-G solvation = -27040.038807 eV Core-core repulsion = 23082.792733 eV Total energy + Delta-G solvation = -3957.246074 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.55629 -41.81142 -40.42657 -38.76064 -35.76448 -34.70010 -34.59168 -33.16567 -32.40469 -31.04376 -30.06482 -28.07300 -27.87243 -25.78436 -24.03176 -23.87015 -22.55233 -22.02471 -20.76675 -19.98285 -19.32840 -18.22193 -17.87460 -17.70917 -17.50428 -17.12903 -16.85508 -16.72991 -16.35941 -15.82054 -15.49298 -15.08503 -15.01952 -14.82329 -14.71553 -14.28730 -14.02023 -13.67809 -13.42691 -13.37556 -13.33666 -13.16196 -13.00923 -12.76588 -12.61439 -12.48363 -12.34373 -11.93870 -11.89434 -11.87916 -11.55445 -11.19797 -10.78169 -10.77309 -10.55366 -10.30756 -9.88382 -9.01180 -8.54216 -6.24449 -0.31864 0.96991 1.07804 1.21665 1.29610 1.44189 1.53219 1.55735 1.64691 1.81862 2.16766 2.23041 2.69128 2.84368 2.94357 3.20622 3.30481 3.52328 3.77702 3.80994 3.84939 3.95627 4.02215 4.18094 4.24694 4.25973 4.42771 4.53380 4.68425 4.75875 4.80801 4.81670 4.86983 4.98425 5.06617 5.38405 5.52896 5.54761 5.67966 6.07040 6.08507 6.46512 6.66895 6.91281 7.06123 7.20147 8.58282 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013328 B = 0.002962 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.375446 B = 9451.160342 C =10509.973835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.163 3.837 3 N -0.702 5.702 4 C 0.538 3.462 5 O -0.547 6.547 6 C -0.113 4.113 7 S -0.175 6.175 8 C -0.529 4.529 9 H 0.061 0.939 10 C 0.046 3.954 11 N -0.917 5.917 12 Si 0.913 3.087 13 H -0.266 1.266 14 H -0.258 1.258 15 H -0.235 1.235 16 C -0.109 4.109 17 C 0.063 3.937 18 N -0.607 5.607 19 C 0.606 3.394 20 O -0.556 6.556 21 C -0.059 4.059 22 C 0.028 3.972 23 N -0.293 5.293 24 N -0.054 5.054 25 N -0.351 5.351 26 H 0.464 0.536 27 C 0.098 3.902 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.045 0.955 31 H 0.417 0.583 32 H 0.103 0.897 33 H 0.115 0.885 34 H 0.277 0.723 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.090 0.910 38 H 0.107 0.893 39 H 0.214 0.786 40 H 0.052 0.948 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.723 -25.349 -16.160 30.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.076 3.924 3 N -0.356 5.356 4 C 0.323 3.677 5 O -0.424 6.424 6 C -0.264 4.264 7 S 0.052 5.948 8 C -0.677 4.677 9 H 0.080 0.920 10 C -0.160 4.160 11 N -0.555 5.555 12 Si 0.735 3.265 13 H -0.191 1.191 14 H -0.182 1.182 15 H -0.159 1.159 16 C -0.147 4.147 17 C -0.059 4.059 18 N -0.340 5.340 19 C 0.392 3.608 20 O -0.432 6.432 21 C -0.194 4.194 22 C -0.132 4.132 23 N -0.158 5.158 24 N -0.036 5.036 25 N -0.086 5.086 26 H 0.320 0.680 27 C -0.025 4.025 28 H 0.097 0.903 29 H 0.111 0.889 30 H 0.064 0.936 31 H 0.255 0.745 32 H 0.121 0.879 33 H 0.134 0.866 34 H 0.086 0.914 35 H 0.147 0.853 36 H 0.146 0.854 37 H 0.108 0.892 38 H 0.125 0.875 39 H 0.231 0.769 40 H 0.070 0.930 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.675 -26.187 -14.796 30.085 hybrid contribution -0.107 1.785 0.037 1.789 sum -0.782 -24.402 -14.760 28.529 Atomic orbital electron populations 1.22018 0.91876 1.04087 1.03185 1.21521 0.94996 0.80495 0.95409 1.45701 1.52747 1.11577 1.25618 1.19845 0.79790 0.86135 0.81938 1.90686 1.37509 1.77323 1.36877 1.23284 1.04800 0.95728 1.02570 1.84723 1.67425 1.10214 1.32439 1.22465 1.35330 0.97247 1.12628 0.92037 1.25558 0.96115 0.93853 1.00431 1.70012 1.43924 1.03680 1.37902 0.85883 0.80865 0.79801 0.79932 1.19065 1.18228 1.15865 1.23061 0.93678 1.01528 0.96418 1.22829 1.01364 1.03755 0.77941 1.48333 1.11907 1.65493 1.08239 1.16524 0.81396 0.77570 0.85274 1.90910 1.82252 1.54770 1.15275 1.22007 0.98162 1.14127 0.85107 1.24234 0.87668 0.98796 1.02530 1.75021 1.26863 1.18851 0.95024 1.78143 0.92742 1.13992 1.18705 1.46099 1.11191 1.43255 1.08010 0.68009 1.22760 0.82188 0.98857 0.98740 0.90308 0.88864 0.93592 0.74501 0.87858 0.86644 0.91356 0.85332 0.85377 0.89208 0.87466 0.76942 0.92952 0.88663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 8.57 71.98 0.62 -1.53 16 2 C 0.16 2.09 0.82 5.00 0.00 2.10 16 3 N -0.70 -12.25 5.18 -416.64 -2.16 -14.40 16 4 C 0.54 16.36 7.22 87.66 0.63 16.99 16 5 O -0.55 -21.00 12.67 -3.03 -0.04 -21.04 16 6 C -0.11 -4.02 6.16 71.24 0.44 -3.58 16 7 S -0.17 -8.69 18.55 -56.49 -1.05 -9.73 16 8 C -0.53 -30.68 10.04 67.96 0.68 -29.99 16 9 H 0.06 3.76 8.03 -2.91 -0.02 3.73 16 10 C 0.05 2.70 5.50 84.86 0.47 3.16 16 11 N -0.92 -55.96 13.97 21.65 0.30 -55.66 16 12 Si 0.91 45.21 27.74 68.60 1.90 47.11 16 13 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 14 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 15 H -0.23 -11.52 6.74 99.48 0.67 -10.85 16 16 C -0.11 -0.12 5.99 31.82 0.19 0.07 16 17 C 0.06 0.21 5.13 86.77 0.45 0.65 16 18 N -0.61 -9.26 3.33 -815.71 -2.71 -11.97 16 19 C 0.61 13.32 7.84 86.60 0.68 14.00 16 20 O -0.56 -17.81 17.18 -4.09 -0.07 -17.88 16 21 C -0.06 -1.05 6.98 40.40 0.28 -0.77 16 22 C 0.03 0.55 11.87 84.18 1.00 1.55 16 23 N -0.29 -6.41 12.35 -57.50 -0.71 -7.12 16 24 N -0.05 -0.97 13.35 37.02 0.49 -0.47 16 25 N -0.35 -4.16 6.60 -48.53 -0.32 -4.48 16 26 H 0.46 1.49 5.14 -219.90 -1.13 0.36 16 27 C 0.10 1.87 5.81 86.86 0.50 2.37 16 28 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.09 0.81 8.13 -2.39 -0.02 0.79 16 30 H 0.04 1.09 6.23 -2.39 -0.01 1.07 16 31 H 0.42 4.39 8.50 -92.71 -0.79 3.61 16 32 H 0.10 3.51 8.14 -2.39 -0.02 3.49 16 33 H 0.12 3.69 8.14 -2.40 -0.02 3.67 16 34 H 0.28 15.64 8.31 -92.71 -0.77 14.86 16 35 H 0.13 -0.39 8.04 -2.39 -0.02 -0.41 16 36 H 0.13 -0.48 8.07 -2.38 -0.02 -0.50 16 37 H 0.09 0.02 7.13 -2.39 -0.02 0.00 16 38 H 0.11 -0.25 7.27 -2.38 -0.02 -0.26 16 39 H 0.21 3.67 8.06 -2.91 -0.02 3.65 16 40 H 0.05 1.60 6.48 -2.39 -0.02 1.59 16 41 H 0.10 1.57 8.03 -2.39 -0.02 1.55 16 Total: -1.00 -87.68 355.62 0.73 -86.95 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -0.85 Total: 3.70 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: 5.94 Total: 5.01 kcal Atomic # 7 Polarization: -89.01 SS G_CDS: -5.10 Total: -94.11 kcal Atomic # 8 Polarization: -38.81 SS G_CDS: -0.11 Total: -38.92 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 1.90 Total: 47.11 kcal Atomic # 16 Polarization: -8.69 SS G_CDS: -1.05 Total: -9.73 kcal Total: -87.68 0.73 -86.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722183636.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.355 kcal (2) G-P(sol) polarization free energy of solvation -87.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds