Wall clock time and date at job start Tue Mar 31 2020 22:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 110.78299 * 2 1 4 4 C 1.34768 * 119.99627 * 298.21461 * 3 2 1 5 5 O 1.21617 * 120.00541 * 359.97438 * 4 3 2 6 6 C 1.47241 * 119.99747 * 179.97438 * 4 3 2 7 7 C 1.37008 * 127.18791 * 179.68050 * 6 4 3 8 8 N 1.33326 * 106.36927 * 179.90397 * 7 6 4 9 9 N 1.28507 * 109.43843 * 0.37760 * 8 7 6 10 10 N 1.28713 * 110.64210 * 359.75763 * 9 8 7 11 11 H 0.97002 * 126.03975 * 179.97438 * 10 9 8 12 12 C 1.55165 * 110.71789 * 123.23827 * 2 1 3 13 13 C 1.54915 * 101.57980 * 153.86302 * 12 2 1 14 14 N 1.47425 * 104.83334 * 322.99105 * 13 12 2 15 15 C 1.34777 * 125.65136 * 204.16738 * 14 13 12 16 16 O 1.21281 * 120.00173 * 179.97438 * 15 14 13 17 17 C 1.50706 * 119.99667 * 359.95409 * 15 14 13 18 18 S 1.80995 * 109.46960 * 180.02562 * 17 15 14 19 19 C 1.76200 * 100.00030 * 179.97438 * 18 17 15 20 20 H 1.08001 * 119.99969 * 0.02562 * 19 18 17 21 21 C 1.38793 * 120.00079 * 180.02562 * 19 18 17 22 22 N 1.31634 * 120.00281 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 120.00168 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46879 * 90.00208 * 23 21 19 25 25 H 1.48506 * 109.47328 * 210.00270 * 23 21 19 26 26 H 1.48501 * 109.47207 * 330.00174 * 23 21 19 27 27 C 1.47022 * 108.70334 * 24.12789 * 14 13 12 28 28 H 1.08999 * 109.47239 * 181.78862 * 1 2 3 29 29 H 1.09007 * 109.46791 * 301.78847 * 1 2 3 30 30 H 1.08997 * 109.47298 * 61.78055 * 1 2 3 31 31 H 0.97000 * 119.99673 * 118.21257 * 3 2 1 32 32 H 1.07999 * 126.81115 * 0.02562 * 7 6 4 33 33 H 1.08995 * 111.00547 * 271.93634 * 12 2 1 34 34 H 1.09001 * 111.00003 * 35.79214 * 12 2 1 35 35 H 1.08997 * 110.36462 * 204.15099 * 13 12 2 36 36 H 1.08999 * 110.46102 * 81.87572 * 13 12 2 37 37 H 1.08997 * 109.46784 * 300.00107 * 17 15 14 38 38 H 1.09002 * 109.46871 * 60.00068 * 17 15 14 39 39 H 0.97000 * 120.00498 * 179.97438 * 22 21 19 40 40 H 1.08997 * 109.88723 * 239.52626 * 27 14 13 41 41 H 1.08998 * 109.88661 * 118.35607 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0498 1.3697 0.0000 4 6 1.7730 2.1954 -1.0285 5 8 1.0921 1.8035 -1.9568 6 6 2.2949 3.5722 -1.0282 7 6 2.1113 4.5277 -1.9929 8 7 2.7585 5.6150 -1.5728 9 7 3.3148 5.3708 -0.4404 10 7 3.0710 4.1637 -0.0661 11 1 3.3820 3.7462 0.7524 12 6 2.0789 -0.7955 1.2139 13 6 3.4632 -1.2499 0.6876 14 7 3.2445 -1.5508 -0.7390 15 6 3.9913 -2.3848 -1.4894 16 8 3.7178 -2.5581 -2.6582 17 6 5.1667 -3.1017 -0.8762 18 16 5.9612 -4.1387 -2.1288 19 6 7.2621 -4.8374 -1.1674 20 1 7.3653 -4.5730 -0.1253 21 6 8.1541 -5.7274 -1.7492 22 7 9.1256 -6.2498 -1.0308 23 14 7.9751 -6.1852 -3.5514 24 1 8.7619 -5.2392 -4.3828 25 1 8.4775 -7.5665 -3.7635 26 1 6.5438 -6.1139 -3.9405 27 6 2.0760 -0.7913 -1.2072 28 1 -0.3634 -1.0271 0.0321 29 1 -0.3633 0.5414 0.8736 30 1 -0.3634 0.4859 -0.9055 31 1 2.5932 1.6822 0.7403 32 1 1.5515 4.4217 -2.9104 33 1 2.1849 -0.1519 2.0871 34 1 1.4450 -1.6536 1.4375 35 1 3.7959 -2.1427 1.2170 36 1 4.1946 -0.4493 0.7985 37 1 5.8834 -2.3705 -0.5024 38 1 4.8216 -3.7264 -0.0523 39 1 9.7488 -6.8721 -1.4373 40 1 1.3129 -1.4758 -1.5775 41 1 2.3740 -0.1025 -1.9977 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001722208358.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:01 Heat of formation + Delta-G solvation = 35.487476 kcal Electronic energy + Delta-G solvation = -26647.509019 eV Core-core repulsion = 22691.350613 eV Total energy + Delta-G solvation = -3956.158406 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.87148 -41.08443 -39.39295 -37.68081 -34.93129 -34.01188 -32.49179 -32.45487 -31.30385 -30.07212 -29.64196 -26.38626 -25.63021 -25.14750 -23.68928 -23.37199 -21.92928 -20.39408 -20.05047 -19.39256 -17.88251 -17.25602 -16.96173 -16.89947 -16.72069 -15.87500 -15.45950 -15.10756 -15.01834 -14.80576 -14.72747 -14.23706 -14.06620 -13.83683 -13.24676 -13.07948 -12.83096 -12.80937 -12.69618 -12.57260 -12.03104 -11.98401 -11.81752 -11.78653 -11.42246 -11.30068 -11.28967 -11.04062 -10.67659 -10.55611 -10.08282 -9.92333 -9.82793 -9.57190 -9.04366 -8.70818 -8.54672 -6.97291 -6.33268 -4.05599 0.33493 1.78878 1.85657 2.24517 2.51149 2.60443 2.86483 3.12017 3.30677 3.47984 3.54376 3.68076 3.79034 4.04299 4.13582 4.29588 4.32270 4.44496 4.62023 4.62407 4.74380 4.82990 5.04921 5.05868 5.06381 5.15892 5.27031 5.33247 5.38563 5.47754 5.48882 5.67889 5.71246 5.78158 5.91196 5.91665 6.00093 6.19252 6.67380 7.39318 7.44711 7.73130 7.89625 8.34901 8.36325 9.12959 10.75844 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.016230 B = 0.002491 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.791706 B =11236.125549 C =11833.169162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.164 3.836 3 N -0.714 5.714 4 C 0.599 3.401 5 O -0.500 6.500 6 C -0.068 4.068 7 C 0.038 3.962 8 N -0.268 5.268 9 N -0.043 5.043 10 N -0.375 5.375 11 H 0.450 0.550 12 C -0.133 4.133 13 C 0.097 3.903 14 N -0.626 5.626 15 C 0.546 3.454 16 O -0.512 6.512 17 C -0.117 4.117 18 S -0.141 6.141 19 C -0.522 4.522 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.880 5.880 23 Si 0.856 3.144 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.107 3.893 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.396 0.604 32 H 0.206 0.794 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.067 0.933 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.271 0.729 40 H 0.080 0.920 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.868 18.641 9.607 27.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.078 3.922 3 N -0.366 5.366 4 C 0.383 3.617 5 O -0.372 6.372 6 C -0.203 4.203 7 C -0.122 4.122 8 N -0.133 5.133 9 N -0.025 5.025 10 N -0.102 5.102 11 H 0.297 0.703 12 C -0.171 4.171 13 C -0.027 4.027 14 N -0.364 5.364 15 C 0.334 3.666 16 O -0.386 6.386 17 C -0.268 4.268 18 S 0.085 5.915 19 C -0.669 4.669 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.516 5.516 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.016 4.016 28 H 0.093 0.907 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.231 0.769 32 H 0.223 0.777 33 H 0.110 0.890 34 H 0.119 0.881 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.113 0.887 38 H 0.115 0.885 39 H 0.081 0.919 40 H 0.099 0.901 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.919 19.250 7.350 27.307 hybrid contribution 0.642 -1.197 1.479 2.008 sum -17.278 18.053 8.829 26.502 Atomic orbital electron populations 1.22089 0.91920 1.03492 1.03819 1.21368 0.94857 0.79934 0.96051 1.45910 1.54648 1.13015 1.23069 1.16717 0.80190 0.82026 0.82802 1.90899 1.37223 1.74650 1.34420 1.22383 1.05694 0.97650 0.94541 1.23984 1.00055 0.87734 1.00413 1.75046 1.10184 1.24153 1.03942 1.78258 1.17767 0.97035 1.09467 1.45602 1.34852 1.10576 1.19181 0.70325 1.23169 0.96864 1.00748 0.96325 1.22345 0.96657 1.01626 0.82031 1.48472 1.30856 1.46026 1.11009 1.20023 0.82767 0.77870 0.85922 1.90728 1.69655 1.62246 1.15958 1.23252 0.97407 1.02111 1.03985 1.84854 1.36085 1.54226 1.16295 1.22287 1.13622 1.31374 0.99627 0.89410 1.24706 0.93751 0.94278 0.98528 1.69933 1.15464 1.29560 1.36686 0.86742 0.81652 0.78729 0.84790 1.19173 1.19876 1.15888 1.22244 0.88567 0.94806 0.96020 0.90682 0.91813 0.90077 0.76942 0.77715 0.89042 0.88118 0.89480 0.91432 0.88706 0.88504 0.91892 0.90135 0.90290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 8.41 37.16 0.31 -0.64 16 2 C 0.16 1.09 0.81 -129.98 -0.10 0.99 16 3 N -0.71 -3.77 5.14 -47.03 -0.24 -4.02 16 4 C 0.60 4.74 7.03 -12.61 -0.09 4.65 16 5 O -0.50 -5.62 13.88 5.26 0.07 -5.55 16 6 C -0.07 -0.49 7.17 -82.33 -0.59 -1.08 16 7 C 0.04 0.32 11.87 -17.35 -0.21 0.11 16 8 N -0.27 -2.72 12.35 30.47 0.38 -2.34 16 9 N -0.04 -0.38 13.35 60.35 0.81 0.43 16 10 N -0.37 -2.02 6.97 33.31 0.23 -1.79 16 11 H 0.45 0.52 8.32 -190.33 -1.58 -1.06 16 12 C -0.13 -0.62 6.09 -24.57 -0.15 -0.77 16 13 C 0.10 0.76 6.67 -2.53 -0.02 0.74 16 14 N -0.63 -7.94 3.33 -170.51 -0.57 -8.51 16 15 C 0.55 9.79 7.87 -10.98 -0.09 9.70 16 16 O -0.51 -11.34 16.19 5.56 0.09 -11.25 16 17 C -0.12 -2.22 5.16 36.01 0.19 -2.04 16 18 S -0.14 -3.55 18.55 -107.50 -1.99 -5.54 16 19 C -0.52 -14.81 10.04 30.94 0.31 -14.49 16 20 H 0.09 2.58 8.03 -52.49 -0.42 2.16 16 21 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 22 N -0.88 -26.26 13.97 55.49 0.78 -25.49 16 23 Si 0.86 21.67 27.74 -169.99 -4.71 16.95 16 24 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.23 -5.95 6.74 56.52 0.38 -5.56 16 27 C 0.11 1.22 5.76 -3.06 -0.02 1.20 16 28 H 0.07 0.42 8.13 -51.93 -0.42 0.00 16 29 H 0.06 0.30 8.14 -51.92 -0.42 -0.12 16 30 H 0.08 0.67 6.46 -51.93 -0.34 0.34 16 31 H 0.40 0.76 7.73 -40.82 -0.32 0.45 16 32 H 0.21 1.35 8.06 -52.49 -0.42 0.93 16 33 H 0.09 0.17 8.04 -51.93 -0.42 -0.25 16 34 H 0.10 0.45 8.04 -51.93 -0.42 0.04 16 35 H 0.09 0.68 7.48 -51.93 -0.39 0.29 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 38 H 0.10 1.68 7.85 -51.92 -0.41 1.28 16 39 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 40 H 0.08 0.98 7.82 -51.93 -0.41 0.57 16 41 H 0.08 1.09 6.47 -51.93 -0.34 0.76 16 LS Contribution 359.93 15.07 5.42 5.42 Total: -1.00 -38.33 359.93 -6.58 -44.92 By element: Atomic # 1 Polarization: 2.02 SS G_CDS: -6.30 Total: -4.28 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -0.55 Total: 1.05 kcal Atomic # 7 Polarization: -43.10 SS G_CDS: 1.38 Total: -41.72 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: 0.16 Total: -16.80 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.71 Total: 16.95 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -1.99 Total: -5.54 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -38.33 -6.58 -44.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722208358.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.406 kcal (2) G-P(sol) polarization free energy of solvation -38.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds