Wall clock time and date at job start Tue Mar 31 2020 22:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 110.78299 * 2 1 4 4 C 1.34768 * 119.99627 * 298.21461 * 3 2 1 5 5 O 1.21617 * 120.00541 * 359.97438 * 4 3 2 6 6 C 1.47241 * 119.99747 * 179.97438 * 4 3 2 7 7 C 1.37008 * 127.18791 * 179.68050 * 6 4 3 8 8 N 1.33326 * 106.36927 * 179.90397 * 7 6 4 9 9 N 1.28507 * 109.43843 * 0.37760 * 8 7 6 10 10 N 1.28713 * 110.64210 * 359.75763 * 9 8 7 11 11 H 0.97002 * 126.03975 * 179.97438 * 10 9 8 12 12 C 1.55165 * 110.71789 * 123.23827 * 2 1 3 13 13 C 1.54915 * 101.57980 * 153.86302 * 12 2 1 14 14 N 1.47425 * 104.83334 * 322.99105 * 13 12 2 15 15 C 1.34777 * 125.65136 * 204.16738 * 14 13 12 16 16 O 1.21281 * 120.00173 * 179.97438 * 15 14 13 17 17 C 1.50706 * 119.99667 * 359.95409 * 15 14 13 18 18 S 1.80995 * 109.46960 * 180.02562 * 17 15 14 19 19 C 1.76200 * 100.00030 * 179.97438 * 18 17 15 20 20 H 1.08001 * 119.99969 * 0.02562 * 19 18 17 21 21 C 1.38793 * 120.00079 * 180.02562 * 19 18 17 22 22 N 1.31634 * 120.00281 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 120.00168 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46879 * 90.00208 * 23 21 19 25 25 H 1.48506 * 109.47328 * 210.00270 * 23 21 19 26 26 H 1.48501 * 109.47207 * 330.00174 * 23 21 19 27 27 C 1.47022 * 108.70334 * 24.12789 * 14 13 12 28 28 H 1.08999 * 109.47239 * 181.78862 * 1 2 3 29 29 H 1.09007 * 109.46791 * 301.78847 * 1 2 3 30 30 H 1.08997 * 109.47298 * 61.78055 * 1 2 3 31 31 H 0.97000 * 119.99673 * 118.21257 * 3 2 1 32 32 H 1.07999 * 126.81115 * 0.02562 * 7 6 4 33 33 H 1.08995 * 111.00547 * 271.93634 * 12 2 1 34 34 H 1.09001 * 111.00003 * 35.79214 * 12 2 1 35 35 H 1.08997 * 110.36462 * 204.15099 * 13 12 2 36 36 H 1.08999 * 110.46102 * 81.87572 * 13 12 2 37 37 H 1.08997 * 109.46784 * 300.00107 * 17 15 14 38 38 H 1.09002 * 109.46871 * 60.00068 * 17 15 14 39 39 H 0.97000 * 120.00498 * 179.97438 * 22 21 19 40 40 H 1.08997 * 109.88723 * 239.52626 * 27 14 13 41 41 H 1.08998 * 109.88661 * 118.35607 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0498 1.3697 0.0000 4 6 1.7730 2.1954 -1.0285 5 8 1.0921 1.8035 -1.9568 6 6 2.2949 3.5722 -1.0282 7 6 2.1113 4.5277 -1.9929 8 7 2.7585 5.6150 -1.5728 9 7 3.3148 5.3708 -0.4404 10 7 3.0710 4.1637 -0.0661 11 1 3.3820 3.7462 0.7524 12 6 2.0789 -0.7955 1.2139 13 6 3.4632 -1.2499 0.6876 14 7 3.2445 -1.5508 -0.7390 15 6 3.9913 -2.3848 -1.4894 16 8 3.7178 -2.5581 -2.6582 17 6 5.1667 -3.1017 -0.8762 18 16 5.9612 -4.1387 -2.1288 19 6 7.2621 -4.8374 -1.1674 20 1 7.3653 -4.5730 -0.1253 21 6 8.1541 -5.7274 -1.7492 22 7 9.1256 -6.2498 -1.0308 23 14 7.9751 -6.1852 -3.5514 24 1 8.7619 -5.2392 -4.3828 25 1 8.4775 -7.5665 -3.7635 26 1 6.5438 -6.1139 -3.9405 27 6 2.0760 -0.7913 -1.2072 28 1 -0.3634 -1.0271 0.0321 29 1 -0.3633 0.5414 0.8736 30 1 -0.3634 0.4859 -0.9055 31 1 2.5932 1.6822 0.7403 32 1 1.5515 4.4217 -2.9104 33 1 2.1849 -0.1519 2.0871 34 1 1.4450 -1.6536 1.4375 35 1 3.7959 -2.1427 1.2170 36 1 4.1946 -0.4493 0.7985 37 1 5.8834 -2.3705 -0.5024 38 1 4.8216 -3.7264 -0.0523 39 1 9.7488 -6.8721 -1.4373 40 1 1.3129 -1.4758 -1.5775 41 1 2.3740 -0.1025 -1.9977 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001722208358.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:00 Heat of formation + Delta-G solvation = 3.967092 kcal Electronic energy + Delta-G solvation = -26648.875845 eV Core-core repulsion = 22691.350613 eV Total energy + Delta-G solvation = -3957.525232 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.47777 -41.83958 -40.45446 -38.67674 -35.73348 -34.70739 -34.67617 -33.17795 -32.03094 -31.03016 -30.62728 -27.92736 -27.15758 -25.82243 -24.40652 -24.02561 -22.51995 -21.18848 -20.84055 -20.32382 -19.62858 -18.22880 -17.81392 -17.75293 -17.50418 -17.14553 -16.90403 -16.35139 -15.93209 -15.80733 -15.70421 -15.35518 -15.05976 -14.92354 -14.62411 -14.32714 -13.79661 -13.59019 -13.39311 -13.35873 -13.33309 -13.25184 -13.03745 -12.71633 -12.50791 -12.42005 -12.39602 -11.99749 -11.89348 -11.88637 -11.22080 -11.19129 -11.09113 -10.73051 -10.55300 -10.39083 -9.78916 -9.03483 -8.53563 -6.24714 -0.26056 0.93469 1.13166 1.29325 1.35633 1.43174 1.47059 1.50658 1.73865 1.89129 2.00956 2.22981 2.66088 2.84897 3.13400 3.22737 3.41618 3.55946 3.71573 3.79648 3.86228 4.02711 4.13386 4.18517 4.27978 4.36728 4.47604 4.65036 4.67918 4.75680 4.78966 4.87732 4.95304 5.04991 5.21593 5.30052 5.34443 5.63249 5.69139 6.09518 6.20123 6.29932 6.85350 6.92092 7.01416 7.10939 8.58541 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.016230 B = 0.002491 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.791706 B =11236.125549 C =11833.169162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.174 3.826 3 N -0.696 5.696 4 C 0.602 3.398 5 O -0.537 6.537 6 C -0.062 4.062 7 C 0.025 3.975 8 N -0.299 5.299 9 N -0.057 5.057 10 N -0.346 5.346 11 H 0.469 0.531 12 C -0.115 4.115 13 C 0.080 3.920 14 N -0.614 5.614 15 C 0.543 3.457 16 O -0.567 6.567 17 C -0.098 4.098 18 S -0.183 6.183 19 C -0.524 4.524 20 H 0.066 0.934 21 C 0.048 3.952 22 N -0.915 5.915 23 Si 0.910 3.090 24 H -0.264 1.264 25 H -0.258 1.258 26 H -0.239 1.239 27 C 0.103 3.897 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.056 0.944 31 H 0.417 0.583 32 H 0.214 0.786 33 H 0.137 0.863 34 H 0.110 0.890 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.112 0.888 38 H 0.116 0.884 39 H 0.277 0.723 40 H 0.066 0.934 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.855 19.476 12.007 29.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.087 3.913 3 N -0.350 5.350 4 C 0.386 3.614 5 O -0.411 6.411 6 C -0.198 4.198 7 C -0.135 4.135 8 N -0.163 5.163 9 N -0.040 5.040 10 N -0.077 5.077 11 H 0.320 0.680 12 C -0.153 4.153 13 C -0.041 4.041 14 N -0.349 5.349 15 C 0.331 3.669 16 O -0.446 6.446 17 C -0.249 4.249 18 S 0.044 5.956 19 C -0.672 4.672 20 H 0.084 0.916 21 C -0.158 4.158 22 N -0.553 5.553 23 Si 0.733 3.267 24 H -0.189 1.189 25 H -0.182 1.182 26 H -0.163 1.163 27 C -0.021 4.021 28 H 0.099 0.901 29 H 0.107 0.893 30 H 0.075 0.925 31 H 0.255 0.745 32 H 0.231 0.769 33 H 0.155 0.845 34 H 0.128 0.872 35 H 0.112 0.888 36 H 0.108 0.892 37 H 0.130 0.870 38 H 0.134 0.866 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -18.888 20.121 9.869 29.309 hybrid contribution 0.875 -1.370 0.866 1.842 sum -18.013 18.751 10.735 28.130 Atomic orbital electron populations 1.22060 0.91143 1.04009 1.03733 1.21278 0.95228 0.79926 0.94847 1.45729 1.54202 1.12098 1.22967 1.16767 0.79675 0.82228 0.82764 1.90900 1.38953 1.75300 1.35992 1.22208 1.05717 0.97182 0.94646 1.24262 1.00229 0.87807 1.01246 1.75027 1.11290 1.25228 1.04768 1.78184 1.18184 0.98176 1.09421 1.45538 1.33341 1.09555 1.19290 0.67955 1.23230 0.94348 1.01365 0.96356 1.22848 0.99521 1.02914 0.78844 1.48412 1.29811 1.43806 1.12878 1.19790 0.82960 0.78632 0.85500 1.90705 1.71154 1.64528 1.18231 1.23182 0.97866 1.01670 1.02148 1.84862 1.35715 1.55926 1.19132 1.22406 1.14526 1.31267 0.99009 0.91559 1.25500 0.93614 0.94415 1.02245 1.70001 1.16382 1.30483 1.38411 0.85923 0.81365 0.79169 0.80274 1.18889 1.18228 1.16273 1.22360 0.87601 0.94339 0.97762 0.90129 0.89302 0.92539 0.74474 0.76937 0.84461 0.87155 0.88816 0.89229 0.87021 0.86551 0.91333 0.91537 0.93126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 8.41 71.98 0.61 -0.85 16 2 C 0.17 1.77 0.81 4.79 0.00 1.77 16 3 N -0.70 -5.04 5.14 -420.95 -2.17 -7.21 16 4 C 0.60 8.53 7.03 86.61 0.61 9.14 16 5 O -0.54 -11.99 13.88 -4.09 -0.06 -12.04 16 6 C -0.06 -0.80 7.17 40.41 0.29 -0.51 16 7 C 0.02 0.41 11.87 84.18 1.00 1.40 16 8 N -0.30 -5.93 12.35 -57.50 -0.71 -6.64 16 9 N -0.06 -0.93 13.35 37.02 0.49 -0.44 16 10 N -0.35 -2.93 6.97 -48.51 -0.34 -3.27 16 11 H 0.47 -0.56 8.32 -219.90 -1.83 -2.39 16 12 C -0.12 -0.48 6.09 31.99 0.19 -0.29 16 13 C 0.08 0.93 6.67 86.86 0.58 1.51 16 14 N -0.61 -14.50 3.33 -811.78 -2.70 -17.20 16 15 C 0.54 19.16 7.87 87.66 0.69 19.85 16 16 O -0.57 -25.66 16.19 -3.03 -0.05 -25.71 16 17 C -0.10 -3.61 5.16 71.24 0.37 -3.24 16 18 S -0.18 -9.24 18.55 -56.49 -1.05 -10.29 16 19 C -0.52 -29.99 10.04 67.95 0.68 -29.31 16 20 H 0.07 3.95 8.03 -2.91 -0.02 3.92 16 21 C 0.05 2.78 5.50 84.86 0.47 3.25 16 22 N -0.91 -54.92 13.97 21.65 0.30 -54.62 16 23 Si 0.91 44.91 27.74 68.60 1.90 46.81 16 24 H -0.26 -12.79 7.11 99.48 0.71 -12.09 16 25 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 26 H -0.24 -11.84 6.74 99.48 0.67 -11.17 16 27 C 0.10 2.24 5.76 86.73 0.50 2.74 16 28 H 0.08 0.70 8.13 -2.39 -0.02 0.68 16 29 H 0.09 0.45 8.14 -2.38 -0.02 0.43 16 30 H 0.06 0.87 6.46 -2.39 -0.02 0.86 16 31 H 0.42 -0.44 7.73 -92.71 -0.72 -1.16 16 32 H 0.21 2.89 8.06 -2.91 -0.02 2.86 16 33 H 0.14 -0.53 8.04 -2.39 -0.02 -0.55 16 34 H 0.11 0.40 8.04 -2.39 -0.02 0.38 16 35 H 0.09 1.06 7.48 -2.39 -0.02 1.04 16 36 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.11 3.74 8.14 -2.40 -0.02 3.72 16 38 H 0.12 3.83 7.85 -2.39 -0.02 3.81 16 39 H 0.28 15.41 8.31 -92.71 -0.77 14.64 16 40 H 0.07 1.63 7.82 -2.39 -0.02 1.62 16 41 H 0.05 1.42 6.47 -2.39 -0.02 1.40 16 Total: -1.00 -87.75 359.93 0.14 -87.61 By element: Atomic # 1 Polarization: -1.01 SS G_CDS: -1.48 Total: -2.49 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: 5.99 Total: 5.47 kcal Atomic # 7 Polarization: -84.25 SS G_CDS: -5.12 Total: -89.37 kcal Atomic # 8 Polarization: -37.65 SS G_CDS: -0.11 Total: -37.76 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.90 Total: 46.81 kcal Atomic # 16 Polarization: -9.24 SS G_CDS: -1.05 Total: -10.29 kcal Total: -87.75 0.14 -87.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722208358.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.581 kcal (2) G-P(sol) polarization free energy of solvation -87.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds