Wall clock time and date at job start Tue Mar 31 2020 22:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46496 * 110.88491 * 2 1 4 4 C 1.34767 * 120.00233 * 56.11851 * 3 2 1 5 5 O 1.21616 * 120.00110 * 359.97438 * 4 3 2 6 6 C 1.47237 * 120.00004 * 179.97438 * 4 3 2 7 7 C 1.37011 * 127.18616 * 179.97438 * 6 4 3 8 8 N 1.33325 * 106.36644 * 179.97438 * 7 6 4 9 9 N 1.28515 * 109.44143 * 0.02562 * 8 7 6 10 10 N 1.28714 * 110.63727 * 359.75577 * 9 8 7 11 11 H 0.96994 * 126.03423 * 180.27072 * 10 9 8 12 12 C 1.55160 * 111.00399 * 236.11672 * 2 1 3 13 13 C 1.54316 * 102.94268 * 206.42607 * 12 2 1 14 14 N 1.47026 * 107.27365 * 22.19228 * 13 12 2 15 15 C 1.34771 * 125.65100 * 180.79395 * 14 13 12 16 16 O 1.21280 * 119.99952 * 180.02562 * 15 14 13 17 17 C 1.50705 * 119.99988 * 0.02691 * 15 14 13 18 18 S 1.80993 * 109.46992 * 179.97438 * 17 15 14 19 19 C 1.76201 * 100.00132 * 179.97438 * 18 17 15 20 20 H 1.07999 * 119.99797 * 0.02562 * 19 18 17 21 21 C 1.38798 * 120.00331 * 179.97438 * 19 18 17 22 22 N 1.31633 * 120.00005 * 180.02562 * 21 19 18 23 23 Si 1.86794 * 119.99926 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47205 * 89.99834 * 23 21 19 25 25 H 1.48505 * 109.47119 * 209.99970 * 23 21 19 26 26 H 1.48501 * 109.47018 * 329.99852 * 23 21 19 27 27 C 1.47425 * 108.70074 * 1.05989 * 14 13 12 28 28 H 1.08997 * 109.47161 * 183.88027 * 1 2 3 29 29 H 1.08991 * 109.46994 * 303.88122 * 1 2 3 30 30 H 1.08999 * 109.47006 * 63.88310 * 1 2 3 31 31 H 0.97004 * 119.99324 * 236.11856 * 3 2 1 32 32 H 1.07995 * 126.81566 * 0.02562 * 7 6 4 33 33 H 1.08997 * 110.71793 * 88.05937 * 12 2 1 34 34 H 1.09002 * 110.71871 * 324.79283 * 12 2 1 35 35 H 1.09004 * 109.88447 * 262.78098 * 13 12 2 36 36 H 1.08996 * 110.01243 * 141.68527 * 13 12 2 37 37 H 1.08993 * 109.46871 * 299.99760 * 17 15 14 38 38 H 1.09000 * 109.46865 * 59.99842 * 17 15 14 39 39 H 0.96996 * 120.00095 * 180.02562 * 22 21 19 40 40 H 1.09001 * 110.36478 * 94.71036 * 27 14 13 41 41 H 1.08998 * 110.36859 * 217.03414 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0523 1.3687 0.0000 4 6 1.6847 2.2303 0.9689 5 8 0.9190 1.8717 1.8431 6 6 2.2101 3.6057 0.9692 7 6 1.9365 4.5965 1.8751 8 7 2.6286 5.6662 1.4824 9 7 3.2873 5.3818 0.4162 10 7 3.0785 4.1608 0.0661 11 1 3.4663 3.7132 -0.7020 12 6 2.0862 -0.8075 -1.2025 13 6 3.4674 -1.2740 -0.6965 14 7 3.4272 -1.2434 0.7729 15 6 4.4463 -1.5664 1.5935 16 8 4.2996 -1.5047 2.7959 17 6 5.7682 -2.0041 1.0171 18 16 6.9234 -2.3647 2.3630 19 6 8.3412 -2.8388 1.4305 20 1 8.3024 -2.8389 0.3512 21 6 9.5084 -3.2111 2.0829 22 7 10.5677 -3.5648 1.3862 23 14 9.5758 -3.2103 3.9496 24 1 9.1599 -4.5412 4.4606 25 1 10.9626 -2.9205 4.3948 26 1 8.6585 -2.1687 4.4776 27 6 2.0853 -0.8071 1.2000 28 1 -0.3633 -1.0253 0.0695 29 1 -0.3633 0.5728 0.8531 30 1 -0.3633 0.4524 -0.9227 31 1 2.6628 1.6548 -0.6975 32 1 1.2893 4.5249 2.7367 33 1 2.1922 -0.1693 -2.0797 34 1 1.4468 -1.6627 -1.4216 35 1 4.2427 -0.5994 -1.0601 36 1 3.6677 -2.2885 -1.0408 37 1 5.6224 -2.8997 0.4132 38 1 6.1743 -1.2076 0.3937 39 1 11.3832 -3.8254 1.8421 40 1 1.4519 -1.6709 1.4019 41 1 2.1560 -0.1727 2.0836 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001722208359.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:04 Heat of formation + Delta-G solvation = 34.830630 kcal Electronic energy + Delta-G solvation = -26894.313331 eV Core-core repulsion = 22938.126443 eV Total energy + Delta-G solvation = -3956.186889 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.78728 -41.03443 -39.37346 -37.66955 -34.85902 -33.93934 -32.49681 -32.43865 -31.28844 -30.04605 -29.64685 -26.38838 -25.63460 -25.11163 -23.64244 -23.28562 -21.86698 -20.35110 -20.01291 -19.35569 -17.90429 -17.21749 -16.88185 -16.81645 -16.68274 -16.03539 -15.39071 -15.10381 -15.01244 -14.72279 -14.64324 -14.28646 -14.09997 -13.85733 -13.13572 -13.06245 -12.83030 -12.76852 -12.68829 -12.59685 -12.08476 -11.95195 -11.81359 -11.72527 -11.40486 -11.31046 -11.20644 -11.04793 -10.67864 -10.44226 -10.00598 -9.91669 -9.79691 -9.59144 -9.05191 -8.69740 -8.55899 -6.98470 -6.34180 -4.06637 0.41453 1.86768 1.94119 2.31369 2.57980 2.59278 2.84805 3.11170 3.29834 3.47345 3.53391 3.70753 3.85245 4.06658 4.19749 4.28810 4.34603 4.51636 4.60953 4.68393 4.70805 4.87717 5.04624 5.05141 5.08332 5.18165 5.30875 5.33486 5.36072 5.48168 5.54914 5.66263 5.70931 5.80064 5.90357 5.94745 6.07853 6.18583 6.74105 7.43676 7.45761 7.81315 7.88750 8.33393 8.35312 9.12067 10.74963 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012548 B = 0.002957 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.946330 B = 9465.793380 C =10621.331755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.162 3.838 3 N -0.711 5.711 4 C 0.601 3.399 5 O -0.502 6.502 6 C -0.069 4.069 7 C 0.037 3.963 8 N -0.269 5.269 9 N -0.042 5.042 10 N -0.374 5.374 11 H 0.450 0.550 12 C -0.131 4.131 13 C 0.097 3.903 14 N -0.625 5.625 15 C 0.546 3.454 16 O -0.512 6.512 17 C -0.117 4.117 18 S -0.141 6.141 19 C -0.522 4.522 20 H 0.088 0.912 21 C 0.097 3.903 22 N -0.880 5.880 23 Si 0.856 3.144 24 H -0.266 1.266 25 H -0.273 1.273 26 H -0.235 1.235 27 C 0.103 3.897 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.062 0.938 31 H 0.396 0.604 32 H 0.206 0.794 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.271 0.729 40 H 0.079 0.921 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.007 10.632 -10.399 26.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.076 3.924 3 N -0.363 5.363 4 C 0.385 3.615 5 O -0.375 6.375 6 C -0.203 4.203 7 C -0.122 4.122 8 N -0.134 5.134 9 N -0.025 5.025 10 N -0.101 5.101 11 H 0.297 0.703 12 C -0.169 4.169 13 C -0.026 4.026 14 N -0.363 5.363 15 C 0.334 3.666 16 O -0.386 6.386 17 C -0.268 4.268 18 S 0.085 5.915 19 C -0.670 4.670 20 H 0.106 0.894 21 C -0.112 4.112 22 N -0.516 5.516 23 Si 0.681 3.319 24 H -0.191 1.191 25 H -0.198 1.198 26 H -0.159 1.159 27 C -0.021 4.021 28 H 0.092 0.908 29 H 0.106 0.894 30 H 0.081 0.919 31 H 0.231 0.769 32 H 0.222 0.778 33 H 0.108 0.892 34 H 0.118 0.882 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.081 0.919 40 H 0.097 0.903 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -21.839 11.708 -8.118 26.075 hybrid contribution 0.693 -1.395 -1.478 2.148 sum -21.146 10.313 -9.596 25.408 Atomic orbital electron populations 1.22086 0.91782 1.03739 1.03991 1.21508 0.94799 0.80085 0.96044 1.45781 1.49379 1.12109 1.29011 1.16698 0.80880 0.81940 0.81995 1.90857 1.34291 1.76383 1.35951 1.22368 1.02937 0.97732 0.97242 1.23965 1.00370 0.87566 1.00302 1.75040 1.08150 1.24811 1.05360 1.78261 1.18140 0.95877 1.10175 1.45597 1.31532 1.10263 1.22734 0.70323 1.23010 0.96417 1.00629 0.96839 1.22053 0.97290 1.02387 0.80910 1.48450 1.12268 1.69201 1.06363 1.20015 0.84051 0.76375 0.86152 1.90731 1.82154 1.51421 1.14290 1.23247 0.94962 1.04396 1.04146 1.84861 1.08496 1.88184 1.09932 1.22287 0.96538 1.52264 0.95876 0.89420 1.24703 0.94296 0.93214 0.99009 1.69932 1.02440 1.43032 1.36212 0.86745 0.79042 0.80919 0.85229 1.19131 1.19850 1.15940 1.22563 0.83549 0.98280 0.97671 0.90803 0.89434 0.91876 0.76944 0.77750 0.89192 0.88197 0.91234 0.90472 0.88555 0.88762 0.91878 0.90284 0.89190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.96 8.59 37.16 0.32 -0.64 16 2 C 0.16 1.09 0.82 -129.67 -0.11 0.99 16 3 N -0.71 -4.43 5.18 -46.74 -0.24 -4.67 16 4 C 0.60 5.31 7.18 -12.61 -0.09 5.22 16 5 O -0.50 -5.90 13.75 5.26 0.07 -5.83 16 6 C -0.07 -0.57 7.17 -82.33 -0.59 -1.16 16 7 C 0.04 0.35 11.87 -17.35 -0.21 0.15 16 8 N -0.27 -3.02 12.35 30.47 0.38 -2.64 16 9 N -0.04 -0.42 13.35 60.35 0.81 0.38 16 10 N -0.37 -2.53 6.97 33.31 0.23 -2.30 16 11 H 0.45 1.21 8.32 -190.34 -1.58 -0.37 16 12 C -0.13 -0.59 5.97 -24.90 -0.15 -0.74 16 13 C 0.10 0.75 6.48 -3.07 -0.02 0.73 16 14 N -0.63 -7.75 3.33 -170.52 -0.57 -8.31 16 15 C 0.55 9.69 7.87 -10.99 -0.09 9.60 16 16 O -0.51 -11.29 16.12 5.56 0.09 -11.20 16 17 C -0.12 -2.21 5.35 36.01 0.19 -2.02 16 18 S -0.14 -3.55 18.55 -107.50 -1.99 -5.55 16 19 C -0.52 -14.83 10.04 30.94 0.31 -14.51 16 20 H 0.09 2.58 8.03 -52.49 -0.42 2.16 16 21 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 22 N -0.88 -26.26 13.97 55.49 0.78 -25.48 16 23 Si 0.86 21.70 27.74 -169.99 -4.72 16.98 16 24 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16 26 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 27 C 0.10 1.13 5.84 -2.53 -0.01 1.12 16 28 H 0.07 0.38 8.07 -51.93 -0.42 -0.04 16 29 H 0.09 0.73 5.91 -51.93 -0.31 0.43 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.40 1.31 7.77 -40.82 -0.32 0.99 16 32 H 0.21 1.52 8.06 -52.49 -0.42 1.10 16 33 H 0.09 0.19 8.09 -51.93 -0.42 -0.23 16 34 H 0.10 0.35 8.04 -51.93 -0.42 -0.06 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.10 1.69 8.14 -51.92 -0.42 1.27 16 38 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 39 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 40 H 0.08 0.82 7.98 -51.93 -0.41 0.41 16 41 H 0.09 1.28 6.76 -51.93 -0.35 0.93 16 LS Contribution 360.96 15.07 5.44 5.44 Total: -1.00 -38.20 360.96 -6.61 -44.81 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: -6.34 Total: -3.07 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -0.54 Total: 1.44 kcal Atomic # 7 Polarization: -44.40 SS G_CDS: 1.38 Total: -43.02 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: 0.16 Total: -17.03 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.72 Total: 16.98 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -1.99 Total: -5.55 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -38.20 -6.61 -44.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722208359.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.640 kcal (2) G-P(sol) polarization free energy of solvation -38.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds