Wall clock time and date at job start Tue Mar 31 2020 22:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46496 * 110.88491 * 2 1 4 4 C 1.34767 * 120.00233 * 56.11851 * 3 2 1 5 5 O 1.21616 * 120.00110 * 359.97438 * 4 3 2 6 6 C 1.47237 * 120.00004 * 179.97438 * 4 3 2 7 7 C 1.37011 * 127.18616 * 179.97438 * 6 4 3 8 8 N 1.33325 * 106.36644 * 179.97438 * 7 6 4 9 9 N 1.28515 * 109.44143 * 0.02562 * 8 7 6 10 10 N 1.28714 * 110.63727 * 359.75577 * 9 8 7 11 11 H 0.96994 * 126.03423 * 180.27072 * 10 9 8 12 12 C 1.55160 * 111.00399 * 236.11672 * 2 1 3 13 13 C 1.54316 * 102.94268 * 206.42607 * 12 2 1 14 14 N 1.47026 * 107.27365 * 22.19228 * 13 12 2 15 15 C 1.34771 * 125.65100 * 180.79395 * 14 13 12 16 16 O 1.21280 * 119.99952 * 180.02562 * 15 14 13 17 17 C 1.50705 * 119.99988 * 0.02691 * 15 14 13 18 18 S 1.80993 * 109.46992 * 179.97438 * 17 15 14 19 19 C 1.76201 * 100.00132 * 179.97438 * 18 17 15 20 20 H 1.07999 * 119.99797 * 0.02562 * 19 18 17 21 21 C 1.38798 * 120.00331 * 179.97438 * 19 18 17 22 22 N 1.31633 * 120.00005 * 180.02562 * 21 19 18 23 23 Si 1.86794 * 119.99926 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47205 * 89.99834 * 23 21 19 25 25 H 1.48505 * 109.47119 * 209.99970 * 23 21 19 26 26 H 1.48501 * 109.47018 * 329.99852 * 23 21 19 27 27 C 1.47425 * 108.70074 * 1.05989 * 14 13 12 28 28 H 1.08997 * 109.47161 * 183.88027 * 1 2 3 29 29 H 1.08991 * 109.46994 * 303.88122 * 1 2 3 30 30 H 1.08999 * 109.47006 * 63.88310 * 1 2 3 31 31 H 0.97004 * 119.99324 * 236.11856 * 3 2 1 32 32 H 1.07995 * 126.81566 * 0.02562 * 7 6 4 33 33 H 1.08997 * 110.71793 * 88.05937 * 12 2 1 34 34 H 1.09002 * 110.71871 * 324.79283 * 12 2 1 35 35 H 1.09004 * 109.88447 * 262.78098 * 13 12 2 36 36 H 1.08996 * 110.01243 * 141.68527 * 13 12 2 37 37 H 1.08993 * 109.46871 * 299.99760 * 17 15 14 38 38 H 1.09000 * 109.46865 * 59.99842 * 17 15 14 39 39 H 0.96996 * 120.00095 * 180.02562 * 22 21 19 40 40 H 1.09001 * 110.36478 * 94.71036 * 27 14 13 41 41 H 1.08998 * 110.36859 * 217.03414 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0523 1.3687 0.0000 4 6 1.6847 2.2303 0.9689 5 8 0.9190 1.8717 1.8431 6 6 2.2101 3.6057 0.9692 7 6 1.9365 4.5965 1.8751 8 7 2.6286 5.6662 1.4824 9 7 3.2873 5.3818 0.4162 10 7 3.0785 4.1608 0.0661 11 1 3.4663 3.7132 -0.7020 12 6 2.0862 -0.8075 -1.2025 13 6 3.4674 -1.2740 -0.6965 14 7 3.4272 -1.2434 0.7729 15 6 4.4463 -1.5664 1.5935 16 8 4.2996 -1.5047 2.7959 17 6 5.7682 -2.0041 1.0171 18 16 6.9234 -2.3647 2.3630 19 6 8.3412 -2.8388 1.4305 20 1 8.3024 -2.8389 0.3512 21 6 9.5084 -3.2111 2.0829 22 7 10.5677 -3.5648 1.3862 23 14 9.5758 -3.2103 3.9496 24 1 9.1599 -4.5412 4.4606 25 1 10.9626 -2.9205 4.3948 26 1 8.6585 -2.1687 4.4776 27 6 2.0853 -0.8071 1.2000 28 1 -0.3633 -1.0253 0.0695 29 1 -0.3633 0.5728 0.8531 30 1 -0.3633 0.4524 -0.9227 31 1 2.6628 1.6548 -0.6975 32 1 1.2893 4.5249 2.7367 33 1 2.1922 -0.1693 -2.0797 34 1 1.4468 -1.6627 -1.4216 35 1 4.2427 -0.5994 -1.0601 36 1 3.6677 -2.2885 -1.0408 37 1 5.6224 -2.8997 0.4132 38 1 6.1743 -1.2076 0.3937 39 1 11.3832 -3.8254 1.8421 40 1 1.4519 -1.6709 1.4019 41 1 2.1560 -0.1727 2.0836 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001722208359.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:03 Heat of formation + Delta-G solvation = 3.524786 kcal Electronic energy + Delta-G solvation = -26895.670855 eV Core-core repulsion = 22938.126443 eV Total energy + Delta-G solvation = -3957.544412 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.48754 -41.80923 -40.43969 -38.67126 -35.68583 -34.71375 -34.68165 -33.20563 -32.06610 -31.01037 -30.59789 -27.93430 -27.13743 -25.84684 -24.39959 -23.99810 -22.52765 -21.09615 -20.89349 -20.33114 -19.61011 -18.24960 -17.83652 -17.64893 -17.51128 -17.15094 -17.02615 -16.32275 -15.92161 -15.82438 -15.67015 -15.37570 -15.12576 -14.93416 -14.62578 -14.10180 -13.90861 -13.51454 -13.42759 -13.40900 -13.35593 -13.19380 -13.04716 -12.71835 -12.51789 -12.44794 -12.38320 -11.94694 -11.90499 -11.89895 -11.19989 -11.13873 -11.08504 -10.73225 -10.56163 -10.42363 -9.72194 -9.04489 -8.54565 -6.25702 -0.27031 0.93168 1.12081 1.28275 1.35135 1.42567 1.47300 1.49961 1.74544 1.89709 2.00387 2.21983 2.65278 2.83996 3.13073 3.22216 3.46253 3.54967 3.72372 3.83483 3.85326 4.01721 4.11429 4.26221 4.28475 4.36366 4.43602 4.67393 4.73265 4.78978 4.82979 4.86687 4.96704 5.04096 5.24325 5.34961 5.38884 5.60391 5.68183 6.08506 6.20008 6.31120 6.84330 6.91209 7.01949 7.09453 8.57614 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012548 B = 0.002957 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.946330 B = 9465.793380 C =10621.331755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.169 3.831 3 N -0.697 5.697 4 C 0.602 3.398 5 O -0.535 6.535 6 C -0.064 4.064 7 C 0.025 3.975 8 N -0.298 5.298 9 N -0.058 5.058 10 N -0.348 5.348 11 H 0.468 0.532 12 C -0.113 4.113 13 C 0.081 3.919 14 N -0.612 5.612 15 C 0.544 3.456 16 O -0.568 6.568 17 C -0.098 4.098 18 S -0.184 6.184 19 C -0.525 4.525 20 H 0.066 0.934 21 C 0.049 3.951 22 N -0.915 5.915 23 Si 0.910 3.090 24 H -0.262 1.262 25 H -0.258 1.258 26 H -0.241 1.241 27 C 0.097 3.903 28 H 0.085 0.915 29 H 0.060 0.940 30 H 0.085 0.915 31 H 0.414 0.586 32 H 0.216 0.784 33 H 0.129 0.871 34 H 0.120 0.880 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.277 0.723 40 H 0.084 0.916 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.410 10.593 -12.731 28.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.082 3.918 3 N -0.350 5.350 4 C 0.386 3.614 5 O -0.410 6.410 6 C -0.200 4.200 7 C -0.135 4.135 8 N -0.162 5.162 9 N -0.041 5.041 10 N -0.079 5.079 11 H 0.319 0.681 12 C -0.150 4.150 13 C -0.041 4.041 14 N -0.347 5.347 15 C 0.331 3.669 16 O -0.447 6.447 17 C -0.249 4.249 18 S 0.043 5.957 19 C -0.673 4.673 20 H 0.084 0.916 21 C -0.157 4.157 22 N -0.553 5.553 23 Si 0.732 3.268 24 H -0.187 1.187 25 H -0.183 1.183 26 H -0.165 1.165 27 C -0.027 4.027 28 H 0.104 0.896 29 H 0.079 0.921 30 H 0.104 0.896 31 H 0.251 0.749 32 H 0.232 0.768 33 H 0.147 0.853 34 H 0.138 0.862 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.132 0.868 38 H 0.131 0.869 39 H 0.087 0.913 40 H 0.102 0.898 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -23.237 11.680 -10.562 28.070 hybrid contribution 1.005 -1.396 -0.898 1.940 sum -22.231 10.284 -11.460 27.043 Atomic orbital electron populations 1.22050 0.90773 1.04331 1.03970 1.21510 0.95362 0.79720 0.95167 1.45690 1.49080 1.11581 1.28635 1.16746 0.80510 0.82144 0.82032 1.90858 1.35831 1.76920 1.37349 1.22292 1.02949 0.97464 0.97264 1.24270 1.00580 0.87601 1.01060 1.75014 1.09150 1.25903 1.06178 1.78187 1.18565 0.97020 1.10294 1.45542 1.30339 1.09367 1.22639 0.68122 1.23075 0.94072 1.01374 0.96494 1.22533 1.00208 1.03781 0.77556 1.48369 1.11414 1.66600 1.08305 1.19748 0.84663 0.76639 0.85803 1.90709 1.83105 1.54304 1.16568 1.23178 0.94133 1.05848 1.01716 1.84873 1.09114 1.88350 1.13365 1.22408 0.97920 1.51743 0.95196 0.91578 1.25489 0.94155 0.93063 1.02972 1.69999 1.03158 1.44148 1.37947 0.85931 0.79527 0.80831 0.80494 1.18691 1.18256 1.16477 1.22731 0.82862 0.98633 0.98470 0.89598 0.92069 0.89609 0.74892 0.76761 0.85318 0.86210 0.89617 0.89527 0.86847 0.86905 0.91320 0.89764 0.92926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 8.59 71.99 0.62 -0.76 16 2 C 0.17 1.73 0.82 5.00 0.00 1.74 16 3 N -0.70 -6.65 5.18 -420.05 -2.17 -8.82 16 4 C 0.60 9.86 7.18 86.61 0.62 10.48 16 5 O -0.53 -12.54 13.75 -4.08 -0.06 -12.59 16 6 C -0.06 -1.01 7.17 40.41 0.29 -0.72 16 7 C 0.02 0.47 11.87 84.18 1.00 1.47 16 8 N -0.30 -6.66 12.35 -57.50 -0.71 -7.37 16 9 N -0.06 -1.12 13.35 37.02 0.49 -0.63 16 10 N -0.35 -4.11 6.97 -48.52 -0.34 -4.45 16 11 H 0.47 1.23 8.32 -219.91 -1.83 -0.60 16 12 C -0.11 -0.40 5.97 31.78 0.19 -0.21 16 13 C 0.08 0.91 6.48 86.73 0.56 1.47 16 14 N -0.61 -13.92 3.33 -811.80 -2.70 -16.62 16 15 C 0.54 18.87 7.87 87.66 0.69 19.56 16 16 O -0.57 -25.49 16.12 -3.03 -0.05 -25.54 16 17 C -0.10 -3.59 5.35 71.24 0.38 -3.20 16 18 S -0.18 -9.26 18.55 -56.49 -1.05 -10.31 16 19 C -0.53 -30.02 10.04 67.95 0.68 -29.34 16 20 H 0.07 3.94 8.03 -2.91 -0.02 3.91 16 21 C 0.05 2.84 5.50 84.86 0.47 3.31 16 22 N -0.91 -54.90 13.97 21.65 0.30 -54.60 16 23 Si 0.91 44.96 27.74 68.60 1.90 46.87 16 24 H -0.26 -12.66 7.11 99.48 0.71 -11.95 16 25 H -0.26 -11.96 7.11 99.48 0.71 -11.26 16 26 H -0.24 -12.02 6.74 99.48 0.67 -11.35 16 27 C 0.10 1.98 5.84 86.86 0.51 2.49 16 28 H 0.09 0.58 8.07 -2.39 -0.02 0.56 16 29 H 0.06 0.95 5.91 -2.39 -0.01 0.93 16 30 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.41 1.01 7.77 -92.71 -0.72 0.29 16 32 H 0.22 3.30 8.06 -2.91 -0.02 3.28 16 33 H 0.13 -0.38 8.09 -2.39 -0.02 -0.40 16 34 H 0.12 0.11 8.04 -2.39 -0.02 0.09 16 35 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 36 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.11 3.76 8.14 -2.40 -0.02 3.74 16 38 H 0.11 3.70 8.14 -2.40 -0.02 3.68 16 39 H 0.28 15.42 8.31 -92.71 -0.77 14.64 16 40 H 0.08 1.65 7.98 -2.39 -0.02 1.63 16 41 H 0.05 1.52 6.76 -2.39 -0.02 1.50 16 Total: -1.00 -87.17 360.96 0.15 -87.03 By element: Atomic # 1 Polarization: 2.24 SS G_CDS: -1.49 Total: 0.75 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: 6.01 Total: 6.29 kcal Atomic # 7 Polarization: -87.36 SS G_CDS: -5.13 Total: -92.49 kcal Atomic # 8 Polarization: -38.03 SS G_CDS: -0.10 Total: -38.13 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.90 Total: 46.87 kcal Atomic # 16 Polarization: -9.26 SS G_CDS: -1.05 Total: -10.31 kcal Total: -87.17 0.15 -87.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722208359.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.552 kcal (2) G-P(sol) polarization free energy of solvation -87.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds