Wall clock time and date at job start Tue Mar 31 2020 23:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 110.32446 * 2 1 4 4 C 1.54914 * 110.46123 * 237.70119 * 2 1 3 5 5 C 1.55405 * 101.66697 * 204.18716 * 4 2 1 6 6 H 1.09000 * 110.69068 * 277.04987 * 5 4 2 7 7 N 1.46893 * 110.85117 * 153.69868 * 5 4 2 8 8 C 1.46900 * 110.99631 * 160.08500 * 7 5 4 9 9 C 1.50706 * 109.46900 * 180.02562 * 8 7 5 10 10 O 1.21292 * 119.99996 * 0.02562 * 9 8 7 11 11 N 1.34775 * 120.00256 * 179.97438 * 9 8 7 12 12 C 1.37094 * 120.00206 * 179.97438 * 11 9 8 13 13 H 1.08000 * 120.00437 * 0.02562 * 12 11 9 14 14 C 1.38952 * 119.99952 * 180.02562 * 12 11 9 15 15 N 1.31411 * 120.00055 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00081 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46577 * 60.00101 * 16 14 12 18 18 H 1.48505 * 109.46984 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47156 * 300.00057 * 16 14 12 20 20 C 1.54325 * 102.82616 * 35.33729 * 5 4 2 21 21 N 1.47018 * 107.40412 * 337.97548 * 20 5 4 22 22 C 1.34775 * 125.64993 * 178.90064 * 21 20 5 23 23 O 1.21568 * 120.00417 * 179.97438 * 22 21 20 24 24 C 1.47753 * 119.99840 * 359.97188 * 22 21 20 25 25 C 1.39352 * 124.11650 * 179.72578 * 24 22 21 26 26 N 1.30093 * 112.14401 * 179.82456 * 25 24 22 27 27 S 1.55918 * 108.75541 * 0.42391 * 26 25 24 28 28 N 1.31491 * 124.11571 * 0.03124 * 24 22 21 29 29 H 1.09005 * 109.47155 * 299.21526 * 1 2 3 30 30 H 1.09001 * 109.47501 * 59.21692 * 1 2 3 31 31 H 1.09003 * 109.47074 * 179.21719 * 1 2 3 32 32 H 1.09000 * 111.00339 * 322.18146 * 4 2 1 33 33 H 1.09001 * 111.00161 * 86.02740 * 4 2 1 34 34 H 1.00907 * 111.00123 * 36.13566 * 7 5 4 35 35 H 1.08997 * 109.47405 * 299.99781 * 8 7 5 36 36 H 1.08992 * 109.47013 * 60.00433 * 8 7 5 37 37 H 0.97004 * 119.99666 * 0.02562 * 11 9 8 38 38 H 0.97003 * 120.00439 * 179.97438 * 15 14 12 39 39 H 1.09002 * 109.88192 * 218.47989 * 20 5 4 40 40 H 1.09000 * 109.88128 * 97.46841 * 20 5 4 41 41 H 1.08001 * 123.92793 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0222 0.0000 4 6 2.0715 -0.7755 -1.2268 5 6 3.4821 -1.2006 -0.7323 6 1 4.1989 -0.3913 -0.8711 7 7 3.9318 -2.4188 -1.4191 8 6 5.3909 -2.5645 -1.3309 9 6 5.8142 -3.8220 -2.0455 10 8 4.9823 -4.5271 -2.5765 11 7 7.1172 -4.1627 -2.0956 12 6 7.5022 -5.3069 -2.7453 13 1 6.7614 -5.9351 -3.2174 14 6 8.8456 -5.6583 -2.7964 15 7 9.7470 -4.8941 -2.2215 16 14 9.3703 -7.2170 -3.6822 17 1 8.9662 -7.1352 -5.1089 18 1 10.8453 -7.3640 -3.5936 19 1 8.7164 -8.3902 -3.0490 20 6 3.2509 -1.4739 0.7689 21 7 2.0431 -0.7372 1.1690 22 6 1.4961 -0.7355 2.4008 23 8 0.4918 -0.0861 2.6190 24 6 2.1170 -1.5229 3.4859 25 6 1.6279 -1.5784 4.7896 26 7 2.3519 -2.3439 5.5527 27 16 3.5307 -2.9204 4.7107 28 7 3.2015 -2.2520 3.3405 29 1 -0.3634 0.5016 0.8970 30 1 -0.3634 0.5259 -0.8829 31 1 -0.3633 -1.0276 -0.0140 32 1 1.4549 -1.6487 -1.4404 33 1 2.1420 -0.1262 -2.0995 34 1 3.6252 -2.4261 -2.3804 35 1 5.8709 -1.7036 -1.7961 36 1 5.6874 -2.6240 -0.2837 37 1 7.7826 -3.5986 -1.6712 38 1 10.6848 -5.1396 -2.2568 39 1 4.1069 -1.1235 1.3456 40 1 3.1053 -2.5415 0.9332 41 1 0.7483 -1.0501 5.1265 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725576373.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:19 Heat of formation + Delta-G solvation = 6.201306 kcal Electronic energy + Delta-G solvation = -26655.287679 eV Core-core repulsion = 22697.859330 eV Total energy + Delta-G solvation = -3957.428349 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.45408 -39.95923 -38.41275 -37.64785 -34.88129 -34.04635 -33.80287 -31.87363 -31.26887 -30.07714 -27.74571 -26.37246 -25.90081 -24.27186 -23.64501 -21.58526 -20.93153 -19.62733 -19.55399 -19.16313 -17.90992 -17.18456 -17.08820 -16.29881 -16.17906 -15.66822 -15.25516 -14.96405 -14.79086 -14.49254 -14.16856 -13.83493 -13.80331 -13.54301 -13.27587 -12.70966 -12.48023 -12.39211 -12.29826 -12.08571 -11.68398 -11.67842 -11.56646 -11.47203 -11.45257 -11.18268 -11.05507 -10.93739 -10.87072 -10.46281 -10.23737 -10.02135 -9.52641 -9.50779 -8.83040 -8.52331 -8.17900 -7.99117 -6.44218 -3.85165 0.17775 1.13947 1.26636 1.35326 2.62789 2.85904 3.18253 3.24233 3.28509 3.86950 3.91403 4.10017 4.25659 4.30325 4.40554 4.57222 4.84470 4.86842 5.03488 5.05060 5.17093 5.20250 5.20982 5.29559 5.48195 5.56611 5.66432 5.72640 5.80192 5.87553 5.94304 5.99522 6.02761 6.16677 6.23896 6.33859 7.11577 7.20821 7.52600 7.55143 7.79281 8.03210 8.58270 9.15155 9.51272 10.02569 10.73365 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012722 B = 0.002696 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.391206 B =10384.693764 C =12181.103510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.138 3.862 3 H 0.080 0.920 4 C -0.132 4.132 5 C 0.072 3.928 6 H 0.060 0.940 7 N -0.656 5.656 8 C 0.049 3.951 9 C 0.440 3.560 10 O -0.583 6.583 11 N -0.563 5.563 12 C -0.300 4.300 13 H 0.102 0.898 14 C 0.023 3.977 15 N -0.902 5.902 16 Si 0.930 3.070 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.273 1.273 20 C 0.117 3.883 21 N -0.592 5.592 22 C 0.621 3.379 23 O -0.527 6.527 24 C 0.010 3.990 25 C 0.088 3.912 26 N -0.582 5.582 27 S 0.723 5.277 28 N -0.534 5.534 29 H 0.087 0.913 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.355 0.645 35 H 0.045 0.955 36 H 0.087 0.913 37 H 0.392 0.608 38 H 0.272 0.728 39 H 0.071 0.929 40 H 0.093 0.907 41 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.620 11.609 11.345 20.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.036 3.964 3 H 0.098 0.902 4 C -0.170 4.170 5 C -0.039 4.039 6 H 0.078 0.922 7 N -0.290 5.290 8 C -0.083 4.083 9 C 0.226 3.774 10 O -0.467 6.467 11 N -0.199 5.199 12 C -0.430 4.430 13 H 0.120 0.880 14 C -0.178 4.178 15 N -0.543 5.543 16 Si 0.757 3.243 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.199 1.199 20 C -0.007 4.007 21 N -0.325 5.325 22 C 0.404 3.596 23 O -0.404 6.404 24 C -0.165 4.165 25 C -0.105 4.105 26 N -0.422 5.422 27 S 0.765 5.235 28 N -0.384 5.384 29 H 0.106 0.894 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.176 0.824 35 H 0.063 0.937 36 H 0.105 0.895 37 H 0.225 0.775 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.111 0.889 41 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -12.081 9.731 12.291 19.792 hybrid contribution -0.059 1.280 -1.193 1.751 sum -12.140 11.010 11.098 19.793 Atomic orbital electron populations 1.22192 0.93430 1.03033 1.03710 1.21953 0.95586 0.95349 0.83546 0.90182 1.23124 0.95995 1.01031 0.96832 1.22595 0.95845 0.91716 0.93759 0.92195 1.60008 1.11485 1.35552 1.21938 1.21749 0.88121 0.97022 1.01422 1.19769 0.83439 0.88226 0.85985 1.90528 1.51278 1.54455 1.50486 1.41851 1.05745 1.23338 1.48978 1.19653 0.92501 1.00334 1.30507 0.87970 1.25257 0.95501 0.99337 0.97753 1.69601 1.02086 1.38441 1.44171 0.85924 0.77213 0.81364 0.79762 1.19917 1.20969 1.19854 1.22206 0.86002 0.98268 0.94182 1.48260 1.28238 1.47534 1.08465 1.16298 0.82854 0.80408 0.80025 1.90764 1.24454 1.43721 1.81463 1.22455 0.94487 1.02544 0.96976 1.23730 1.01460 0.97199 0.88157 1.72249 1.13236 1.17831 1.38931 1.79320 1.22279 1.35865 0.86046 1.72734 1.18672 1.14930 1.32075 0.89419 0.91789 0.92370 0.89079 0.89579 0.82382 0.93672 0.89520 0.77460 0.91796 0.91029 0.88929 0.77094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.59 8.71 37.16 0.32 -1.27 16 2 C 0.14 1.36 3.77 -66.42 -0.25 1.11 16 3 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 4 C -0.13 -1.25 5.96 -24.44 -0.15 -1.40 16 5 C 0.07 0.82 3.25 -65.75 -0.21 0.61 16 6 H 0.06 0.63 7.90 -51.93 -0.41 0.22 16 7 N -0.66 -9.76 5.92 -105.92 -0.63 -10.39 16 8 C 0.05 0.82 6.02 -4.97 -0.03 0.79 16 9 C 0.44 10.04 7.82 -10.98 -0.09 9.96 16 10 O -0.58 -15.41 15.78 5.55 0.09 -15.33 16 11 N -0.56 -13.90 5.29 -10.96 -0.06 -13.96 16 12 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16 13 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 14 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 15 N -0.90 -24.12 13.05 55.50 0.72 -23.40 16 16 Si 0.93 20.76 29.55 -169.99 -5.02 15.73 16 17 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 18 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 19 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 20 C 0.12 1.40 5.17 -3.07 -0.02 1.38 16 21 N -0.59 -6.84 3.24 -164.18 -0.53 -7.37 16 22 C 0.62 7.63 7.63 -12.37 -0.09 7.54 16 23 O -0.53 -7.10 14.45 5.31 0.08 -7.02 16 24 C 0.01 0.11 6.71 -83.71 -0.56 -0.45 16 25 C 0.09 0.87 11.22 -17.87 -0.20 0.67 16 26 N -0.58 -5.87 11.41 19.42 0.22 -5.64 16 27 S 0.72 6.47 23.69 -107.50 -2.55 3.92 16 28 N -0.53 -6.00 8.64 23.18 0.20 -5.80 16 29 H 0.09 0.98 5.88 -51.93 -0.31 0.67 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.09 0.96 8.06 -51.93 -0.42 0.54 16 33 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.36 5.40 8.21 -39.29 -0.32 5.08 16 35 H 0.05 0.67 8.09 -51.93 -0.42 0.25 16 36 H 0.09 1.34 8.13 -51.93 -0.42 0.92 16 37 H 0.39 9.24 7.90 -40.82 -0.32 8.92 16 38 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 39 H 0.07 0.85 7.69 -51.93 -0.40 0.45 16 40 H 0.09 1.31 7.45 -51.93 -0.39 0.92 16 41 H 0.21 1.62 8.06 -52.49 -0.42 1.19 16 LS Contribution 359.19 15.07 5.41 5.41 Total: -1.00 -32.21 359.19 -8.61 -40.82 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -5.03 Total: 11.96 kcal Atomic # 6 Polarization: 12.58 SS G_CDS: -1.51 Total: 11.06 kcal Atomic # 7 Polarization: -66.48 SS G_CDS: -0.07 Total: -66.55 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: 0.16 Total: -22.35 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: 6.47 SS G_CDS: -2.55 Total: 3.92 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.21 -8.61 -40.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725576373.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.019 kcal (2) G-P(sol) polarization free energy of solvation -32.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds