Wall clock time and date at job start Tue Mar 31 2020 23:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 110.32446 * 2 1 4 4 C 1.54914 * 110.46123 * 237.70119 * 2 1 3 5 5 C 1.55405 * 101.66697 * 204.18716 * 4 2 1 6 6 H 1.09000 * 110.69068 * 277.04987 * 5 4 2 7 7 N 1.46893 * 110.85117 * 153.69868 * 5 4 2 8 8 C 1.46900 * 110.99631 * 160.08500 * 7 5 4 9 9 C 1.50706 * 109.46900 * 180.02562 * 8 7 5 10 10 O 1.21292 * 119.99996 * 0.02562 * 9 8 7 11 11 N 1.34775 * 120.00256 * 179.97438 * 9 8 7 12 12 C 1.37094 * 120.00206 * 179.97438 * 11 9 8 13 13 H 1.08000 * 120.00437 * 0.02562 * 12 11 9 14 14 C 1.38952 * 119.99952 * 180.02562 * 12 11 9 15 15 N 1.31411 * 120.00055 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00081 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46577 * 60.00101 * 16 14 12 18 18 H 1.48505 * 109.46984 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47156 * 300.00057 * 16 14 12 20 20 C 1.54325 * 102.82616 * 35.33729 * 5 4 2 21 21 N 1.47018 * 107.40412 * 337.97548 * 20 5 4 22 22 C 1.34775 * 125.64993 * 178.90064 * 21 20 5 23 23 O 1.21568 * 120.00417 * 179.97438 * 22 21 20 24 24 C 1.47753 * 119.99840 * 359.97188 * 22 21 20 25 25 C 1.39352 * 124.11650 * 179.72578 * 24 22 21 26 26 N 1.30093 * 112.14401 * 179.82456 * 25 24 22 27 27 S 1.55918 * 108.75541 * 0.42391 * 26 25 24 28 28 N 1.31491 * 124.11571 * 0.03124 * 24 22 21 29 29 H 1.09005 * 109.47155 * 299.21526 * 1 2 3 30 30 H 1.09001 * 109.47501 * 59.21692 * 1 2 3 31 31 H 1.09003 * 109.47074 * 179.21719 * 1 2 3 32 32 H 1.09000 * 111.00339 * 322.18146 * 4 2 1 33 33 H 1.09001 * 111.00161 * 86.02740 * 4 2 1 34 34 H 1.00907 * 111.00123 * 36.13566 * 7 5 4 35 35 H 1.08997 * 109.47405 * 299.99781 * 8 7 5 36 36 H 1.08992 * 109.47013 * 60.00433 * 8 7 5 37 37 H 0.97004 * 119.99666 * 0.02562 * 11 9 8 38 38 H 0.97003 * 120.00439 * 179.97438 * 15 14 12 39 39 H 1.09002 * 109.88192 * 218.47989 * 20 5 4 40 40 H 1.09000 * 109.88128 * 97.46841 * 20 5 4 41 41 H 1.08001 * 123.92793 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0222 0.0000 4 6 2.0715 -0.7755 -1.2268 5 6 3.4821 -1.2006 -0.7323 6 1 4.1989 -0.3913 -0.8711 7 7 3.9318 -2.4188 -1.4191 8 6 5.3909 -2.5645 -1.3309 9 6 5.8142 -3.8220 -2.0455 10 8 4.9823 -4.5271 -2.5765 11 7 7.1172 -4.1627 -2.0956 12 6 7.5022 -5.3069 -2.7453 13 1 6.7614 -5.9351 -3.2174 14 6 8.8456 -5.6583 -2.7964 15 7 9.7470 -4.8941 -2.2215 16 14 9.3703 -7.2170 -3.6822 17 1 8.9662 -7.1352 -5.1089 18 1 10.8453 -7.3640 -3.5936 19 1 8.7164 -8.3902 -3.0490 20 6 3.2509 -1.4739 0.7689 21 7 2.0431 -0.7372 1.1690 22 6 1.4961 -0.7355 2.4008 23 8 0.4918 -0.0861 2.6190 24 6 2.1170 -1.5229 3.4859 25 6 1.6279 -1.5784 4.7896 26 7 2.3519 -2.3439 5.5527 27 16 3.5307 -2.9204 4.7107 28 7 3.2015 -2.2520 3.3405 29 1 -0.3634 0.5016 0.8970 30 1 -0.3634 0.5259 -0.8829 31 1 -0.3633 -1.0276 -0.0140 32 1 1.4549 -1.6487 -1.4404 33 1 2.1420 -0.1262 -2.0995 34 1 3.6252 -2.4261 -2.3804 35 1 5.8709 -1.7036 -1.7961 36 1 5.6874 -2.6240 -0.2837 37 1 7.7826 -3.5986 -1.6712 38 1 10.6848 -5.1396 -2.2568 39 1 4.1069 -1.1235 1.3456 40 1 3.1053 -2.5415 0.9332 41 1 0.7483 -1.0501 5.1265 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725576373.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:18 Heat of formation + Delta-G solvation = -18.875994 kcal Electronic energy + Delta-G solvation = -26656.375113 eV Core-core repulsion = 22697.859330 eV Total energy + Delta-G solvation = -3958.515783 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.27925 -40.84300 -40.08281 -38.73792 -36.24503 -35.60002 -34.83129 -33.24925 -32.70498 -31.16448 -28.59712 -27.91757 -26.75050 -25.83706 -24.62018 -22.44168 -21.85004 -21.08100 -20.42413 -20.26544 -19.85690 -18.10003 -17.97747 -17.74818 -17.06318 -16.84065 -16.54197 -16.23810 -16.06086 -15.87986 -15.39326 -15.21636 -14.86262 -14.68249 -14.47498 -13.90577 -13.64855 -13.47569 -13.34596 -13.22512 -13.05236 -12.93600 -12.79923 -12.48125 -12.41890 -12.30764 -12.27572 -12.12234 -12.01132 -11.79384 -11.75875 -11.48382 -10.90274 -10.32450 -10.27909 -9.99647 -9.71993 -9.38707 -8.44973 -5.93422 -0.63586 0.36766 0.45593 0.61150 1.40913 1.43118 1.53533 1.77391 1.96711 2.07790 2.30324 2.86168 3.19528 3.22788 3.43420 3.55569 3.59072 3.73706 4.06462 4.10060 4.18631 4.32494 4.34453 4.40576 4.46954 4.52810 4.61173 4.72554 4.78869 4.81741 4.97796 5.00772 5.17529 5.20746 5.38625 5.42622 5.52147 5.90118 6.10675 6.28989 6.39562 6.62080 6.88962 7.14607 7.58648 8.13958 8.72105 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012722 B = 0.002696 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.391206 B =10384.693764 C =12181.103510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.135 3.865 3 H 0.097 0.903 4 C -0.121 4.121 5 C 0.075 3.925 6 H 0.081 0.919 7 N -0.670 5.670 8 C 0.066 3.934 9 C 0.439 3.561 10 O -0.623 6.623 11 N -0.573 5.573 12 C -0.334 4.334 13 H 0.078 0.922 14 C -0.011 4.011 15 N -0.920 5.920 16 Si 0.990 3.010 17 H -0.272 1.272 18 H -0.271 1.271 19 H -0.273 1.273 20 C 0.124 3.876 21 N -0.594 5.594 22 C 0.617 3.383 23 O -0.544 6.544 24 C -0.006 4.006 25 C 0.091 3.909 26 N -0.596 5.596 27 S 0.770 5.230 28 N -0.557 5.557 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.043 0.957 32 H 0.078 0.922 33 H 0.112 0.888 34 H 0.353 0.647 35 H 0.073 0.927 36 H 0.101 0.899 37 H 0.397 0.603 38 H 0.277 0.723 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.273 12.556 11.414 20.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.033 3.967 3 H 0.115 0.885 4 C -0.160 4.160 5 C -0.035 4.035 6 H 0.099 0.901 7 N -0.304 5.304 8 C -0.067 4.067 9 C 0.226 3.774 10 O -0.510 6.510 11 N -0.210 5.210 12 C -0.464 4.464 13 H 0.096 0.904 14 C -0.211 4.211 15 N -0.561 5.561 16 Si 0.814 3.186 17 H -0.197 1.197 18 H -0.196 1.196 19 H -0.198 1.198 20 C 0.000 4.000 21 N -0.327 5.327 22 C 0.400 3.600 23 O -0.423 6.423 24 C -0.179 4.179 25 C -0.101 4.101 26 N -0.438 5.438 27 S 0.812 5.188 28 N -0.408 5.408 29 H 0.090 0.910 30 H 0.104 0.896 31 H 0.062 0.938 32 H 0.097 0.903 33 H 0.131 0.869 34 H 0.174 0.826 35 H 0.090 0.910 36 H 0.119 0.881 37 H 0.230 0.770 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -11.737 10.710 12.371 20.137 hybrid contribution -0.194 0.965 -1.160 1.522 sum -11.930 11.675 11.211 20.108 Atomic orbital electron populations 1.22112 0.93360 1.02210 1.03992 1.22139 0.95670 0.95991 0.82898 0.88529 1.23092 0.94316 1.00962 0.97585 1.22642 0.97277 0.90749 0.92861 0.90113 1.59942 1.10301 1.38058 1.22103 1.21588 0.89481 0.94257 1.01336 1.20865 0.82325 0.89435 0.84760 1.90498 1.52167 1.56311 1.51994 1.41918 1.06704 1.23017 1.49358 1.19618 0.92774 1.01726 1.32237 0.90359 1.25994 0.95032 1.02029 0.98044 1.69658 1.02417 1.39524 1.44461 0.85031 0.77333 0.77710 0.78537 1.19707 1.19554 1.19795 1.22059 0.86251 0.96901 0.94754 1.48345 1.28086 1.47446 1.08774 1.16477 0.82726 0.80331 0.80437 1.90752 1.25125 1.44535 1.81848 1.22423 0.94958 1.03209 0.97314 1.23915 1.01723 0.96920 0.87587 1.72225 1.13878 1.18287 1.39385 1.79106 1.20990 1.34190 0.84543 1.72605 1.19060 1.15482 1.33686 0.90969 0.89556 0.93754 0.90350 0.86940 0.82624 0.90968 0.88087 0.76953 0.91311 0.90821 0.91368 0.75511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 8.71 71.98 0.63 -2.23 16 2 C 0.14 2.39 3.77 45.47 0.17 2.56 16 3 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 4 C -0.12 -2.03 5.96 32.08 0.19 -1.84 16 5 C 0.08 1.55 3.25 46.19 0.15 1.70 16 6 H 0.08 1.40 7.90 -2.39 -0.02 1.38 16 7 N -0.67 -19.04 5.92 -489.01 -2.89 -21.93 16 8 C 0.07 2.07 6.02 85.56 0.52 2.59 16 9 C 0.44 20.02 7.82 87.66 0.69 20.70 16 10 O -0.62 -33.50 15.78 -3.07 -0.05 -33.55 16 11 N -0.57 -28.51 5.29 -306.98 -1.62 -30.14 16 12 C -0.33 -18.61 9.68 84.04 0.81 -17.80 16 13 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 14 C -0.01 -0.58 5.50 84.93 0.47 -0.12 16 15 N -0.92 -48.70 13.05 21.66 0.28 -48.42 16 16 Si 0.99 42.24 29.55 68.60 2.03 44.26 16 17 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 18 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 19 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 20 C 0.12 2.83 5.17 86.73 0.45 3.28 16 21 N -0.59 -13.13 3.24 -791.62 -2.57 -15.70 16 22 C 0.62 14.89 7.63 86.76 0.66 15.55 16 23 O -0.54 -14.49 14.45 -3.93 -0.06 -14.55 16 24 C -0.01 -0.12 6.71 41.98 0.28 0.16 16 25 C 0.09 1.72 11.22 85.22 0.96 2.68 16 26 N -0.60 -11.43 11.41 -92.46 -1.05 -12.49 16 27 S 0.77 13.04 23.69 -56.49 -1.34 11.70 16 28 N -0.56 -12.19 8.64 -80.58 -0.70 -12.89 16 29 H 0.07 1.56 5.88 -2.38 -0.01 1.54 16 30 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.08 1.55 8.06 -2.39 -0.02 1.53 16 33 H 0.11 1.32 8.14 -2.39 -0.02 1.31 16 34 H 0.35 10.34 8.21 -89.69 -0.74 9.60 16 35 H 0.07 1.93 8.09 -2.39 -0.02 1.91 16 36 H 0.10 2.93 8.13 -2.39 -0.02 2.92 16 37 H 0.40 18.68 7.90 -92.71 -0.73 17.95 16 38 H 0.28 13.80 8.31 -92.71 -0.77 13.03 16 39 H 0.07 1.64 7.69 -2.39 -0.02 1.62 16 40 H 0.07 1.91 7.45 -2.39 -0.02 1.90 16 41 H 0.23 3.30 8.06 -2.91 -0.02 3.27 16 Total: -1.00 -69.85 359.19 -2.37 -72.22 By element: Atomic # 1 Polarization: 34.62 SS G_CDS: -0.37 Total: 34.25 kcal Atomic # 6 Polarization: 21.25 SS G_CDS: 5.97 Total: 27.22 kcal Atomic # 7 Polarization: -133.01 SS G_CDS: -8.55 Total: -141.56 kcal Atomic # 8 Polarization: -47.99 SS G_CDS: -0.11 Total: -48.10 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.26 kcal Atomic # 16 Polarization: 13.04 SS G_CDS: -1.34 Total: 11.70 kcal Total: -69.85 -2.37 -72.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725576373.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.341 kcal (2) G-P(sol) polarization free energy of solvation -69.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds