Wall clock time and date at job start Tue Mar 31 2020 23:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.99834 * 2 1 4 4 C 1.54323 * 109.88368 * 121.09377 * 2 1 3 5 5 C 1.55153 * 103.10236 * 141.70038 * 4 2 1 6 6 H 1.09003 * 111.00505 * 82.48412 * 5 4 2 7 7 N 1.46898 * 111.00907 * 206.33611 * 5 4 2 8 8 C 1.46892 * 111.00450 * 205.00102 * 7 5 4 9 9 C 1.50705 * 109.47372 * 179.97438 * 8 7 5 10 10 O 1.21293 * 119.99481 * 0.02562 * 9 8 7 11 11 N 1.34770 * 119.99895 * 179.97438 * 9 8 7 12 12 C 1.37102 * 119.99651 * 180.02562 * 11 9 8 13 13 H 1.07998 * 119.99964 * 359.97438 * 12 11 9 14 14 C 1.38947 * 120.00000 * 180.02562 * 12 11 9 15 15 N 1.31412 * 120.00223 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 120.00228 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.46961 * 89.99603 * 16 14 12 18 18 H 1.48498 * 109.47106 * 209.99816 * 16 14 12 19 19 H 1.48499 * 109.46640 * 329.99666 * 16 14 12 20 20 C 1.54915 * 101.58175 * 324.40929 * 5 4 2 21 21 N 1.47428 * 104.83102 * 37.00975 * 20 5 4 22 22 C 1.34778 * 125.64860 * 155.91040 * 21 20 5 23 23 O 1.21558 * 120.00115 * 179.97438 * 22 21 20 24 24 C 1.47755 * 119.99860 * 359.97438 * 22 21 20 25 25 C 1.39351 * 124.11400 * 179.72344 * 24 22 21 26 26 N 1.30090 * 112.14128 * 179.84936 * 25 24 22 27 27 S 1.55925 * 108.75894 * 0.40032 * 26 25 24 28 28 N 1.31490 * 124.11716 * 0.02562 * 24 22 21 29 29 H 1.09004 * 109.47442 * 298.90270 * 1 2 3 30 30 H 1.08999 * 109.47429 * 58.90757 * 1 2 3 31 31 H 1.09004 * 109.47135 * 178.90269 * 1 2 3 32 32 H 1.09002 * 110.72057 * 23.24789 * 4 2 1 33 33 H 1.09003 * 110.71837 * 260.15363 * 4 2 1 34 34 H 1.00907 * 110.99705 * 328.95733 * 7 5 4 35 35 H 1.08999 * 109.47132 * 299.99484 * 8 7 5 36 36 H 1.09000 * 109.47378 * 59.99927 * 8 7 5 37 37 H 0.96992 * 120.00489 * 0.02562 * 11 9 8 38 38 H 0.97003 * 120.00732 * 180.02562 * 15 14 12 39 39 H 1.09000 * 110.36497 * 155.84404 * 20 5 4 40 40 H 1.08996 * 110.36659 * 278.05860 * 20 5 4 41 41 H 1.07997 * 123.92928 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7495 1.2427 5 6 3.2897 -1.5140 0.6969 6 1 4.1668 -0.8676 0.6652 7 7 3.5558 -2.7204 1.4916 8 6 4.9691 -3.1100 1.4003 9 6 5.2035 -4.3481 2.2268 10 8 4.2833 -4.8563 2.8321 11 7 6.4351 -4.8913 2.2927 12 6 6.6481 -6.0180 3.0442 13 1 5.8290 -6.4700 3.5838 14 6 7.9180 -6.5777 3.1126 15 7 8.9148 -6.0274 2.4564 16 14 8.2085 -8.1125 4.1372 17 1 7.9935 -9.3171 3.2960 18 1 9.6021 -8.1089 4.6498 19 1 7.2606 -8.1311 5.2801 20 6 2.8201 -1.8831 -0.7325 21 7 2.0352 -0.7197 -1.1841 22 6 1.8148 -0.3710 -2.4672 23 8 1.1488 0.6129 -2.7238 24 6 2.3829 -1.1847 -3.5618 25 6 2.2049 -0.9067 -4.9157 26 7 2.8087 -1.7715 -5.6773 27 16 3.5154 -2.8279 -4.7740 28 7 3.1132 -2.2625 -3.3772 29 1 -0.3634 0.4967 0.8997 30 1 -0.3634 0.5307 -0.8800 31 1 -0.3633 -1.0275 -0.0197 32 1 1.3051 -1.4459 1.6183 33 1 2.3499 -0.0459 2.0212 34 1 3.2783 -2.5887 2.4528 35 1 5.2234 -3.3137 0.3601 36 1 5.5944 -2.2996 1.7752 37 1 7.1708 -4.4851 1.8084 38 1 9.8013 -6.4184 2.5038 39 1 3.6788 -2.0380 -1.3857 40 1 2.1969 -2.7770 -0.7080 41 1 1.6346 -0.0691 -5.2892 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725576374.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:22 Heat of formation + Delta-G solvation = 4.952942 kcal Electronic energy + Delta-G solvation = -26590.566665 eV Core-core repulsion = 22633.084182 eV Total energy + Delta-G solvation = -3957.482482 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.47903 -39.93300 -38.41059 -37.68879 -34.90065 -34.08557 -33.80801 -31.86525 -31.27076 -30.07479 -27.77719 -26.35479 -25.99188 -24.27002 -23.67475 -21.53104 -20.96332 -19.70629 -19.56000 -19.18277 -17.91734 -17.31854 -16.96676 -16.34581 -16.15116 -15.66674 -15.25005 -15.04244 -14.76078 -14.46208 -14.20008 -13.87430 -13.69167 -13.50200 -13.26705 -12.86915 -12.58416 -12.47333 -12.25996 -12.13635 -11.77423 -11.66539 -11.53932 -11.52858 -11.47645 -11.18195 -11.06067 -10.91553 -10.72613 -10.41630 -10.25834 -10.24394 -9.54290 -9.53696 -8.87909 -8.51645 -8.17695 -7.99274 -6.44443 -3.85390 0.13370 1.10145 1.23797 1.31748 2.60210 2.83616 3.15953 3.24892 3.30472 3.85345 3.89087 4.11611 4.23066 4.32929 4.43136 4.54466 4.79604 4.81858 5.04516 5.05564 5.14193 5.19121 5.20230 5.28127 5.44276 5.55993 5.68157 5.71239 5.79221 5.85401 5.93150 5.99953 6.00985 6.08219 6.22232 6.24276 7.11590 7.18724 7.52638 7.54784 7.75819 8.03250 8.57947 9.15035 9.51106 10.02219 10.73200 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012886 B = 0.002639 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.325083 B =10605.773029 C =12420.125022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.140 3.860 3 H 0.081 0.919 4 C -0.133 4.133 5 C 0.071 3.929 6 H 0.062 0.938 7 N -0.655 5.655 8 C 0.050 3.950 9 C 0.441 3.559 10 O -0.583 6.583 11 N -0.563 5.563 12 C -0.300 4.300 13 H 0.103 0.897 14 C 0.023 3.977 15 N -0.902 5.902 16 Si 0.930 3.070 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.270 1.270 20 C 0.111 3.889 21 N -0.594 5.594 22 C 0.619 3.381 23 O -0.529 6.529 24 C 0.012 3.988 25 C 0.088 3.912 26 N -0.581 5.581 27 S 0.722 5.278 28 N -0.535 5.535 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.355 0.645 35 H 0.086 0.914 36 H 0.045 0.955 37 H 0.392 0.608 38 H 0.272 0.728 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.716 12.730 -12.263 20.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.099 0.901 4 C -0.172 4.172 5 C -0.040 4.040 6 H 0.080 0.920 7 N -0.288 5.288 8 C -0.083 4.083 9 C 0.226 3.774 10 O -0.467 6.467 11 N -0.199 5.199 12 C -0.429 4.429 13 H 0.121 0.879 14 C -0.179 4.179 15 N -0.543 5.543 16 Si 0.757 3.243 17 H -0.204 1.204 18 H -0.209 1.209 19 H -0.194 1.194 20 C -0.013 4.013 21 N -0.327 5.327 22 C 0.402 3.598 23 O -0.405 6.405 24 C -0.163 4.163 25 C -0.105 4.105 26 N -0.421 5.421 27 S 0.764 5.236 28 N -0.385 5.385 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.110 0.890 33 H 0.102 0.898 34 H 0.176 0.824 35 H 0.105 0.895 36 H 0.063 0.937 37 H 0.225 0.775 38 H 0.081 0.919 39 H 0.114 0.886 40 H 0.102 0.898 41 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -10.540 10.752 -13.105 19.961 hybrid contribution 0.257 1.507 1.092 1.879 sum -10.283 12.259 -12.012 20.008 Atomic orbital electron populations 1.22140 0.94188 1.02732 1.03011 1.21681 0.94983 0.96125 0.83475 0.90125 1.22985 0.98194 0.99593 0.96384 1.22688 0.96723 0.90783 0.93809 0.92048 1.59932 1.19334 1.32520 1.17064 1.21756 0.88619 0.96768 1.01122 1.19764 0.83943 0.87250 0.86433 1.90528 1.42530 1.64484 1.49183 1.41858 1.08282 1.25770 1.44037 1.19701 0.95594 1.02834 1.24782 0.87906 1.25259 0.95114 0.99550 0.97966 1.69609 1.01291 1.41021 1.42363 0.85862 0.77521 0.81103 0.79839 1.20364 1.20941 1.19415 1.22627 0.96336 0.87668 0.94624 1.48412 1.51153 1.28861 1.04229 1.16315 0.80130 0.83151 0.80201 1.90810 1.40211 1.26657 1.82809 1.22445 1.02512 0.95322 0.96013 1.23732 0.99147 0.99856 0.87795 1.72250 1.18066 1.11856 1.39955 1.79339 1.37165 1.25412 0.81678 1.72787 1.17684 1.14692 1.33373 0.91347 0.91166 0.92148 0.88972 0.89786 0.82367 0.89534 0.93694 0.77467 0.91852 0.88647 0.89793 0.77075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 9.11 37.16 0.34 -1.17 16 2 C 0.14 1.38 3.48 -66.70 -0.23 1.14 16 3 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 4 C -0.13 -1.24 5.87 -24.90 -0.15 -1.39 16 5 C 0.07 0.82 3.38 -65.56 -0.22 0.60 16 6 H 0.06 0.68 7.83 -51.93 -0.41 0.27 16 7 N -0.65 -9.64 6.04 -105.73 -0.64 -10.28 16 8 C 0.05 0.83 6.03 -4.98 -0.03 0.80 16 9 C 0.44 10.01 7.82 -10.99 -0.09 9.93 16 10 O -0.58 -15.33 15.78 5.55 0.09 -15.24 16 11 N -0.56 -13.88 5.29 -10.96 -0.06 -13.94 16 12 C -0.30 -8.20 9.68 -14.93 -0.14 -8.34 16 13 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 14 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 15 N -0.90 -24.10 13.05 55.50 0.72 -23.38 16 16 Si 0.93 20.72 29.55 -169.99 -5.02 15.70 16 17 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 18 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 19 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 20 C 0.11 1.32 5.78 -2.52 -0.01 1.30 16 21 N -0.59 -6.76 3.08 -163.80 -0.50 -7.26 16 22 C 0.62 7.53 7.65 -12.37 -0.09 7.43 16 23 O -0.53 -7.23 15.87 5.31 0.08 -7.14 16 24 C 0.01 0.13 6.71 -83.71 -0.56 -0.43 16 25 C 0.09 0.84 11.22 -17.88 -0.20 0.64 16 26 N -0.58 -5.66 11.41 19.43 0.22 -5.44 16 27 S 0.72 6.14 23.69 -107.50 -2.55 3.60 16 28 N -0.54 -5.77 8.29 23.18 0.19 -5.58 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.75 6.93 -51.93 -0.36 0.39 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.09 0.89 7.85 -51.93 -0.41 0.48 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.36 5.33 8.14 -39.29 -0.32 5.01 16 35 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.05 0.67 8.09 -51.93 -0.42 0.25 16 37 H 0.39 9.24 7.90 -40.82 -0.32 8.92 16 38 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 39 H 0.10 1.17 6.09 -51.93 -0.32 0.86 16 40 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.21 1.58 8.06 -52.49 -0.42 1.15 16 LS Contribution 360.79 15.07 5.44 5.44 Total: -1.00 -32.22 360.79 -8.54 -40.75 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -5.02 Total: 11.77 kcal Atomic # 6 Polarization: 12.51 SS G_CDS: -1.49 Total: 11.02 kcal Atomic # 7 Polarization: -65.83 SS G_CDS: -0.06 Total: -65.89 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: 0.17 Total: -22.38 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: 6.14 SS G_CDS: -2.55 Total: 3.60 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.22 -8.54 -40.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725576374.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.707 kcal (2) G-P(sol) polarization free energy of solvation -32.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds