Wall clock time and date at job start Tue Mar 31 2020 23:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.99834 * 2 1 4 4 C 1.54323 * 109.88368 * 121.09377 * 2 1 3 5 5 C 1.55153 * 103.10236 * 141.70038 * 4 2 1 6 6 H 1.09003 * 111.00505 * 82.48412 * 5 4 2 7 7 N 1.46898 * 111.00907 * 206.33611 * 5 4 2 8 8 C 1.46892 * 111.00450 * 205.00102 * 7 5 4 9 9 C 1.50705 * 109.47372 * 179.97438 * 8 7 5 10 10 O 1.21293 * 119.99481 * 0.02562 * 9 8 7 11 11 N 1.34770 * 119.99895 * 179.97438 * 9 8 7 12 12 C 1.37102 * 119.99651 * 180.02562 * 11 9 8 13 13 H 1.07998 * 119.99964 * 359.97438 * 12 11 9 14 14 C 1.38947 * 120.00000 * 180.02562 * 12 11 9 15 15 N 1.31412 * 120.00223 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 120.00228 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.46961 * 89.99603 * 16 14 12 18 18 H 1.48498 * 109.47106 * 209.99816 * 16 14 12 19 19 H 1.48499 * 109.46640 * 329.99666 * 16 14 12 20 20 C 1.54915 * 101.58175 * 324.40929 * 5 4 2 21 21 N 1.47428 * 104.83102 * 37.00975 * 20 5 4 22 22 C 1.34778 * 125.64860 * 155.91040 * 21 20 5 23 23 O 1.21558 * 120.00115 * 179.97438 * 22 21 20 24 24 C 1.47755 * 119.99860 * 359.97438 * 22 21 20 25 25 C 1.39351 * 124.11400 * 179.72344 * 24 22 21 26 26 N 1.30090 * 112.14128 * 179.84936 * 25 24 22 27 27 S 1.55925 * 108.75894 * 0.40032 * 26 25 24 28 28 N 1.31490 * 124.11716 * 0.02562 * 24 22 21 29 29 H 1.09004 * 109.47442 * 298.90270 * 1 2 3 30 30 H 1.08999 * 109.47429 * 58.90757 * 1 2 3 31 31 H 1.09004 * 109.47135 * 178.90269 * 1 2 3 32 32 H 1.09002 * 110.72057 * 23.24789 * 4 2 1 33 33 H 1.09003 * 110.71837 * 260.15363 * 4 2 1 34 34 H 1.00907 * 110.99705 * 328.95733 * 7 5 4 35 35 H 1.08999 * 109.47132 * 299.99484 * 8 7 5 36 36 H 1.09000 * 109.47378 * 59.99927 * 8 7 5 37 37 H 0.96992 * 120.00489 * 0.02562 * 11 9 8 38 38 H 0.97003 * 120.00732 * 180.02562 * 15 14 12 39 39 H 1.09000 * 110.36497 * 155.84404 * 20 5 4 40 40 H 1.08996 * 110.36659 * 278.05860 * 20 5 4 41 41 H 1.07997 * 123.92928 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7495 1.2427 5 6 3.2897 -1.5140 0.6969 6 1 4.1668 -0.8676 0.6652 7 7 3.5558 -2.7204 1.4916 8 6 4.9691 -3.1100 1.4003 9 6 5.2035 -4.3481 2.2268 10 8 4.2833 -4.8563 2.8321 11 7 6.4351 -4.8913 2.2927 12 6 6.6481 -6.0180 3.0442 13 1 5.8290 -6.4700 3.5838 14 6 7.9180 -6.5777 3.1126 15 7 8.9148 -6.0274 2.4564 16 14 8.2085 -8.1125 4.1372 17 1 7.9935 -9.3171 3.2960 18 1 9.6021 -8.1089 4.6498 19 1 7.2606 -8.1311 5.2801 20 6 2.8201 -1.8831 -0.7325 21 7 2.0352 -0.7197 -1.1841 22 6 1.8148 -0.3710 -2.4672 23 8 1.1488 0.6129 -2.7238 24 6 2.3829 -1.1847 -3.5618 25 6 2.2049 -0.9067 -4.9157 26 7 2.8087 -1.7715 -5.6773 27 16 3.5154 -2.8279 -4.7740 28 7 3.1132 -2.2625 -3.3772 29 1 -0.3634 0.4967 0.8997 30 1 -0.3634 0.5307 -0.8800 31 1 -0.3633 -1.0275 -0.0197 32 1 1.3051 -1.4459 1.6183 33 1 2.3499 -0.0459 2.0212 34 1 3.2783 -2.5887 2.4528 35 1 5.2234 -3.3137 0.3601 36 1 5.5944 -2.2996 1.7752 37 1 7.1708 -4.4851 1.8084 38 1 9.8013 -6.4184 2.5038 39 1 3.6788 -2.0380 -1.3857 40 1 2.1969 -2.7770 -0.7080 41 1 1.6346 -0.0691 -5.2892 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725576374.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:21 Heat of formation + Delta-G solvation = -19.935278 kcal Electronic energy + Delta-G solvation = -26591.645899 eV Core-core repulsion = 22633.084182 eV Total energy + Delta-G solvation = -3958.561717 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.28377 -40.81355 -40.07588 -38.77480 -36.25942 -35.60729 -34.84883 -33.24747 -32.68997 -31.15973 -28.60926 -27.89642 -26.83229 -25.82213 -24.63954 -22.38477 -21.87941 -21.08698 -20.44157 -20.30290 -19.86189 -18.20673 -17.85762 -17.76430 -17.08726 -16.80410 -16.55414 -16.28754 -16.02230 -15.85455 -15.40266 -15.23612 -14.80551 -14.56905 -14.49247 -13.95044 -13.74591 -13.49625 -13.38657 -13.26493 -13.16264 -12.90157 -12.77165 -12.56331 -12.39899 -12.31823 -12.26628 -12.11602 -11.98358 -11.76910 -11.59761 -11.48619 -11.13981 -10.32223 -10.28843 -9.99340 -9.76862 -9.38054 -8.44856 -5.93252 -0.65252 0.35674 0.44894 0.60653 1.39412 1.43541 1.55698 1.75010 1.95403 2.07764 2.30506 2.84086 3.22145 3.23336 3.42758 3.55551 3.61166 3.72331 4.03830 4.05631 4.17574 4.32902 4.33548 4.39978 4.46672 4.51555 4.59881 4.70347 4.80042 4.83778 4.94745 5.01852 5.12334 5.21996 5.32663 5.43010 5.43206 5.90009 6.10355 6.27535 6.39485 6.62082 6.85808 7.14861 7.58796 8.13866 8.72448 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012886 B = 0.002639 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.325083 B =10605.773029 C =12420.125022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.136 3.864 3 H 0.088 0.912 4 C -0.123 4.123 5 C 0.075 3.925 6 H 0.074 0.926 7 N -0.666 5.666 8 C 0.066 3.934 9 C 0.440 3.560 10 O -0.622 6.622 11 N -0.573 5.573 12 C -0.332 4.332 13 H 0.079 0.921 14 C -0.012 4.012 15 N -0.920 5.920 16 Si 0.990 3.010 17 H -0.272 1.272 18 H -0.272 1.272 19 H -0.273 1.273 20 C 0.118 3.882 21 N -0.594 5.594 22 C 0.616 3.384 23 O -0.549 6.549 24 C -0.004 4.004 25 C 0.091 3.909 26 N -0.596 5.596 27 S 0.773 5.227 28 N -0.557 5.557 29 H 0.089 0.911 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.354 0.646 35 H 0.101 0.899 36 H 0.070 0.930 37 H 0.396 0.604 38 H 0.277 0.723 39 H 0.092 0.908 40 H 0.066 0.934 41 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.325 13.310 -12.467 20.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.034 3.966 3 H 0.106 0.894 4 C -0.161 4.161 5 C -0.036 4.036 6 H 0.092 0.908 7 N -0.300 5.300 8 C -0.067 4.067 9 C 0.227 3.773 10 O -0.508 6.508 11 N -0.211 5.211 12 C -0.462 4.462 13 H 0.097 0.903 14 C -0.212 4.212 15 N -0.561 5.561 16 Si 0.814 3.186 17 H -0.197 1.197 18 H -0.197 1.197 19 H -0.197 1.197 20 C -0.006 4.006 21 N -0.326 5.326 22 C 0.400 3.600 23 O -0.427 6.427 24 C -0.177 4.177 25 C -0.101 4.101 26 N -0.437 5.437 27 S 0.815 5.185 28 N -0.409 5.409 29 H 0.107 0.893 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.107 0.893 33 H 0.125 0.875 34 H 0.175 0.825 35 H 0.119 0.881 36 H 0.088 0.912 37 H 0.230 0.770 38 H 0.087 0.913 39 H 0.110 0.890 40 H 0.085 0.915 41 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -10.149 11.361 -13.322 20.238 hybrid contribution 0.112 1.303 1.093 1.704 sum -10.038 12.664 -12.229 20.265 Atomic orbital electron populations 1.22081 0.93818 1.02210 1.03314 1.21838 0.95308 0.96417 0.83031 0.89366 1.22952 0.96945 0.99592 0.96583 1.22695 0.98103 0.89806 0.93024 0.90777 1.59867 1.18080 1.34672 1.17369 1.21598 0.90340 0.94238 1.00501 1.20833 0.82634 0.88212 0.85614 1.90499 1.43551 1.66038 1.50738 1.41926 1.09225 1.25611 1.44299 1.19654 0.95619 1.04578 1.26334 0.90305 1.25999 0.94476 1.02016 0.98677 1.69666 1.01616 1.42004 1.42830 0.84963 0.77676 0.77701 0.78234 1.19730 1.19651 1.19744 1.22469 0.95899 0.87265 0.94962 1.48473 1.50939 1.28695 1.04540 1.16495 0.79860 0.83037 0.80611 1.90791 1.41168 1.27574 1.83157 1.22357 1.03446 0.95704 0.96219 1.23899 0.98882 1.00091 0.87251 1.72220 1.18645 1.12413 1.40459 1.79121 1.35333 1.23896 0.80123 1.72638 1.18129 1.14992 1.35132 0.89265 0.92675 0.92959 0.89331 0.87482 0.82542 0.88067 0.91188 0.76983 0.91342 0.88970 0.91548 0.75588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.71 9.11 71.98 0.66 -2.05 16 2 C 0.14 2.46 3.48 45.25 0.16 2.61 16 3 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 4 C -0.12 -2.02 5.87 31.78 0.19 -1.83 16 5 C 0.07 1.56 3.38 46.31 0.16 1.72 16 6 H 0.07 1.42 7.83 -2.39 -0.02 1.40 16 7 N -0.67 -18.71 6.04 -488.41 -2.95 -21.66 16 8 C 0.07 2.07 6.03 85.56 0.52 2.59 16 9 C 0.44 19.96 7.82 87.66 0.69 20.65 16 10 O -0.62 -33.16 15.78 -3.07 -0.05 -33.21 16 11 N -0.57 -28.48 5.29 -306.99 -1.62 -30.10 16 12 C -0.33 -18.46 9.68 84.04 0.81 -17.65 16 13 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 14 C -0.01 -0.62 5.50 84.93 0.47 -0.16 16 15 N -0.92 -48.70 13.05 21.66 0.28 -48.42 16 16 Si 0.99 42.17 29.55 68.60 2.03 44.20 16 17 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 18 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 19 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 20 C 0.12 2.68 5.78 86.86 0.50 3.19 16 21 N -0.59 -12.99 3.08 -790.42 -2.44 -15.42 16 22 C 0.62 14.67 7.65 86.76 0.66 15.33 16 23 O -0.55 -14.80 15.87 -3.90 -0.06 -14.87 16 24 C 0.00 -0.09 6.71 41.98 0.28 0.20 16 25 C 0.09 1.66 11.22 85.22 0.96 2.61 16 26 N -0.60 -10.90 11.41 -92.43 -1.05 -11.95 16 27 S 0.77 12.21 23.69 -56.49 -1.34 10.87 16 28 N -0.56 -11.56 8.29 -80.57 -0.67 -12.23 16 29 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 30 H 0.05 1.14 6.93 -2.39 -0.02 1.12 16 31 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.09 1.56 7.85 -2.39 -0.02 1.54 16 33 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.35 10.19 8.14 -89.69 -0.73 9.46 16 35 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 36 H 0.07 1.90 8.09 -2.39 -0.02 1.88 16 37 H 0.40 18.67 7.90 -92.71 -0.73 17.94 16 38 H 0.28 13.75 8.31 -92.71 -0.77 12.98 16 39 H 0.09 2.17 6.09 -2.39 -0.01 2.15 16 40 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.23 3.18 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -69.37 360.79 -2.19 -71.55 By element: Atomic # 1 Polarization: 34.39 SS G_CDS: -0.36 Total: 34.03 kcal Atomic # 6 Polarization: 21.16 SS G_CDS: 6.04 Total: 27.20 kcal Atomic # 7 Polarization: -131.34 SS G_CDS: -8.45 Total: -139.78 kcal Atomic # 8 Polarization: -47.96 SS G_CDS: -0.11 Total: -48.07 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Atomic # 16 Polarization: 12.21 SS G_CDS: -1.34 Total: 10.87 kcal Total: -69.37 -2.19 -71.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725576374.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.617 kcal (2) G-P(sol) polarization free energy of solvation -69.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds